UNITED STATES

SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549

FORM 10-Q


	QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the quarterly period ended ~~September~~June 30, ~~2021~~2022


	TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the transition period from to___________ to___________

Commission File Number 000-14656

REPLIGEN CORPORATION

(Exact Name of Registrant as Specified in its Charter)



Delaware	04-2729386
(State or Other Jurisdiction of Incorporation or Organization)	(I.R.S. Employer Identification No.)

41 Seyon Street, Bldg. 1, Suite 100 Waltham, MA	02453
(Address of Principal Executive Offices)	(Zip Code)

(781) 250-0111

Registrant’s Telephone Number, Including Area Code

Securities registered pursuant to Section 12(b) of the Act:


Title of each class	Trading Symbol(s)	Name of each exchange on which registered

Common Stock, par value $0.01 per share	RGEN	The Nasdaq Global Select Market

Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15 (d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days. Yes  No 

Indicate by check mark whether the registrant has submitted electronically every Interactive Data File required to be submitted pursuant to Rule 405 of Regulation S-T (§232.405 of this chapter) during the preceding 12 months (or for such shorter period that the registrant was required to submit such files). Yes  No 

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, a smaller reporting company, or an emerging growth company. See the definitions of “large accelerated filer,” “accelerated filer,” “smaller reporting company” and “emerging growth company” in Rule 12b-2 of the Exchange Act.:



Large accelerated filer		Accelerated filer	

Non-accelerated filer		Smaller reporting company	

Emerging growth company	

If an emerging growth company, indicate by check mark if the registrant has elected not to use the extended transition period for complying with any new or revised financial accounting standards provided pursuant to Section 13(a) of the Exchange Act. 

Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act.): Yes  No 

The number of shares outstanding of the registrant’s common stock on ~~October 25, 2021~~July 29, 2022 was ~~55,288,528~~55,491,199.

Table of Contents



		PAGE

PART I -	FINANCIAL INFORMATION

Item 1.	Financial Statements (interim periods unaudited)

	Consolidated Balance Sheets as of ~~September~~June 30, ~~2021~~2022 and December 31, ~~2020~~2021	4	3

	Consolidated Statements of Comprehensive Income for the Three and ~~Nine~~Six Months Ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021	5	4

	Consolidated Statements of Stockholders’ Equity for the Three and ~~Nine~~Six Months Ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021	6	5

	Consolidated Statements of Cash Flows for the ~~Nine~~Six Months Ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021	7	6

	Notes to Unaudited Consolidated Financial Statements	8	7

Item 2.	Management’s Discussion and Analysis of Financial Condition and Results of Operations	28	27

Item 3.	Quantitative and Qualitative Disclosures About Market Risk	38	37

Item 4.	Controls and Procedures		38

PART II -	OTHER INFORMATION

Item 1.	Legal Proceedings	40	39

Item 1A.	Risk Factors	40	39

Item 2.	Unregistered Sales of Equity Securities and Use of Proceeds	40	39

Item 3.	Defaults Upon Senior Securities	40	39

Item 4.	Mine Safety Disclosures	40	39

Item 5.	Other Information	40	39

Item 6.	Exhibits	41	40

Signatures		42
				41

PART I – FINANCIAL INFORMATION

ITEM 1. Financial Statements

REPLIGEN CORPORATION

CONSOLIDATED ~~BALANCE~~BALANCE SHEETS

(Unaudited, amounts in thousands, except share data)


	September 30,			December 31,		June 30,			December 31,
	2021			2020		2022			2021
ASSETS
Current assets:
Cash and cash equivalents	$	621,098		$	717,292	$	596,512		$	603,814
Accounts receivable, net of reserves of $1,214 and $762 at September 30, 2021 and December 31, 2020, respectively		122,048			71,389
Accounts receivable, net of reserves of $1,279 and $1,417 at June 30, 2022 and December 31, 2021, respectively							121,050			117,420
Inventories, net		156,163			95,025		239,117			184,494
Prepaid expenses and other current assets		11,545			18,676		19,316			25,949
Total current assets		910,854			902,382		975,995			931,677
Noncurrent assets:
Property, plant and equipment, net		99,652			66,870		168,370			124,964
Intangible assets, net		340,163			287,100		322,208			337,274
Goodwill		833,559			618,305		854,328			860,362
Deferred tax assets		1,542			2,481		1,907			1,903
Operating lease right of use assets		55,007			25,176		121,339			101,559
Other noncurrent assets		620			573		769			615
Total noncurrent assets		1,330,543			1,000,505		1,468,921			1,426,677
Total assets	$	2,241,397		$	1,902,887	$	2,444,916		$	2,358,354
LIABILITIES AND STOCKHOLDERS' EQUITY
Current liabilities:
Accounts payable	$	28,194		$	16,880	$	40,379		$	36,203
Operating lease liability		5,528			5,254		11,692			8,303
Current contingent consideration							17,046			0
Accrued liabilities		63,394			53,085		70,693			75,498
Convertible senior notes, current portion, net		252,323			243,737
Convertible Senior Notes, net							283,712			255,258
Total current liabilities		349,439			318,956		423,522			375,262
Noncurrent liabilities:
Deferred tax liabilities		39,125			27,032		23,651			33,480
Noncurrent operating lease liability		55,909			26,425		121,271			102,492
Noncurrent contingent consideration		79,962			0		67,897			94,238
Other noncurrent liabilities		1,697			1,324		3,211			2,815
Total noncurrent liabilities		176,693			54,781		216,030			233,025
Total liabilities		526,132			373,737		639,552			608,287
Commitments and contingencies (Note 9)
Stockholders' equity:
Preferred stock, $0.01 par value, 5,000,000 shares authorized, 0 shares issued or outstanding		—			—		0			0
Common stock, $0.01 par value; 80,000,000 shares authorized; 55,283,988 shares at September 30, 2021 and 54,760,837 shares at December 31, 2020 issued and outstanding		553			548
Common stock, $0.01 par value; 80,000,000 shares authorized; 55,465,918 shares at June 30, 2022 and 55,321,457 shares at December 31, 2021 issued and outstanding							555			553
Additional paid-in capital		1,559,681			1,460,748		1,533,762			1,572,340
Accumulated other comprehensive (loss) income		(9,919	)		2,085
Retained earnings		164,950			65,769
Accumulated other comprehensive loss							(37,091	)		(16,886	)
Accumulated earnings							308,138			194,060
Total stockholders’ equity		1,715,265			1,529,150		1,805,364			1,750,067
Total liabilities and stockholders’ equity	$	2,241,397		$	1,902,887	$	2,444,916		$	2,358,354

The accompanying notes are an integral part of these consolidated financial statements.

REPLIGEN CORPORATION

CONSOLIDATED STATEMENTS OFOF COMPREHENSIVE INCOME

(Unaudited, amounts in thousands, except per share data)

Three Months Ended
September 30,

Nine Months Ended
September 30,

2021

2020

2021

2020

Revenue:

Products

$
178,177

$
94,029

$
483,834

$
257,521

Royalty and other revenue

39

31

179

91

Total revenue

178,216

94,060

484,013

257,612

Costs and operating expenses:

Cost of product revenue

75,495

39,626

197,232

108,471

Research and development

9,154

4,422

25,155

13,460

Selling, general and administrative

48,373

29,051

131,809

83,277

Total costs and operating expenses

133,022

73,099

354,196

205,208

Income from operations

45,194

20,961

129,817

52,404

Other income (expenses):

Investment income

44

82

137

1,699

Interest expense

(3,220
)

(3,052
)

(9,470
)

(9,032
)
Other expenses

(786
)

(248
)

(1,789
)

(632
)
Other expenses, net

(3,962
)

(3,218
)

(11,122
)

(7,965
)
Income before income taxes

41,232

17,743

118,695

44,439

Income tax provision

7,734

3,191

19,514

4,211

Net income

$
33,498

$
14,552

$
99,181

$
40,228

Earnings per share:

Basic

$
0.61

$
0.28

$
1.81

$
0.77

Diluted

$
0.58

$
0.27

$
1.74

$
0.75

Weighted average common shares outstanding:

Basic

55,015

52,545

54,918

52,341

Diluted

57,368

53,469

57,072

53,300

Net income

$
33,498

$
14,552

$
99,181

$
40,228

Other comprehensive income (loss):

Foreign currency translation adjustment

(5,550
)

4,390

(12,004
)

5,304

Comprehensive income

$
27,948

$
18,942

$
87,177

$
45,532


	Three Months Ended June 30,						Six Months Ended June 30,
	2022			2021			2022			2021
Revenue:
Products	$	207,597		$	162,920		$	413,960		$	305,657
Royalty and other revenue		36			40			73			140
Total revenue		207,633			162,960			414,033			305,797
Costs and operating expenses:
Cost of product revenue		86,260			61,990			168,616			121,737
Research and development		10,440			8,389			22,595			16,001
Selling, general and administrative		54,649			44,341			108,949			83,436
Contingent consideration		(6,884	)		0			(9,295	)		0
Total costs and operating expenses		144,465			114,720			290,865			221,174
Income from operations		63,168			48,240			123,168			84,623
Other income (expenses):
Investment income		708			41			785			93
Interest expense		(271	)		(2,787	)		(563	)		(5,541	)
Amortization of debt issuance costs		(453	)		(357	)		(905	)		(709	)
Other expenses		(3,396	)		(779	)		(3,798	)		(1,003	)
Other expenses, net		(3,412	)		(3,882	)		(4,481	)		(7,160	)
Income before income taxes		59,756			44,358			118,687			77,463
Income tax provision		9,895			8,125			21,862			11,780
Net income	$	49,861		$	36,233		$	96,825		$	65,683
Earnings per share:
Basic	$	0.90		$	0.66		$	1.75		$	1.20
Diluted (Note 12)	$	0.88		$	0.64		$	1.68		$	1.16
Weighted average common shares outstanding:
Basic		55,444			54,931			55,399			54,868
Diluted (Note 12)		56,721			56,786			57,842			56,824

Net income	$	49,861		$	36,233		$	96,825		$	65,683
Other comprehensive income (loss):
Foreign currency translation adjustment		(15,517	)		3,125			(20,205	)		(6,454	)
Comprehensive income	$	34,344		$	39,358		$	76,620		$	59,229

The accompanying notes are an integral part of these consolidated financial statements.

REPLIGEN CORPORATION

CONSOLIDATED STATEMENTS OF STOCKHOLDERS’ EQUITY

(Unaudited, amounts in thousands, except share data)


	Nine Months Ended September 30, 2021																	Six Months Ended June 30, 2022
	Common Stock																	Common Stock
	Number of Shares			Par Value			Additional Paid-In Capital			Accumulated Other Comprehensive Income (Loss)			Retained Earnings		Total Stockholders' Equity			Number of Shares			Par Value			Additional Paid-In Capital			Accumulated Other Comprehensive Loss			Retained Earnings		Total Stockholders' Equity
Balance at December 31, 2020		54,760,837		$	548		$	1,460,748		$	2,085		$	65,769	$	1,529,150
Balance at December 31, 2021																			55,321,457		$	553		$	1,572,340		$	(16,886	)	$	194,060	$	1,750,067
Impact of the adoption of ASU 2020-06																			—			—			(39,070	)		—			17,253		(21,817	)
Net income		—			—			—			—			99,181		99,181			—			—			—			—			96,825		96,825
Issuance of common stock for debt conversion		7			0			2			—			—		2			12			0			(5	)		—			—		(5	)
Exercise of stock options and vesting of stock units		257,387			2			1,989			—			—		1,991			222,727			3			460			—			—		463
Issuance of common stock pursuant to the acquisition of Avitide Inc.		271,096			3			77,573			—			—		77,576
Tax withholding on vesting of restricted stock units		(5,339	)		(0	)		(1,252	)		—			—		(1,252	)		(78,278	)		(1	)		(14,758	)		—			—		(14,759	)
Stock-based compensation expense		—			—			20,476			—			—		20,476			—			—			14,900			—			—		14,900
True up of costs related to the December 2020 issuance of common stock		—			—			145			—			—		145
Translation adjustment		—			—			—			(12,004	)		—		(12,004	)		—			—			—			(20,205	)		—		(20,205	)
Balance at September 30, 2021		55,283,988		$	553		$	1,559,681		$	(9,919	)	$	164,950	$	1,715,265

Other																			—			—			(105	)		—			—		(105	)
Balance at June 30, 2022																			55,465,918		$	555		$	1,533,762		$	(37,091	)	$	308,138	$	1,805,364


	Three Months Ended September 30, 2021																	Three Months Ended June 30, 2022
	Common Stock																	Common Stock
	Number of Shares			Par Value			Additional Paid-In Capital			Accumulated Other Comprehensive Loss			Retained Earnings		Total Stockholders' Equity			Number of Shares			Par Value			Additional Paid-In Capital			Accumulated Other Comprehensive Loss			Retained Earnings		Total Stockholders' Equity
Balance at June 30, 2021		54,969,481		$	550		$	1,475,436		$	(4,369	)	$	131,452	$	1,603,069
Balance at March 31, 2022																			55,429,046		$	554		$	1,529,144		$	(21,574	)	$	258,277	$	1,766,401
Net income		—			—			—			—			33,498		33,498			—			—			—			—			49,861		49,861
Issuance of common stock for debt conversion		4			0			1			—			—		1			4			(0	)		(3	)							(3	)
Exercise of stock options and vesting of stock units		48,746			0			1,131			—			—		1,131			51,737			1			166			—			—		166
Issuance of common stock pursuant to the acquisition of Avitide Inc.		271,096			3			77,573			—			—		77,576
Tax withholding on vesting of restricted stock units		(5,339	)		(0	)		(1,252	)		—			—		(1,252	)		(14,869	)		(0	)		(2,448	)							(2,448	)
Stock-based compensation expense		—			—			6,792			—			—		6,792			—			—			6,985			—			—		6,985
Translation adjustment		—			—			—			(5,550	)		—		(5,550	)		—			—			—			(15,517	)		—		(15,517	)
Balance at September 30, 2021		55,283,988		$	553		$	1,559,681		$	(9,919	)	$	164,950	$	1,715,265

Other																			—			—			(82	)		—			—		(82	)
Balance at June 30, 2022																			55,465,918		$	555		$	1,533,762		$	(37,091	)	$	308,138	$	1,805,364


	Nine Months Ended September 30, 2020													Six Months Ended June 30, 2021
	Common Stock													Common Stock
	Number of Shares		Par Value		Additional Paid-In Capital		Accumulated Other Comprehensive Loss			Retained Earnings		Total Stockholders' Equity		Number of Shares		Par Value		Additional Paid-In Capital		Accumulated Other Comprehensive Income (Loss)			Retained Earnings		Total Stockholders' Equity
Balance at December 31, 2019		52,078,258	$	521	$	1,068,431	$	(15,027	)	$	5,843	$	1,059,768
Balance at December 31, 2020															54,760,837	$	548	$	1,460,748	$	2,085		$	65,769	$	1,529,150
Net income		—		—		—		—			40,228		40,228		—		—		—		—			65,683		65,683
Issuance of common stock for debt conversion															3		0		1		—			—		1
Exercise of stock options and vesting of stock units		528,442		5		7,073		—			—		7,078		208,641		2		858		—			—		860
Stock-based compensation expense		—		—		12,492		—			—		12,492		—		—		13,684		—			—		13,684
True-up of costs related to the December 2020 issuance of common stock															—		—		145		—			—		145
Translation adjustment		—		—		—		5,304			—		5,304		—		—		—		(6,454	)		—		(6,454	)
Balance as of September 30, 2020		52,606,700	$	526	$	1,087,996	$	(9,723	)	$	46,071	$	1,124,870

Balance at June 30, 2021															54,969,481	$	550	$	1,475,436	$	(4,369	)	$	131,452	$	1,603,069


	Three Months Ended September 30, 2020													Three Months Ended June 30, 2021
	Common Stock													Common Stock
	Number of Shares		Par Value		Additional Paid-In Capital		Accumulated Other Comprehensive Loss			Retained Earnings		Total Stockholders' Equity		Number of Shares		Par Value		Additional Paid-In Capital		Accumulated Other Comprehensive Loss			Retained Earnings		Total Stockholders' Equity
Balance at June 30, 2020		52,494,884	$	525	$	1,082,096	$	(14,113	)	$	31,519	$	1,100,027
Balance at March 31, 2021															54,899,245	$	549	$	1,467,942	$	(7,494	)	$	95,219	$	1,556,216
Net income		—		—		—		—			14,552		14,552		—		—		—		—			36,233		36,233
Exercise of stock options and vesting of stock units		111,816		1		1,675		—			—		1,676		70,236		1		351		—			—		352
Stock-based compensation expense		—		—		4,225		—			—		4,225		—		—		7,143		—			—		7,143
Translation adjustment		—		—		—		4,390			—		4,390		—		—		—		3,125			—		3,125
Balance as of September 30, 2020		52,606,700	$	526	$	1,087,996	$	(9,723	)	$	46,071	$	1,124,870

Balance at June 30, 2021															54,969,481	$	550	$	1,475,436	$	(4,369	)	$	131,452	$	1,603,069

The accompanying notes are an integral part of these consolidated financial statements.

REPLIGEN CORPORATION

CONSOLIDATED STATEMENTS OF CASH FLOWS

(Unaudited, amounts in thousands)


	Nine Months Ended September 30,						Six Months Ended June 30,
	2021			2020			2022			2021
Cash flows from operating activities:
Net income	$	99,181		$	40,228		$	96,825		$	65,683
Adjustments to reconcile net income to net cash provided by operating activities:
Inventory step-up amortization		1,868			—			0			1,598
Depreciation and amortization		27,430			19,581			23,933			17,420
Amortization of debt discount and issuance costs		8,592			8,175			905			5,690
Stock-based compensation expense		20,476			12,492			14,900			13,684
Deferred income taxes, net		6,071			72			738			5,266
Contingent consideration								(9,295	)		0
Other		677			228			276			103
Changes in operating assets and liabilities, excluding impact of acquisitions:
Accounts receivable		(51,927	)		(11,358	)		(8,433	)		(31,940	)
Unbilled receivables		(23	)		456
Inventories		(61,598	)		(22,767	)		(58,106	)		(42,773	)
Prepaid expenses and other assets		471			(2,908	)		2,402			(563	)
Operating lease right of use assets								(21,457	)		3,582
Other assets		751			(260	)		(406	)		1,748
Accounts payable		8,968			3,317			6,322			8,317
Accrued expenses		10,051			(2,712	)		(4,014	)		4,467
Operating lease liabilities								23,852			(3,713	)
Long-term liabilities		(1,592	)		3,210			392			(1,655	)
Total cash provided by operating activities		69,396			47,754			68,834			46,913
Cash flows from investing activities:
Acquisitions, net of cash acquired		(120,979	)		(28,445	)		0			71
Additions to capitalized software costs		(2,945	)		(3,585	)		(1,875	)		(2,191	)
Purchases of property, plant and equipment		(34,969	)		(11,067	)		(52,576	)		(24,078	)
Other investing activities								17			0
Total cash used in investing activities		(158,893	)		(43,097	)		(54,434	)		(26,198	)
Cash flows from financing activities:
Proceeds from exercise of stock options		1,991			7,088			463			860
Payment of tax withholding obligation on vesting of restricted stock		(1,252	)		(10	)		(14,759	)		0
Repayment of convertible senior notes		(9	)		—
Total cash provided by financing activities		730			7,078
Repayment of Convertible Senior Notes								(18	)		(8	)
Total cash (used in) provided by financing activities								(14,314	)		852
Effect of exchange rate changes on cash, cash equivalents and restricted cash		(7,427	)		4,160			(7,388	)		(4,532	)
Net (decrease) increase in cash, cash equivalents and restricted cash		(96,194	)		15,895			(7,302	)		17,035
Cash, cash equivalents and restricted cash, beginning of period		717,292			537,407			603,814			717,292
Cash and cash equivalents, end of period	$	621,098		$	553,302		$	596,512		$	734,327
Supplemental disclosure of non-cash investing and financing activities:
Assets acquired under operating leases	$	32,518		$	1,456		$	21,739		$	28,605
Fair value of 271,096 shares of common stock issued for acquisition of Avitide, Inc.	$	77,576		$	—
Fair value of earnouts related to acquisition of Avitide, Inc.	$	79,962		$	—

The accompanying notes are an integral part of these consolidated financial statements.

REPLIGEN CORPORATION

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)

Summary of Significant Accounting Policies

Basis of Presentation

The consolidated financial statements included herein have been prepared by Repligen Corporation (the “Company”, “Repligen”, “our” or “we”) in accordance with generally accepted accounting principles in the United States (“GAAP”) and pursuant to the rules and regulations of the United States Securities and Exchange Commission (“SEC”), for Quarterly Reports on Form 10-Q and Article 10 of Regulation S-X and do not include all of the information and footnote disclosures required by GAAP. These consolidated financial statements should be read in conjunction with the audited consolidated financial statements and accompanying notes thereto included in the Company’s Annual Report on Form 10-K for the fiscal year ended December 31, ~~2020,~~2021, which was filed with the SEC on February ~~24, 2021~~17, 2022 (“Form 10-K”).

The preparation of financial statements in conformity with GAAP requires management to make estimates and assumptions that affect the reported amounts of assets and liabilities and disclosure of contingent assets and liabilities at the date of the financial statements and the reported amounts of revenues and expenses during the reporting period. The business and economic uncertainty resulting from the novel coronavirus pandemic (“COVID-19”) ~~pandemic~~, the Russia-Ukraine conflict, supply chain challenges, cost pressure and the overall effects of the current high inflation environment on customers' purchasing patterns has made such estimates more difficult to calculate. Accordingly, actual results could differ from those estimates.

The consolidated financial statements include the accounts of the Company and its wholly-owned subsidiaries, Repligen Sweden AB, Repligen GmbH, Spectrum® LifeSciences LLC and its subsidiaries (“Spectrum”), C Technologies, Inc. ~~(“C Technologies”), Non-Metallic Solutions, Inc. (“NMS”)~~, ARTeSYN Biosolutions Holdings Ireland Limited ~~(“ARTeSYN”),~~and its subsidiaries, Polymem S.A. (“Polymem”), Avitide ~~Inc. (“Avitide”~~LLC, Newton T&M Corp. ("NTM"), Bio-Flex Solutions, L.L.C. ("BioFlex") and Repligen Singapore Pte. Ltd. All significant intercompany accounts and transactions have been eliminated in consolidation.

~~The~~Except for the change in the Company's policy on Convertible Senior Notes as required by Accounting Standards Update ("ASU" or "ASUs") 2020-06 and discussed in Note 7, "Convertible Senior Notes," to these consolidated financial statements, the Company made no material changes in the application of its significant accounting policies that were disclosed in its Form 10-K. In the opinion of management, the accompanying unaudited consolidated financial statements include all adjustments, consisting of only normal, recurring adjustments necessary for a fair presentation of the financial position, results of operations and cash flows. The results of operations for the interim periods presented are not necessarily indicative of results to be expected for the entire year. Certain prior year balances have been reclassified to conform to current year presentation.

Recent Accounting Standards Updates

We consider the applicability and impact of all ~~Accounting Standards Updates (“ASUs” or “ASU”)~~ASUs on the Company’s consolidated financial statements. Updates not listed below were assessed and determined to be either not applicable or are expected to have minimal impact on the Company’s consolidated financial position or results of operations. Recently issued ASUs that we feel may be applicable to the Company are as follows:

Recently Issued Accounting ~~Standard~~Standards Updates – ~~Not Yet~~ Adopted During the Fiscal Year

~~In August 2020,~~Effective January 1, 2022, the ~~Financial Accounting Standards Board (“FASB”) issued~~Company adopted ASU 2020-06, “Debt - Debt with Conversion and Other Options (Subtopic 470-20) and Derivatives and Hedging - Contracts in Entity’s Own Equity (Subtopic 815-40).” using the modified retrospective method of adoption. ASU 2020-06 simplifies the accounting for convertible debt instruments and convertible preferred stock by reducing the number of accounting models and the number of embedded conversion features that could be recognized separately from the primary contract. Consequently, a convertible instrument is now accounted for as a single liability measured at its amortized cost as long as no other features of such convertible instrument require bifurcation and recognition as derivatives. By removing those separation models, the interest rate of convertible debt instruments will typically be closer to the coupon interest rate when

applying the guidance in Topic 835, “Interest.” The Company now accounts for its 0.375% convertible senior notes due July 15, 2024 (the "2019 Notes") as a single liability measured at amortized cost. As a result, the adoption of ASU 2020-06 ~~also enhances transparency~~had a material impact on the Company's consolidated financial statements, resulting in adjustments of $39.1 million, $17.3 million and ~~improves disclosures for convertible instruments~~$27.6 million to the opening balances of additional paid-in capital, retained earnings and ~~earnings per share guidance.~~Convertible Senior Notes, net, respectively, on the Company's consolidated balance sheet as of January 1, 2022. Additionally, due to the adoption of ASU 2020-06, isthe Company reversed the remaining balance of the deferred tax liability of $6.4 million, which was initially recorded in connection with the 2019 Notes. See Note 7, “Convertible Senior Notes,” for more information, including our modified disclosures as required by ASU 2020-06 upon adoption.

Recently Issued Accounting Standard Updates – Not Yet Adopted

In March 2022, the Financial Accounting Standards Board issued ASU 2022-02, “Credit Losses (Topic 326): Troubled Debt Restructurings and Vintage Disclosures.” ASU 2022-02 eliminates the accounting guidance for Troubled Debt Restructurings by creditors that have adopted ASU 2016-13, “Financial Instruments – Credit Losses (Topic 326): Measurement of Credit Losses on Financial Instruments,” while enhancing disclosure requirements for certain loan refinancing and restructurings made to borrowers experiencing financial difficulty. Additionally, ASU 2022-02 adds the requirement for companies to disclose current period write-offs by year of origination for financing receivables. ASU 2022-02 will become effective for ~~annual reporting periods beginning after December 15, 2021, including interim periods within those fiscal years.~~the Company on January 1, 2023. Early adoption is permitted ~~but no earlier than fiscal years beginning after December 15, 2020. This update permits the use of either the modified retrospective or fully retrospective method of transition.~~if an entity has adopted ASU 2016-13. The Company is currently evaluating the timing and impact of the adoption of ASU ~~2020-06~~2022-02 on the ~~Company's~~Company’s consolidated financial ~~statements.~~statements and disclosures.

Fair Value Measurements

The Company uses various valuation approaches in determining the fair value of its assets and liabilities. The Company employs a hierarchy for inputs used in measuring fair value that maximizes the use of observable inputs and minimizes the use of unobservable inputs by requiring that observable inputs be used when available. Observable inputs are inputs that market participants would use in pricing the asset or liability based on market data obtained from sources independent of the Company. Unobservable inputs are inputs that reflect the Company’s assumptions about the inputs that market participants would use in pricing the asset or liability and are developed based on the best information available in the circumstances. The fair value hierarchy is broken down into three levels based on the source of inputs as follows:


Level 1 –	Valuations based on unadjusted quoted prices in active markets for identical assets or liabilities that the Company has the ability to access.

Level 2 –	Valuations based on quoted prices for similar assets or liabilities in active markets, quoted prices for identical or similar assets or liabilities in markets that are not active and models for which all significant inputs are observable, either directly or indirectly.

Level 3 –	Valuations based on inputs that are unobservable and significant to the overall fair value measurement.

The availability of observable inputs can vary among the various types of financial assets and liabilities. To the extent that the valuation is based on models or inputs that are less observable or unobservable in the market, the determination of fair value requires more judgment. In certain cases, the inputs used to measure fair value may fall into different levels of the fair value hierarchy. In such cases, for financial statement disclosure purposes, the level in the fair value hierarchy within which the fair value measurement is categorized is based on the lowest level input that is significant to the overall fair value measurement.

Fair Value Measured on a Recurring Basis

Financial assets and financial liabilities measured at fair value on a recurring basis consist of the following as of ~~September~~June 30, ~~2021~~2022 and December 31, ~~2020:~~2021 (amounts in thousands):


	As of September 30, 2021								As of June 30, 2022
	Level 1		Level 2		Level 3		Total		Level 1		Level 2		Level 3		Total
Assets:
Money market accounts	$	448,908	$	—	$	—	$	448,908	$	389,374	$	—	$	—	$	389,374

Liabilities:
Contingent consideration - earnout obligation	$	—	$	—	$	79,962	$	79,962
Short-term contingent consideration									$	—	$	—	$	17,046	$	17,046
Long-term contingent consideration									$	—	$	—	$	67,897	$	67,897

									As of December 31, 2021
									Level 1		Level 2		Level 3		Total
Assets:
Money market accounts									$	460,936	$	—	$	—	$	460,936

Liabilities:
Long-term contingent consideration									$	—	$	—	$	94,238	$	94,238

As of December 31, 2020

Level 1

Level 2

Level 3

Total

Assets:

Money market accounts

$
549,030

$
—

$
—

$
549,030

Cash and cash equivalents

As of ~~September~~June 30, ~~2021~~2022 and December 31, ~~2020,~~2021, cash and cash equivalents on the Company's consolidated balance sheets included $~~448.9~~389.4 million and $~~549.0~~460.9 million, respectively, in money market accounts. These funds are valued on a recurring basis using Level 1 inputs.

Contingent Consideration – Earnout

On September 20, 2021, the Company completed the acquisition of Avitide, Inc. ("Avitide") (the "Avitide Acquisition"), a privately-held affinity ligand discovery and development company headquartered in Lebanon, New Hampshire. The transaction consisted of upfront payments of $150.0 million, comprised of cash and the Company's common stock, and up to an additional $125.0 million (undiscounted) in contingent consideration for performance-based earnout payments made equally in cash and the Company's common stock over a three-year performance period beginning January 1, 2022 and ending December 31, 2024. ~~Refer to~~See Note 3, "Acquisitions" below for additional information.

9During 2022, there was a shift in revenue and volume projections, due to the expected timing of achievement over the

three-year performance period, and an increase in risk-free interest rates that are used to calculate the discount rate, that resulted in a material change in amounts reported as of June 30, 2022. A reconciliation of the change in the fair value of contingent consideration - earnout is included in the following table (amounts in thousands):


Balance as of December 31, 2021	$	94,238
Contingent consideration earnouts		(9,295	)
Balance as of June 30, 2022	$	84,943

Balance as of December 31, 2020

$
0

Acquisition date fair value of contingent consideration - earnout

79,962

Change in fair value

0

Balance as of September 30, 2021

$
79,962

The recurring Level 3 fair value measurement of our contingent consideration earnout that we expect to be required to settle include the following significant unobservable ~~inputs:~~inputs (amounts in thousands, except percent data):


Contingent Consideration Earnout	Fair Value as of September 20, 2021 (amounts in thousands)		Valuation Technique	Unobservable Input	Range	Weighted Average(1)	Fair Value as of June 30, 2022		Valuation Technique	Unobservable Input	Range	Weighted Average(1)
				Probability of						Probability of
Commercialization-based			Monte Carlo	Success	100%	100%			Monte Carlo	Success	100%	100%
payments	$	28,553	Simulation	Earnout Discount Rate	1.4%-2.6%	2%	$	28,390	Simulation	Earnout Discount Rate	4.5%-5.8%	5.1%

				Volatility	32.8%	32.8%				Volatility	23.7%	23.7%
Revenue and Volume-			Monte Carlo	Revenue & Volume					Monte Carlo	Revenue & Volume
based payments	$	51,409	Simulation	Discount Rate	9.4%	9.4%	$	56,553	Simulation	Discount Rate	7.4%	7.4%
				Earnout Discount Rate	1.4%-2.6%	2%				Earnout Discount Rate	4.5%-5.8%	5.1%

(1)

Unobservable inputs were weighted by the relative fair value of the contingent consideration liability.

The Company estimates the fair value of the contingent consideration earnouts at each subsequent reporting period using a Monte Carlo simulation. Changes in the projected performance of the acquired business could result in a higher or lower contingent consideration obligation in the future.

~~There were~~ 0 changes in revenue projections during the period from September 20, 2021, the date of the Avitide Acquisition, and September 30, 2021 that would cause a material change in amounts reported as of September 30, 2021.

Fair Value Measured on a Nonrecurring Basis

During the ~~nine~~three and six months ended ~~September~~June 30, ~~2021,~~2022, there were no re-measurements to fair value of financial assets and liabilities that are measured at fair value on a nonrecurring basis.

Convertible Senior Notes

In July 2019, the Company issued $287.5 million aggregate principal amount of the ~~Company’s~~ ~~0.375% convertible senior notes due~~ ~~July 15, 2024~~ ~~(the “2019 Notes”).~~2019 Notes. Interest is payable semi-annually in arrears on January 15 and July 15 of each year. The 2019 Notes will mature on July 15, 2024, unless earlier converted or repurchased in accordance with their terms. At ~~September~~June 30, ~~2021~~2022 and December 31, ~~2020,~~2021, the carrying value of the 2019 Notes was $~~252.3~~283.7 million and $~~243.7~~255.3 million, respectively, net of unamortized discount and issuance costs, and the fair value of the 2019 Notes was $~~732.9~~432.3 million and $~~501.0~~678.5 million, respectively. The fair value of the 2019 Notes is a Level 1 valuation and was determined based on the most recent trade activity of the 2019 Notes as of ~~September~~June 30, ~~2021.~~2022. The 2019 Notes are discussed in more detail in Note ~~12,~~7, “Convertible ~~senior notes”~~Senior Notes” to ~~Part II, Item 8, “Financial Statements and Supplementary Data”~~ ~~to our 2020 Annual Report on Form 10-K (“Form 10-K"), which was filed with the SEC on February 24, 2021.~~this report.

Acquisitions

2021 Acquisitions

Bio-Flex Solutions L.L.C. and Newton T&M Corp.

On November 29, 2021, the Company entered into an Equity Purchase Agreement with BioFlex, NTM and each of Ralph Meola and Jason Nisler (the "Equity Purchase Agreement"), to acquire 100% of the outstanding securities of BioFlex and NTM (collectively, the “NTM Acquisition”). The transaction closed on December 16, 2021.

NTM, which is headquartered in Newton, New Jersey, is the parent company of BioFlex and focuses on manufacturing of products, while BioFlex, also headquartered in Newton, New Jersey, commercializes branded products to biotech customers. The NTM Acquisition complements and expands the Company's filtration offering paths as the industry migrates to single-use flow paths solutions for monoclonal antibody, vaccine and cell and gene therapy ("C&GT") applications, with a focus on single-use fluid management components, including single-use clamps, adapters, end caps and hose assemblies. The NTM Acquisition streamlines and increases control over many components in the Company's single-use supply chain which ultimately should drive reduced lead-times for Repligen customers in the coming years.

Consideration Transferred

The NTM Acquisition was accounted for as a purchase of businesses under ASC 805, “Business Combinations,” and the Company engaged a third-party valuation firm to assist with the valuation of the business acquired. Under the terms of the Equity Purchase Agreement, all outstanding shares of capital stock of BioFlex were acquired for consideration with a value totaling $31.6 million, which includes $3.0 million deposited into an escrow against which the Company may make claims for indemnification.

Under the acquisition method of accounting, the assets acquired and liabilities assumed of BioFlex were recorded as of the acquisition date, at their respective fair values, and consolidated with those of the Company. The fair value of the net assets acquired is estimated to be $4.6 million, the fair value of the intangible assets acquired is estimated to be $17.2 million and the residual goodwill is estimated to be $9.8 million. The estimated consideration and preliminary purchase price information has been prepared using a preliminary valuation. Acquisition-related costs are not included as a component of consideration transferred but are expensed in the periods in which costs are incurred. The Company has incurred $1.9 million of transaction and integration costs associated with the NTM Acquisition from the date of acquisition to June 30, 2022, with $0.7 million and $1.6 million of transaction and integration costs incurred during the three and six months ended June 30, 2022, respectively. The transaction costs are included in operating expenses in the consolidated statements of comprehensive income for the periods ended June 30, 2022.

The preparation of the valuation required the use of significant assumptions and estimates. Critical estimates included, but were not limited to, future expected cash flows, including projected revenues and expenses and the applicable discount rates. These estimates were based on assumptions that the Company believes to be reasonable. However, actual results may differ from these estimates.

Fair Value of Net Assets Acquired

The preliminary allocation of purchase price is based on the fair value of assets acquired and liabilities assumed as of the acquisition date, based on the preliminary valuation. As of June 30, 2022, the purchase accounting for this acquisition had not yet been finalized. As additional information becomes available, the Company may further revise its preliminary purchase price allocation during the remainder of the measurement period. Any such revisions or changes may have a material impact on our accounting treatment of the NTM Acquisition. The final allocation may include changes to deferred tax assets and other assets and liabilities.

The components and estimated allocation of the purchase price consist of the following (amounts in thousands):


Cash and cash equivalents	$	2,870
Accounts receivable		1,408
Inventory		741
Prepaid expenses and other current assets		126
Property and equipment		34
Operating lease right of use asset		1,034
Customer relationships		13,240
Developed technology		3,540
Trademark and tradename		310
Non-competition agreements		60
Goodwill		9,804
Long term deferred tax asset		111
Accounts payable		(224	)
Accrued liabilities		(450	)
Operating lease liability		(1,030	)
Operating lease liability, long-term		(3	)
Fair value of net assets acquired	$	31,571

During the first half of 2022, the Company recorded net working capital adjustments of approximately $0.4 million related to pre-acquisition liabilities, which are included in goodwill and accrued liabilities in the table above.

Acquired Goodwill

The goodwill of $9.8 million represents future economic benefits expected to arise from anticipated synergies from the integration of BioFlex and NTM into the Company. These synergies include certain cost savings, operating efficiencies and other strategic benefits projected to be achieved as a result of the NTM Acquisition. Substantially all of the goodwill recorded is expected to be deductible for income tax purposes.

Intangible Assets

The following table sets forth the components of the identified intangible assets associated with the NTM Acquisition and their estimated useful lives:


	Useful life	Fair Value
		(Amounts in thousands)

Customer relationships	10 years	$	13,240
Developed technology	11 years		3,540
Trademark and tradename	15 years		310
Non-competition agreements	3 years		60
		$	17,150

Avitide, Inc.

On September 16, 2021, the Company entered into an Agreement and Plan of Merger and Reorganization (“Avitide Merger Agreement”) with Avalon Merger Sub, Inc., a Delaware corporation and a wholly owned direct subsidiary of the Company, ~~(“First Merger Sub”),~~ Avalon Merger Sub LLC, a Delaware limited liability company and a wholly owned direct subsidiary of the Company, ~~(“Second Merger Sub” and together with First Merger Sub, the “Merger Subs”),~~ Avitide, ~~Inc.,~~ a Delaware corporation, and Shareholder Representative Services LLC, a Colorado limited liability company, solely in its capacity as the representative, agent and attorney-in-fact of Avitide's securityholders ~~(the “Securityholder Representative”)~~ to purchase Avitide. The transaction closed on September 20, 2021 ~~and~~ on the terms set forth in the Avitide Merger Agreement.

Avitide, which is headquartered in Lebanon, New Hampshire, offers diverse libraries and leading technology in affinity ligand discovery and development resulting in best-in-class ligand discovery and development lead-times. The acquisition gives the Company a new platform for affinity resin development, including ~~gene therapy,~~C&GT, and advances and expands the Company’s proteins and chromatography franchise to address the unique purification needs of gene therapies and other emerging modalities.

Consideration Transferred

The Avitide Acquisition was accounted for as a purchase of a business under ASC 805, “Business ~~Combinations”~~Combinations,” and the Company engaged a third-party valuation firm to assist with the valuation of the business acquired. Under the terms of the Avitide Merger Agreement, all outstanding shares of capital stock of Avitide were cancelled and converted into the right to receive merger consideration with a value totaling up to $275.0 million, which consisted of upfront payments in aggregate of $150.0 million ($149.4 million, net of cash acquired) and up to an additional $125.0 million (undiscounted) in contingent consideration earnout payments if certain performance targets are achieved. Total consideration paid also included $0.8 million deposited into an escrow account against which the Company may make claims for indemnification. The Avitide Acquisition was funded through payment of $75.0 million in cash, the issuance of 271,096 unregistered shares of the Company’s common stock totaling $~~77.6~~83.0 million and contingent consideration with a fair value of approximately $~~80.0~~88.4 million.

Under the acquisition method of accounting, the assets acquired and liabilities assumed of Avitide were recorded as of the acquisition date, at their respective fair values, and consolidated with those of the Company. The fair value of the net ~~liabilities assumed~~assets acquired is estimated to be $~~5.2~~2.1 million, the fair value of the intangible assets acquired is estimated to be $~~44.3~~46.7 million and the residual goodwill is estimated to be $~~193.5~~197.5 million. The estimated consideration and preliminary purchase price information has been prepared using a preliminary valuation. Acquisition-related costs are not included as a component of consideration transferred but are expensed in the periods in which costs are incurred. The Company has incurred $~~0.6~~3.9 million of transaction and integration costs associated with the Avitide Acquisition from the date of acquisition to ~~September~~June 30, ~~2021.~~2022, with $0.7 million and $1.3 million of transaction and integration costs incurred during the three and six months ended June 30, 2022, respectively. The transaction costs are included in operating expenses in the consolidated statements of comprehensive income for the ~~period~~periods ended ~~September~~June 30, ~~2021.~~2022. During 2022, due to the change in market inputs used to prepare the valuation of the contingent

consideration obligation, the Company also recorded contingent consideration adjustments of ($6.9) million and ($9.3) million to the Company's consolidated statements of comprehensive income for the three and six months ended June 30, 2022, respectively. See Note 2, "Fair Value Measurements" for more information.

Total consideration transferred is as follows (amounts in thousands):


Cash consideration	$	75,004	$	74,962
Equity consideration		77,576		82,968
Contingent consideration - earnout		79,962		88,373
Fair value of net assets acquired	$	232,542	$	246,303

Fair Value of Net Assets Acquired

The preliminary allocation of purchase price is based on the fair value of assets acquired and liabilities assumed as of the acquisition date, based on the preliminary valuation. ~~The fair value~~As of June 30, 2022, the ~~contingent consideration – earnout was measured using a Monte Carlo simulation. The~~ purchase accounting for this acquisition ishad not yet been finalized. As additional information becomes available, the Company may further revise its preliminary purchase price allocation ~~including the fair value of the contingent consideration - earnout~~ during the remainder of the measurement ~~period.~~period (which will not exceed 12 months from September 20, 2021). Any such revisions or changes may have a material impact on our accounting treatment of the Avitide Acquisition. The final allocation may include changes ~~to: (1)~~to long-term deferred liabilities and goodwill. Upon conclusion of the measurement period or final determination of the values of assets acquired or liabilities assumed, whichever comes first, any subsequent adjustments will be recorded to our consolidated statement of comprehensive income.

deferred revenue; (2) inventory; (3) deferred tax liabilities, net; (4) allocations to intangible assets such as tradenames, developed technology and customer relationships as well as goodwill; (5) final consideration paid related to working capital adjustments; (6) noncurrent contingent consideration; and (7) other assets and liabilities.

The components and estimated allocation of the purchase price consist of the following (amounts in thousands):


Cash and cash equivalents	$	572		$	572
Accounts receivable		228			228
Inventory		400			332
Prepaid expenses and other current assets		114			114
Property and equipment		1,862			1,862
Operating lease right of use asset		2,459			3,648
Customer relationships		23,310			24,580
Developed technology		19,610			20,650
Trademark and tradename		1,150			1,210
Non-competition agreements		200			210
Goodwill		193,463			197,461
Long term deferred tax asset					1,540
Accounts payable		(215	)		(215	)
Accrued liabilities		(2,183	)		(2,183	)
Operating lease liability		(782	)		(698	)
Operating lease liability, long-term		(1,606	)		(2,950	)
Long term deferred tax liability		(5,982	)
Other liabilities		(58	)		(58	)
Fair value of net assets acquired	$	232,542		$	246,303

Acquired Goodwill

The goodwill of $~~193.5~~197.5 million represents future economic benefits expected to arise from anticipated synergies from the integration of Avitide. These synergies include certain cost savings, operating efficiencies and other strategic benefits projected to be achieved as a result of the Avitide Acquisition. Substantially all of the goodwill recorded is expected to be nondeductible for income tax purposes. In June 2022, the Company recorded an adjustment to goodwill of $1.8 million related to a change in estimated tax benefits associated with the net operating loss carryforward filed on the Avitide pre-acquisition tax return.

Intangible Assets

The following table sets forth the components of the identified intangible assets associated with the Avitide Acquisition and their estimated useful lives:


	Useful life	Fair Value		Useful life	Fair Value
		(Amounts in thousands)			(Amounts in thousands)

Customer relationships	13 years	$	23,310	13 years	$	24,580
Developed technology	15 years		19,610	15 years		20,650
Trademark and tradename	18 years		1,150	18 years		1,210
Non-competition agreements	3 years		200	3 years		210
		$	44,270		$	46,650

Polymem S.A.

On June 22, 2021, the Company entered into a Stock Purchase Agreement with Polymem, ~~S.A. (“Polymem”),~~ a company organized under the laws of France, and Jean-Michel Espenan and Franc Saux, acting together jointly and severally as the representatives of the sellers pursuant to which the Company acquired all of the outstanding common stock of Polymem for ~~approximately~~ $47.0 million. The transaction closed on July 1, 2021 (the “Polymem ~~Acquisition.”~~Acquisition”).

Polymem, which is headquartered in, Toulouse, France, is a manufacturer of hollow fiber membranes, membrane modules and systems for industrial and bioprocessing applications. Polymem products will complement and expand the Company’s portfolio of hollow fiber systems and consumables. The acquisition substantially increases Repligen’s membrane and module

manufacturing capacity and establishes a world-class center of excellence in Europe to address the accelerating global demand for these innovative products.

Consideration Transferred

The ~~Company~~Polymem Acquisition was accounted for ~~the Polymem Acquisition~~ as a purchase of a business under ASC 805, “Business ~~Combinations”~~Combinations,” and the Company engaged a third-party valuation firm to assist with the valuation of the business acquired. Payment for the transaction was denominated in Euros but is reflected here in U.S. dollars for presentation purposes based on an exchange rate of 0.8437 as of July 1, 2021, the date of acquisition. Total consideration paid was approximately ~~$47.0~~$47.0 million, which included approximately $4.3 million deposited into an escrow account against which the Company may make claims for indemnification.

Under the acquisition method of accounting, the assets acquired and liabilities assumed of Polymem were recorded as of the acquisition date, at their respective fair values, and consolidated with those of the Company. The fair value of the net ~~assumed liabilities~~assets acquired is approximately $2.2 million, the fair value of the intangible assets acquired is approximately $~~25.7~~9.1 million and the residual goodwill is approximately $~~23.5~~35.7 million. Acquisition-related costs are not included as a component of consideration transferred but are expensed in the periods in which costs are incurred. The Company has incurred $~~1.9~~6.3 million of transaction and integration costs associated with the Polymem Acquisition from the date of acquisition to ~~September~~June 30, ~~2021.~~2022, with $1.6 million and $3.2 million of transaction and integration costs incurred during the three and six months ended June 30, 2022, respectively. The transaction costs are included in operating expenses in the consolidated statements of comprehensive income for the ~~period~~periods ended ~~September~~June 30, ~~2021.~~2022.

Fair Value of Net Assets Acquired

The ~~preliminary~~ allocation of purchase price is based on the fair value of assets acquired and liabilities assumed as of the acquisition date, based on the ~~preliminary valuation. As additional information becomes available,~~final valuation of Polymem. The Company has made appropriate adjustments to the ~~Company may further revise its preliminary~~ purchase price allocation during the ~~remainder of the~~ measurement period, ~~(which will not exceed 12 months from~~which ended on July 1, ~~2021). Any such revisions or changes may have a material impact on our accounting treatment of the Polymem Acquisition.~~2022.

The components and ~~estimated~~final allocation of the purchase price consist of the following (amounts in thousands):



Cash and cash equivalents	$	353		$	353
Net working capital (excluding cash and inventory step-up)		375			414
Inventory step-up		543			543
Operating lease right of use assets		1,424			1,424
Property and equipment		3,145			3,145
Other assets		41			41
Customer relationships		17,234
Developed technology		7,545			8,274
Trademark and tradenames		557			510
Non-compete agreements		344			312
Goodwill		23,453			35,680
Operating lease liability		(1,253	)		(1,253	)
Long term deferred tax liability		(6,646	)		(2,327	)
Other long-term liabilities		(142	)		(143	)
Fair value of net assets acquired	$	46,973		$	46,973

The preliminary purchase price allocation is subject to adjustment as purchase accounting is finalized. The final purchase price allocation will be determined upon completion of final valuation analysis and the fair value allocation of assets acquired and liabilities assumed could differ materially from the preliminary valuation analysis. The final allocation may include changes to: (1) deferred tax liabilities; (2) allocations to intangible assets such as tradenames, developed technology an customer relationships as well as goodwill; (3) final consideration related to working capital adjustments; and (4) other assets and liabilities

Acquired Goodwill

The goodwill of approximately $~~23.5~~35.7 million represents future economic benefits expected to arise from anticipated synergies from the integration of Polymem. These synergies include certain cost savings, operating efficiencies and other strategic

benefits projected to be achieved as a result of the Polymem Acquisition. Substantially all of the goodwill recorded is expected to be nondeductible for income tax purposes.

Intangible Assets

The following table sets forth the components of the identified intangible assets associated with the Polymem Acquisition and their estimated useful lives:

Useful life

Fair Value

(Amounts in thousands)

Customer relationships

14 years

$
17,234

Developed technology

13 years

7,545

Trademark and tradename

14 years

557

Non-competition agreements

5 years

344

$
25,680

~~2020 Acquisitions~~

~~ARTeSYN Biosolutions Holdings Ireland Limited~~

On October 27, 2020, the Company entered into an Equity and Asset Purchase Agreement with ARTeSYN, a company organized under the laws of Ireland, Third Creek Holdings LLC, a Nevada limited liability company (“Third Creek”), Alphinity, LLC, a Nevada limited liability company (“Alphinity”, and together with Third Creek the “ARTeSYN Sellers”), and Michael Gagne, solely in his capacity as the representative of the ARTeSYN Sellers, pursuant to which the Company acquired (i) all of the outstanding equity securities of ARTeSYN and (ii) certain assets from Alphinity related to the business of ARTeSYN (collectively, the “ARTeSYN Acquisition”) for approximately $~~200~~ ~~million, comprised of approximately $130~~ ~~million in cash to the ARTeSYN Sellers and approximately $~~70 ~~million in the Company’s common stock to Third Creek. The transaction closed on December 3, 2020.~~

ARTeSYN is headquartered in Waterford, Ireland and conducts its operations in Ireland, the United States and Estonia. Its suite of single-use solutions has been created with the goal of enabling “abundance in medicine” by allowing greater efficiency in biologics manufacturing. The ARTeSYN team has created a number of solutions targeting the single-use space from single-use valves with fully disposable valve liners, XO® skeletal supports, a hybrid small parts offering for de-bottlenecking traditional facilities, and fully automated SU process systems that have quickly become leading solutions in the bioprocessing industry. ARTeSYN has established downstream processing leadership with a suite of state of the art single-use systems for chromatography, filtration, continuous manufacturing and media/buffer prep workflows. In addition, the Company has integrated unique flow path assemblies utilizing the Company’s silicone extrusion and molding technology, to deliver highly differentiated, low hold-up volume systems that minimize product loss during processing. The ARTeSYN portfolio expands on the market success of the Company’s hollow fiber systems and complements its chromatography and TFF filtration product lines.

~~Consideration Transferred~~

~~The ARTeSYN Acquisition was accounted for as a purchase of a business under ASC 805,~~ ~~“Business Combinations”. The ARTeSYN Acquisition was funded through payment of $130.7~~ ~~million in cash, as well as issuance of~~ ~~372,990~~ ~~unregistered shares of the Company’s common stock totaling $69.4~~ ~~million, contingent consideration of approximately $1.5~~ ~~million, and settlement of preexisting invoices with the Company of approximately $2.3~~ ~~million, for a total purchase price of $204.0~~ million. Under the acquisition method of accounting, the assets acquired and liabilities assumed of ARTeSYN were recorded as of the acquisition date, at their respective fair values, and consolidated with those of the Company. The fair value of the net tangible assets acquired is estimated to be $~~8.0~~ ~~million, the fair value of the intangible assets acquired is estimated to be $67.4~~ ~~million, and the residual goodwill is estimated to be $128.6~~ ~~million. The estimated consideration and purchase price information was prepared using a valuation. Payment of the final consideration for working capital was made in April 2021.~~

~~estimates were based on assumptions that the Company believes to be reasonable. However, actual results may differ from these estimates.~~

~~Total consideration transferred is as follows (amounts in thousands):~~

Cash consideration

$
130,713

Equity consideration

69,422

Contingent consideration

1,548

Settlement of preexisting liabilities

2,310

Fair value of net assets acquired

$
203,993

~~Acquisition related costs are not included as a component of consideration transferred but are expensed in the periods in which the costs are incurred. The Company incurred $4.0~~ ~~million in transaction and integration costs associated with the ARTeSYN Acquisition from the date of acquisition to December 31, 2020, and an additional $3.4~~ million of transaction and integration costs during 2021. The transaction costs are included in operating expenses in the consolidated statements of comprehensive income for the period ended September 30, 2021.

~~The consideration transferred includes approximately $1.5~~ million related to consideration that was deferred at the acquisition date, with payment to the ARTeSYN Sellers contingent upon recognizing revenue on a large-scale system within 120 days of the acquisition date. This consideration is recorded at its estimated fair value as of the acquisition date, which includes the assumption of high probability of such revenue being recognized.

~~Fair Value of Net Assets Acquired~~

The preliminary allocation of purchase price is based on the fair value of assets acquired and liabilities assumed as of the acquisition date, based on the preliminary valuation. As additional information becomes available, the Company may further revise its preliminary purchase price allocation during the remainder of the measurement period (which will not exceed 12 months from December 3, 2020). Any such revisions or changes may be material. The final allocation may include changes to deferred tax liabilities, net and goodwill. Upon conclusion of the measurement period or final determination of the values of assets acquired or liabilities assumed, whichever comes first, any subsequent adjustments will be recorded to our consolidated statements of comprehensive income. During 2021, the Company recorded net working capital adjustments of $~~0.1~~ ~~million related to settlement of pre-acquisition liabilities, which offset goodwill in the table below.~~

~~The components and estimated allocation of the purchase price consist of the following (amounts in thousands):~~

Cash and cash equivalents

$
2,982

Accounts receivable

4,811

Inventory

8,592

Prepaid expenses and other current assets

5,561

Property and equipment

1,836

Operating lease right of use asset

1,611

Other noncurrent assets

26

Customer relationships

38,400

Developed technology

27,060

Trademark and tradename

1,630

Non-competition agreements

300

Goodwill

128,598

Accounts payable

(2,251
)
Accrued liabilities

(8,706
)
Deferred revenue

(3,583
)
Deferred tax liabilities, net

(1,240
)
Notes payable

(24
)
Operating lease liability

(417
)
Operating lease liability, long-term

(1,193
)
Fair value of net assets acquired

$
203,993

~~Acquired Goodwill~~

~~The goodwill of $128.6~~ million represents future economic benefits expected to arise from synergies from combining operations and commercial organizations to increase market presence and the extension of existing customer relationships. Substantially all of the goodwill recorded is expected to be deductible for income tax purposes.

~~Intangible Assets~~

~~The following table sets forth the components of the identified intangible assets associated with the ARTeSYN Acquisition and their estimated useful lives:~~

Useful life

Fair Value

(Amounts in thousands)

Customer relationships

17 years

$
38,400

Developed technology

15 years

27,060

Trademark and tradename

21 years

1,630

Non-competition agreements

3 years

300

$
67,390

~~Non-Metallic Solutions, Inc.~~

On October 15, 2020, the Company entered into a Stock Purchase Agreement with NMS, a Massachusetts corporation, and each of William Malloneé and Derek Masser, the legal and beneficial owners of NMS, to purchase NMS, which transaction subsequently closed on October 20, 2020 (the “NMS Acquisition”).

NMS, headquartered in Auburn, Massachusetts, is a manufacturer of fabricated plastics, custom containers, and related assemblies and components used in the manufacturing of biologic drugs. The acquisition of NMS allows Repligen to expand its line of single-use systems and associated integrated flow path assemblies and streamline the supply chain for current products, providing more flexibility to scale and expand the Company's single-use and systems portfolios.

~~Consideration Transferred~~

~~The NMS Acquisition was accounted for as a purchase of a business under ASC 805,~~ ~~“Business Combinations.”~~ ~~Total consideration paid was $16.1~~ ~~million, which included $1.3~~ ~~million deposited into an escrow account against which the Company may make claims for indemnification. The fair value of the net tangible assets acquired was $0.9~~ ~~million, the fair value of the intangible assets acquired was $8.5~~ ~~million, and the residual goodwill was $6.7~~ ~~million. Acquisition-related costs are not included as a component of consideration transferred but are expensed in the periods in which costs are incurred. The Company incurred $0.2~~ ~~million of transaction and integration costs associated with the NMS Acquisition from the date of acquisition to December 31, 2020, and $0.4~~ ~~million for the nine months ended September 30, 2021. The transaction costs are included in SG&A expenses in the consolidated statements of comprehensive income.~~

~~Fair Value of Net Assets Acquired~~

The allocation of purchase price is based on the fair value of assets acquired and liabilities assumed as of the acquisition date, based on the preliminary valuation. We have made appropriate adjustments to the purchase price allocation during the measurement period, which ended on October 20, 2021.

~~The components and allocation of the purchase price consist of the following (amounts in thousands):~~

Cash and cash equivalents

$
1,163

Accounts receivable

415

Inventory

334

Prepaid expenses and other current assets

13

Property and equipment

73

Operating lease right of use asset

194

Customer relationships

6,370

Developed technology

1,810

Trademark and tradename

190

Non-competition agreements

90

Goodwill

6,713

Deferred tax assets

24

Accounts payable

(96
)
Accrued liabilities

(999
)
Operating lease liability

(136
)
Operating lease liability, long-term

(59
)
Fair value of net assets acquired

$
16,099

~~Acquired Goodwill~~

~~The goodwill of $6.7~~ million represents future economic benefits expected to arise from anticipated synergies from the integration of NMS. These synergies include certain cost savings, operating efficiencies and other strategic benefits projected to be achieved as a result of the NMS Acquisition. Substantially all of the goodwill recorded is expected to be deductible for income tax purposes. In February 2021, the Company recorded an adjustment to goodwill of $~~0.1~~ ~~million related to the finalization of the working capital true-up.~~

~~Intangible Assets~~

~~The following table sets forth the components of the identified intangible assets associated with the NMS Acquisition and their estimated useful lives:~~


	Useful life	Fair Value		Useful life	Fair Value
		(Amounts in thousands)			(Amounts in thousands)

Customer relationships	14 years	$	6,370
Developed technology	12 years		1,810	13 years	$	8,274
Trademark and tradename	15 years		190	14 years		510
Non-competition agreements	3 years		90	5 years		312
		$	8,460		$	9,096

Revenue Recognition

The Company generates revenue from the sale of bioprocessing products, equipment devices and related consumables used with these equipment devices to customers in the life science and biopharmaceutical industries. Under ASC 606, “Revenue from Contracts with Customers,” revenue is recognized when, or as, obligations under the terms of a contract are satisfied, which occurs when control of the promised products or services is transferred to customers.

Disaggregation of Revenue

Revenues for the three and ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021 were as follows:


	Three Months Ended				Nine Months Ended
	September 30,				September 30,				Three Months Ended June 30,				Six Months Ended June 30,
	2021		2020		2021		2020		2022		2021		2022		2021
	(Amounts in thousands)								(Amounts in thousands)
Product revenue	$	178,177	$	94,029	$	483,834	$	257,521	$	207,597	$	162,920	$	413,960	$	305,657
Royalty and other income		39		31		179		91		36		40		73		140
Total revenue	$	178,216	$	94,060	$	484,013	$	257,612	$	207,633	$	162,960	$	414,033	$	305,797

1715

When disaggregating revenue, the Company considered all of the economic factors that may affect its revenues. Because substantially all of its revenues are from bioprocessing customers, there are no differences in the nature, timing and uncertainty of the Company’s revenues and cash flows from any of its product lines. However, given that the Company’s revenues are generated in different geographic regions, ~~factors such as~~ regulatory, economic and geopolitical factors within those regions could impact the nature, timing and uncertainty of the Company’s revenues and cash flows. In addition, a significant portion of the Company’s ~~revenues~~revenue is generated from a small number of customers; therefore, economic factors specific to these customers could impact the nature, timing and uncertainty of the Company’s revenues and cash flows.

Disaggregated revenue from contracts with customers by geographic region and revenue from significant customers can be found in Note 14, “Segment Reporting,” included in this report.

~~Revenue from customers that represented~~ 10~~% or more of the Company’s total revenue for the three months ended September 30, 2021 and 2020 came from sales to Pfizer Inc. during the three months ended September 30, 2021, which generated $19.1~~ ~~million, or~~ 11~~% of the Company's total revenue for the period. Revenue from customers that represented~~ 10~~% or more of the Company's total revenue for the nine months ended September 30, 2021 and 2020 came from sales to MilliporeSigma during the nine months ended September 30, 2020, which generated $29.4~~ ~~million in revenue, or~~ 11~~% of the Company's total revenue for the period. There was~~ 0 ~~revenue from customers that represented~~ 10~~% or more of the Company's total revenue for the other periods presented.~~

For more information regarding our product revenue, see Note 5,6, “Revenue Recognition” included in Part II, Item 8, “Financial Statements and Supplementary Data” to our Form 10-K.

Contract Balances from Contracts with Customers

The following table provides information about receivables and deferred revenue from contracts with customers as of ~~September~~June 30, ~~2021~~2022 (amounts in thousands):

2021

Balances from contracts with customers only:

Accounts receivable, net of reserves

$
122,048

Deferred revenue (included in accrued liabilities in the consolidated balance sheets)

$
16,337

Revenue recognized during the nine-month period ended September 30, 2021 relating to:

The beginning deferred revenue balance

$
13,071


	June 30,		December 31,
	2022		2021
Balances from contracts with customers only:
Accounts receivable	$	121,050	$	117,420
Deferred revenue (included in accrued liabilities in the consolidated balance sheets)	$	22,161	$	14,848
Revenue recognized during periods presented relating to:
The beginning deferred revenue balance	$	11,215	$	13,708

The timing of revenue recognition, billings and cash collections results in the accounts receivable and deferred revenue balances on the Company’s consolidated balance sheets.

A contract asset is created when the Company satisfies a performance obligation by transferring a promised good to the customer. Contract assets may represent conditional or unconditional rights to consideration. The right is conditional and recorded as a contract asset if the Company must first satisfy another performance obligation in the contract before it is entitled to payment from the customer. Contract assets are transferred to billed receivables once the right becomes unconditional. If the Company has the unconditional right to receive consideration from the customer, the contract asset is accounted for as a billed receivable and presented separately from other contract assets. A right is unconditional if nothing other than the passage of time is required before payment of that consideration is due.

When consideration is received, or such consideration is unconditionally due, from a customer prior to transferring goods or services to the customer under the terms of a contract, a contract liability is recorded. Contract liabilities are recognized as revenue after control of the products or services is transferred to the customer and all revenue recognition criteria have been met.

Goodwill and Intangible Assets

Goodwill

Goodwill represents the difference between the purchase price and the estimated fair value of identifiable assets acquired and liabilities assumed. Goodwill acquired in a business combination and determined to have an indefinite useful life is not

amortized, but instead is tested for impairment at least annually in accordance with ASC 350, “Intangibles – Goodwill and Other”.

The following table represents the change in the carrying value of goodwill for the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 (amounts in thousands):

Balance at December 31, 2020

$
618,305

Measurement period adjustment - NMS

(71
)
Measurement period adjustments - ARTeSYN

(60
)
Acquisition of Polymem

23,453

Acquisition of Avitide

193,463

Cumulative translation adjustment

(1,531
)
Balance at September 30, 2021

$
833,559


Balance as of December 31, 2021	$	860,362
Measurement period adjustment - BioFlex		(376	)
Measurement period adjustment - Avitide		(1,784	)
Cumulative translation adjustment		(3,874	)
Balance as of June 30, 2022	$	854,328

During each of the fourth quarters of 2021, 2020 ~~2019~~ and ~~2018,~~2019, the Company completed its annual impairment assessments and concluded that goodwill was not impaired in any of those years. The Company has not identified any “triggering” events which indicate an impairment of goodwill in the three and ~~nine~~six months ended ~~September~~June 30, ~~2021.~~2022.

Intangible Assets

Intangible assets with a definitive life are amortized over their useful lives using the straight-line method, and the amortization expense is recorded within cost of product revenue and ~~SG&A~~selling, general and administrative expenses in the Company’s statements of comprehensive income. Intangible assets and their related useful lives are reviewed at least annually to determine if any adverse conditions existed that would indicate the carrying value of these assets may not be recoverable. More frequent impairment assessments are conducted if certain conditions exist, including a change in the competitive landscape, any internal decisions to pursue new or different technology strategies, a loss of a significant customer, or a significant change in the marketplace, including changes in the prices paid for ~~our~~the Company's products or changes in the size of the market for the Company’s products. An impairment results if the carrying value of the asset exceeds the estimated fair value of the asset. If the estimate of an intangible asset’s remaining useful life is changed, the remaining carrying amount of the intangible asset is amortized prospectively over the revised remaining useful life. The Company continues to believe that its intangible assets are recoverable at ~~September~~June 30, ~~2021.~~2022.

Indefinite-lived intangible assets are reviewed for impairment at least annually. There has been 0 impairment of the Company’s intangible assets for the periods presented.

Intangible assets, net consisted of the following at ~~September~~June 30, ~~2021:~~2022:


	September 30, 2021									June 30, 2022
	Gross Carrying Value		Accumulated Amortization			Net Carrying Value		Weighted Average Useful Life (in years)		Gross Carrying Value		Accumulated Amortization			Net Carrying Value		Weighted Average Useful Life (in years)
	(Amounts in thousands)									(Amounts in thousands)
Finite-lived intangible assets:
Technology - developed	$	141,039	$	(19,426	)	$	121,613		17	$	145,304	$	(25,862	)	$	119,442		17
Patents		240		(240	)		—		8		240		(240	)		0		8
Customer relationships		257,297		(47,363	)		209,934		15		253,221		(58,709	)		194,512		15
Trademarks		7,367		(771	)		6,596		19		7,675		(1,096	)		6,579		19
Other intangibles		2,826		(1,506	)		1,320		4		2,801		(1,826	)		975		4
Total finite-lived intangible assets		408,769		(69,306	)		339,463		16		409,241		(87,733	)		321,508		16
Indefinite-lived intangible asset:
Trademarks		700		—			700		—		700		—			700		—
Total intangible assets	$	409,469	$	(69,306	)	$	340,163			$	409,941	$	(87,733	)	$	322,208

1917

Intangible assets consisted of the following at December 31, ~~2020:~~2021:


	December 31, 2020									December 31, 2021
	Gross Carrying Value		Accumulated Amortization			Net Carrying Value		Weighted Average Useful Life (in years)		Gross Carrying Value		Accumulated Amortization			Net Carrying Value		Weighted Average Useful Life (in years)
	(Amounts in thousands)									(Amounts in thousands)
Finite-lived intangible assets:
Technology - developed	$	114,217	$	(14,444	)	$	99,773		17	$	146,097	$	(21,553	)	$	124,544		17
Patents		240		(240	)		—		8		240		(240	)		0		8
Customer relationships		217,790		(37,333	)		180,457		16		254,699		(50,719	)		203,980		15
Trademarks		5,893		(541	)		5,352		20		7,699		(877	)		6,822		19
Other intangibles		2,142		(1,324	)		818		3		2,839		(1,611	)		1,228		4
Total finite-lived intangible assets		340,282		(53,882	)		286,400		16		411,574		(75,000	)		336,574		16
Indefinite-lived intangible asset:
Trademarks		700		—			700		—		700		—			700		—
Total intangible assets	$	340,982	$	(53,882	)	$	287,100			$	412,274	$	(75,000	)	$	337,274

Amortization expense for finite-lived intangible assets was $~~5.7~~6.6 million and $~~4.0~~5.2 million for each of the three months ended ~~September~~June 30, ~~2021~~2022 and ~~2020,~~2021, respectively, and $~~16.1~~13.2 million and $~~11.8~~10.4 million for each of the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020,~~2021, respectively. As of ~~September~~June 30, ~~2021,~~2022, the Company expects to record the following amortization expense in future periods (amounts in thousands):


	Estimated		Estimated
	Amortization		Amortization
For the Nine Months Ended September 30,	Expense
2021 (remaining three months)	$	7,004
2022		25,840
For the Years Ended December 31,			Expense
2022 (remaining six months)			$	13,182
2023		25,722		26,246
2024		25,088		25,661
2025		24,821		25,322
2026 and thereafter		230,988
2026				25,322
2027 and thereafter				205,775
Total	$	339,463	$	321,508

Consolidated Balance Sheet Detail

Inventories, net

Inventories, net consists of the following:

September 30,

December 31,

2021

2020

(Amounts in thousands)

Raw materials

$
105,157

$
48,746

Work-in-process

7,860

8,084

Finished products

43,146

38,195

Total inventories, net

$
156,163

$
95,025


	June 30,		December 31,
	2022		2021
	(Amounts in thousands)
Raw materials	$	141,673	$	123,321
Work-in-process		7,126		8,119
Finished products		90,318		53,054
Total inventories, net	$	239,117	$	184,494

2018

Property, Plant and Equipment

Property, plant and equipment consist of the following:

September 30,

December 31,

2021

2020

(Amounts in thousands)

Land

$
1,023

$
1,023

Buildings

764

1,007

Leasehold improvements

51,778

31,331

Equipment

65,764

43,072

Furniture, fixtures and office equipment

8,355

8,714

Computer hardware and software

21,436

15,397

Construction in progress

14,723

14,927

Other

497

455

Total property, plant and equipment

164,340

115,926

Less - Accumulated depreciation

(64,688
)

(49,056
)
Total property, plant and equipment, net

$
99,652

$
66,870


	June 30,			December 31,
	2022			2021
	(Amounts in thousands)
Land	$	876		$	1,023
Buildings		679			764
Leasehold improvements		54,786			52,505
Equipment		75,132			70,983
Furniture, fixtures and office equipment		10,333			9,137
Computer hardware and software		27,655			22,380
Construction in progress		77,807			38,446
Other		504			443
Total property, plant and equipment		247,772			195,681
Less - Accumulated depreciation		(79,402	)		(70,717	)
Total property, plant and equipment, net	$	168,370		$	124,964

Depreciation expenses totaled $~~4.3~~5.5 million and $~~2.8~~3.8 million for each of the three months ended ~~September~~June 30, ~~2021~~2022 and ~~2020,~~2021, respectively, and $~~11.3~~10.7 million and $~~7.8~~7.0 million for each of the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020,~~2021, respectively.

Accrued Liabilities

Accrued liabilities consist of the following:

September 30,

December 31,

2021

2020

(Amounts in thousands)

Employee compensation

$
34,056

$
20,288

Income taxes payable

8,435

1,423

Royalty and license fees

1,497

466

Warranties

1,759

1,576

Professional fees

2,179

1,425

Deferred revenue

16,337

15,318

Other

(869
)

12,589

Total accrued liabilities

$
63,394

$
53,085


	June 30,		December 31,
	2022		2021
	(Amounts in thousands)
Employee compensation	$	28,232	$	42,147
Deferred revenue		22,161		14,848
Income taxes payable		4,937		4,984
Other		15,363		13,519
Total accrued liabilities	$	70,693	$	75,498

Convertible Senior Notes

0.375% Convertible Senior Notes due 2024

On July 19, 2019, the Company issued $287.5 million aggregate principal pursuant to the 2019 Notes, which includes the underwriters’ exercise in full of an option to purchase an additional $37.5 million aggregate principal amount of 2019 Notes (the “Notes Offering”). The net proceeds of the Notes Offering, after deducting underwriting discounts and commissions and other related offering expenses payable by the Company, were approximately $278.5 million. The 2019 Notes are senior, unsecured obligations of the Company, and bear interest at a rate of 0.375% per year. Interest is payable semi-annually in arrears on January 15 and July 15 of each year, beginning on January 15, 2020. The 2019 Notes will mature on July 15, 2024, unless earlier repurchased or converted in accordance with their terms.

During the ~~third~~second quarter of ~~2021,~~2022, the closing price of the Company’s common stock exceeded 130% of the conversion price of the 2019 Notes for more than 20 trading days of the last 30 consecutive trading days of the quarter. As a result, the 2019 Notes are convertible at the option of the holders of the 2019 Notes during the ~~fourth~~third quarter of ~~2021,~~2022, the quarter immediately following the quarter when the conditions are met, as stated in the terms of the 2019 Notes. These conditions have been met each quarter since the third quarter of 2020. As a result, $~~6,000~~24,000 aggregate principal amount of the 2019 Notes have been converted by the ~~noteholders~~note holders since ~~December 31, 2020.~~the issuance of the 2019 Notes, including $13,000 in the first half of 2022. The conversions resulted in the issuance of a nominal number of shares of the Company’s common stock to the note ~~holders, and the Company recorded a loss of approximately $1,000~~ ~~and approximately $6,000~~ ~~on the conversion of these notes, which is included in other expenses, net on our consolidated statements of~~

~~comprehensive income for the three and nine months ended September 30, 2021.~~holders. The Company continues to classify the carrying value of the 2019 Notes as current liabilities on the Company’s consolidated balance sheet at ~~September~~June 30, ~~2021.~~2022.

Prior to the adoption of ASU 2020-06, the Company accounted for the 2019 Notes as a liability and equity component where the carrying value of the liability component was valued based on a similar debt instrument. In accounting for the issuance of the

2019 Notes, the Company separated the 2019 Notes into liability and equity components. The carrying value of the liability component was calculated as the present value of its cash flows using a discount rate of 4.5% based on comparative convertible transactions for similar companies. The carrying value of the equity component representing the conversion option was determined by deducting the fair value of the liability component from the par value of the 2019 Notes as a whole. The excess of the principal amount of the liability component over its carrying value amount, referred to as the debt discount, was amortized to interest expense on our consolidated statements of comprehensive income over the five-year term of the 2019 Notes. The equity component was not re-measured as long as it continued to meet the conditions for equity classification. The equity component related to the 2019 Notes recorded at issuance was $52.1 million, which was recorded in additional paid-in capital on the Company's consolidated balance sheets.

In accounting for the transaction costs related to the issuance of the 2019 Notes, the Company allocated the total costs incurred to the liability and equity components of the 2019 Notes using the same proportions as the initial carrying value of the 2019 Notes. Transaction costs related to the liability component were $7.4 million and are amortized to interest expense using the effective interest method over the five-year term of the 2019 Notes. Transaction costs attributable to the equity component were $1.6 million and are netted with the equity component of the 2019 Notes in stockholders' equity of the Company's consolidated balance sheets. Additionally, the Company recorded a net deferred tax liability of $11.4 million.

Effective January 1, 2022, the Company adopted ASU 2020-06. After adoption, the Company now accounts for the 2019 Notes as a single liability measured at amortized cost. As the equity component is no longer required to be split into a separate component, the Company recorded a net adjustment for the initial $50.4 million that was allocated to additional paid-in capital and $22.9 million of life-to-date interest expense recorded as amortization of debt discount. Additionally, the net deferred tax liability recorded for the 2019 Notes was reversed. The principal amount of the liability over its carrying amount is amortized to interest expense over the five-year term of the 2019 Notes. Since the 2019 Notes are classified as a single liability, there is no debt discount required to be amortized for the three and six months ended June 30, 2022.

The net carrying value of the liability component of the 2019 Notes is as follows:



	September 30,			December 31,			June 30,			December 31,
	2021			2020			2022			2021
	(Amounts in thousands)						(Amounts in thousands)
0.375% Convertible Senior Notes due 2024:
Principal amount	$	287,493		$	287,500		$	287,476		$	287,489
Unamortized debt discount		(30,793	)		(38,317	)		0			(28,220	)
Unamortized debt issuance costs		(4,377	)		(5,446	)		(3,764	)		(4,011	)
Net carrying amount	$	252,323		$	243,737		$	283,712		$	255,258

The following table sets forth total interest expense recognized related to the 2019 Notes:

~~Interest expense recognized on the 2019 Notes for the three months ended September~~


	Three Months Ended						Six Months Ended
	June 30,						June 30,
	2022			2021			2022			2021
	(Amounts in thousands)
Contractual interest expense	$	269		$	269		$	539		$	539
Amortization of debt issuance costs		453			357			905			709
Amortization of debt discount		0			2,508			0			4,986
Total	$	722		$	3,134		$	1,444		$	6,234
Effective interest rate of the liability component		1.0	%		5.1	%		1.0	%		5.1	%

At June 30, ~~2021 was $0.3~~ ~~million, $2.5~~ ~~million and $0.4~~ million for the contractual coupon interest, the accretion of the debt discount and the amortization of the debt issuance costs, respectively. Interest expense recognized on the 2019 Notes for the nine months ended September 30, 2021 was $~~0.8~~ ~~million, $7.5~~ ~~million and $1.1~~ ~~million for the contractual coupon interest, the accretion of the debt discount and the amortization of the debt issuance costs, respectively. The effective interest rate on the 2019 Notes is~~ ~~5.1%, which included the interest on the 2019 Notes, amortization of the debt discount and debt issuance costs. At September 30, 2021~~2022 and December 31, ~~2020,~~2021, the carrying value of the 2019 Notes was $~~252.3~~283.7 million and $~~243.7~~255.3 million, respectively, net of unamortized discount, and the fair value of the 2019 Notes was $~~732.9~~432.3 million and $~~501.0~~678.5 million, respectively. The fair value of the 2019 Notes was determined based on the most recent trade activity of the 2019 Notes at ~~September~~June 30, 2022 and December 31, 2021.

Stockholders’ Equity

Stock Option and Incentive Plans

Under the Company’s current 2018 Stock Option and Incentive Plan (the “2018 Plan”), the number of shares of the Company’s common stock that are reserved and available for issuance is 2,778,000, plus the number of shares of common stock available for issuance under the Company’s previous equity plans. The shares of common stock underlying any awards under the 2018 Plan and previous equity plans (together, the “Plans”) that are forfeited, canceled or otherwise terminated (other than by exercise) shall be added back to the shares of stock available for issuance under the 2018 Plan. At ~~September~~June 30, ~~2021, 2,134,916~~2022, 1,948,381 shares were available for future grants under the 2018 Plan.

Stock-Based Compensation

For each of the three months ended ~~September~~June 30, ~~2021~~2022 and ~~2020,~~2021, the Company recorded stock-based compensation expense of $~~6.8~~7.0 million and $~~4.2~~7.1 million, respectively, for share-based awards granted under the Plans. For the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020,~~2021, the Company recorded stock-based compensation expense of $~~20.5~~14.9 million and $~~12.5~~13.7 million, respectively. The following table presents stock-based compensation expense in the Company’s consolidated statements of comprehensive income:


	Three Months Ended September 30,				Nine Months Ended September 30,				Three Months Ended June 30,				Six Months Ended June 30,
	2021		2020		2021		2020		2022		2021		2022		2021
	(Amounts in thousands)								(Amounts in thousands)
Cost of product revenue	$	489	$	563	$	1,444	$	1,421	$	615	$	449	$	1,237	$	955
Research and development		698		326		2,209		1,092		622		795		1,421		1,511
Selling, general and administrative		5,605		3,336		16,823		9,979		5,748		5,899		12,242		11,218
Total stock-based compensation	$	6,792	$	4,225	$	20,476	$	12,492	$	6,985	$	7,143	$	14,900	$	13,684

The 2018 Plan allows for the granting of incentive and nonqualified options to purchase shares of common stock, restricted stock and other equity awards. Employee grants under the Plans generally vest over a three to five-year period, with 20%-33% vesting on the first anniversary of the date of grant and the remainder vesting in equal yearly installments thereafter.

Nonqualified options issued to non-employee directors under the Plans generally vest over one year. In the first quarter of 2018, to create a longer-term retention incentive, the Company’s Compensation Committee granted long-term incentive compensation

awards to its Chief Executive Officer, ~~consisting~~which consisted of both stock options and restricted stock units (“RSUs”) that are subject to time-based vesting over nine years. Options granted under the Plans have a maximum term of ten years from the date of grant and generally, the exercise price of the stock options equals the fair market value of the Company’s common stock on the date of grant. At ~~September~~June 30, ~~2021,~~2022, options to purchase ~~658,600~~648,546 shares and ~~619,761~~551,029 stock units were outstanding under the Plans.

Stock Options

The Company uses the Black-Scholes option pricing model to calculate the fair value of stock option awards on the grant date, and the Company uses the value of the common stock as of the grant date to value RSUs. The Company measures stock-based compensation costs for stock options at the grant date based on the estimated fair value of the award. The Company recognizes expense on awards with service-based vesting over the employee’s requisite service period on a straight-line basis. Prior to 2020, the Company issued performance stock units to certain employees which are tied to the achievement of certain Company financial goal metrics and the passage of time. Since 2020, the Company has implemented formal programs that issue performance stock units to certain employees set to vest upon the achievement of individual goals and financial goals of the Company, as well as the passage of time. The Company recognizes expense on performance-based awards over the vesting period based on the probability that the performance metrics will be achieved. The Company recognizes stock-based compensation expense for options that are ultimately expected to vest, and accordingly, such compensation expense has been adjusted for estimated forfeitures.

Information regarding option activity for the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 under the Plans is summarized below:

Shares

Weighted
average
exercise
price

Weighted-Average Remaining Contractual Term
(in Years)

Aggregate Intrinsic Value
(in Thousands)

Options outstanding at December 31, 2020

696,711

$
43.88

6.90

$
102,958

Granted

38,824

$
202.88

Exercised

(70,935
)

$
28.00

Forfeited/expired/cancelled

(6,000
)

$
48.05

Options outstanding at September 30, 2021

658,600

$
54.93

6.55

$
154,152

Options exercisable at September 30, 2021

343,909

$
38.68

5.87

$
86,085

Vested and expected to vest at September 30, 2021(1)

637,504

6.53

$
149,348


	Shares			Weighted average exercise price		Weighted- Average Remaining Contractual Term (in Years)		Aggregate Intrinsic Value (in Thousands)
Options outstanding at December 31, 2021		625,107		$	54.15		6.29	$	131,707
Granted		47,838		$	180.82
Exercised		(16,399	)	$	28.20
Forfeited/expired/cancelled		(8,000	)	$	193.86
Options outstanding at June 30, 2022		648,546		$	62.42		6.09	$	67,377
Options exercisable at June 30, 2022		381,399		$	46.21		5.49	$	44,750
Vested and expected to vest at June 30, 2022(1)		632,147					6.08	$	65,687

(1)

Represents the number of vested options as of ~~September~~June 30, ~~2021~~2022 plus the number of unvested options expected to vest as of ~~September~~June 30, ~~2021~~2022 based on the unvested outstanding options at ~~September~~June 30, ~~2021~~2022 adjusted for estimated forfeiture rates of 8% for awards granted to non-executive level employees and 3% for awards granted to executive level employees.

The aggregate intrinsic value in the table above represents the total pre-tax intrinsic value (the difference between the closing price of the common stock on ~~September~~June 30, ~~2021,~~2022, the last business day of the ~~third~~second quarter of ~~2021,~~2022, of $~~288.99~~162.40 per share and the exercise price of each in-the-money option) that would have been received by the option holders had all option holders exercised their options on ~~September~~June 30, ~~2021.~~2022. The aggregate intrinsic value of stock options exercised during the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021 was $~~14.5~~2.4 million and $~~30.7~~6.0 million, respectively.

The weighted average grant date fair value of options granted during the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021 was $~~88.01~~76.64 and $~~48.13~~86.96, respectively. The total fair value of stock options that vested during the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021 was $~~2.6~~2.7 million ~~during each period.~~and $2.5 million, respectively.

23Stock Units

The fair value of stock units is calculated using the closing price of the Company’s common stock on the date of grant. The Company recognizes expense on awards with service-based vesting over the employee’s requisite service period on a straight-line basis. The Company recognizes expense on performance-based awards over the vesting period based on the probability that the performance metrics will be achieved.Information regarding stock unit activity, which includes activity for RSUs and performance stock units, for the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 under the Plans is summarized below:

Shares

Weighted-Average Remaining Contractual Term
(in Years)

Aggregate Intrinsic Value
(in Thousands)

Unvested at December 31, 2020

665,540

3.32

$
127,904

Awarded

164,968

Vested

(185,922
)

Forfeited/expired/cancelled

(24,825
)

Unvested at September 31, 2021

619,761

2.94

$
179,105

Unvested and expected to vest at September 30, 2021(1)

623,642

2.61

$
180,226


	Shares			Weighted- Average Remaining Contractual Term (in Years)		Aggregate Intrinsic Value (in Thousands)
Unvested at December 31, 2021		606,685			3.07	$	160,674
Awarded		144,845
Vested		(175,647	)
Forfeited/expired/cancelled		(24,854	)
Unvested at June 30, 2022		551,029			3.00	$	89,487
Vested and expected to vest at June 30, 2022(1)		535,061			2.63	$	86,894

(1)

Represents the number of vested stock units as of ~~September~~June 30, ~~2021~~2022 plus the number of unvested stock units expected to vest as of ~~September~~June 30, ~~2021~~2022 based on the unvested outstanding stock units at ~~September~~June 30, ~~2021~~2022 adjusted for estimated forfeiture rates of 8% for awards granted to non-executive level employees and 3% for awards granted to executive level employees.

The aggregate intrinsic value in the table above represents the total pre-tax intrinsic value (equal to the closing price of the common stock on ~~September~~June 30, ~~2021,~~2022, the last business day of the ~~third~~second quarter of ~~2021,~~2022, of $~~288.99~~162.40 per share, as stock units do not

have an exercise price) that would have been received by the stock unit holders had all holders exercised on ~~September~~June 30, ~~2021.~~2022. The aggregate intrinsic value of stock units vested during the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021 was $~~39.2~~37.5 million and $~~25.0~~35.8 million, respectively.

The weighted average grant date fair value of stock units ~~vested~~granted during the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021 was $~~58.10~~191.09 and $~~43.73~~206.15, respectively. The total fair value of stock units that vested during the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021 was $~~10.8~~17.9 million and $~~9.8~~9.6 million, respectively.

As of ~~September~~June 30, ~~2021,~~2022, there was $~~61.3~~70.4 million of total unrecognized compensation cost related to unvested share-based awards. This cost is expected to be recognized over a weighted average remaining requisite service period of ~~3.08~~3.01 years. The Company expects ~~1,950,908~~1,790,901 unvested options and stock units to vest over the next five years.

Commitments and Contingencies

In June 2018, the Company secured an agreement with Navigo Proteins GmbH (“Navigo”) for the exclusive co-development of multiple affinity ligands for which ~~Repligen~~the Company holds commercialization rights. The Company is manufacturing and supplying the first of these ligands, NGL-Impact®, exclusively to Purolite Life Sciences, an Ecolab Inc. company (“Purolite”), who is pairing the Company’s high-performance ligand with Purolite’s agarose jetting base bead technology used in their Jetted A50 Protein A resin product. The Company also signed a long-term supply agreement with Purolite for NGL-Impact and other potential additional affinity ligands that may advance from the Company’s Navigo collaboration. In September 2020, the Company and Navigo successfully completed co-development of an affinity ligand targeting the SARS-CoV-2 spike protein, to be utilized in the purification of COVID-19 vaccines. The Company has proceeded with scaling up and manufacturing this ligand and the development and validation of the related affinity chromatography resin, which is marketed by the Company. In September 2021, the Company and Navigo successfully completed co-development of a novel affinity ligand that addresses ~~aggravation~~aggregation issues associated with pH sensitive antibodies and Fc-fusion proteins. The Company is manufacturing and supplying this ligand, NGL-Impact® HipH, to Purolite for use in a platform use resin product. The Navigo and Purolite agreements are supportive of the Company’s strategy to secure and reinforce the Company’s proteins business. The Company made royalty payments to Navigo of $~~0.5~~0.7 million and $~~0.2~~0.3 million for the three months ended ~~September~~June 30, ~~2021~~2022 and ~~2020,~~2021, respectively and payments of $~~1.3~~1.1 million and $~~0.4~~0.6 million for the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020,~~2021, respectively.

10.

Accumulated Other Comprehensive ~~(Loss) Income~~Loss

The following shows the changes in the components of accumulated other comprehensive ~~(loss) income~~loss for the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 which consisted of only foreign currency translation adjustments for the periods shown (amounts in thousands):

Foreign

Currency

Translation

Adjustment

Balance as of December 31, 2020

$
2,085

Other comprehensive loss

(12,004
)
Balance at September 30, 2021

$
(9,919
)


	Foreign
	Currency
	Translation
	Adjustment

Balance at December 31, 2021	$	(16,886	)
Other comprehensive loss		(20,205	)
Balance at June 30, 2022	$	(37,091	)

11.

Income Taxes

For the three and ~~nine~~six months ended ~~September~~June 30, ~~2021,~~2022, we recorded an income tax provision of $~~7.7~~9.9 million and $~~19.5~~21.9 million, respectively. The Company’s effective tax rate for the three and ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 was ~~18.8~~16.6% and ~~16.4~~18.4%, respectively, compared to ~~18.0~~18.3% and ~~9.5~~15.2% for the corresponding periods in the prior year. The ~~increase~~difference in effective tax rates between the periods was primarily due to higher income before income taxes, lower windfall benefits recognized on stock option exercises and the vesting of stock units partially offset by lower U.S. taxation of foreign earnings. The effective tax rates for the three and ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021 were lower than the U.S. statutory rate of 21% primarily due to business tax credits and windfall benefits on stock option exercises and the vesting of stock units.

12.

Earnings Per Share

The Company reports earnings per share (“EPS”) in accordance with ASC 260, “Earnings Per Share,” which establishes standards for computing and presenting ~~earnings per share.~~EPS. Basic ~~earnings per share~~EPS is computed by dividing net income available to common shareholders by the weighted average number of common shares outstanding during the period. Diluted ~~earnings per share~~EPS is computed by dividing net income available to common shareholders by the weighted-average number of common shares and dilutive common share equivalents then outstanding. Potential common share equivalents consist of RSUs, performance stock units and the incremental common shares issuable upon the exercise of stock options. Under the treasury stock method, unexercised “in-the-money” stock options and warrants are assumed to be exercised at the beginning of the period or at issuance, if later. The assumed proceeds are then used to purchase common shares at the average market price during the period. In periods when the Company has a net loss, stock awards are excluded from the calculation of ~~earnings per share~~EPS as their inclusion would have an antidilutive effect.

A reconciliation of basic and diluted weighted average shares outstanding is as follows:


	Three Months Ended September 30,				Nine Months Ended September 30,				Three Months Ended June 30,				Six Months Ended June 30,
	2021		2020		2021		2020		2022		2021		2022		2021
	(Amounts in thousands, except per share data)								(Amounts in thousands, except per share data)
Numerator:
Net income									$	49,861	$	36,233	$	96,825	$	65,683
Effect of dilutive securities:
Charges associated with convertible debt instruments, net of tax										0		0		387		0
Numerator for diluted earnings per share - net income available to common stockholders after the effect of dilutive securities									$	49,861	$	36,233	$	97,212	$	65,683

Net income	$	33,498	$	14,552	$	99,181	$	40,228

Denominator:
Weighted average shares used in computing net income per share - basic		55,015		52,545		54,918		52,341		55,444		54,931		55,399		54,868
Effect of dilutive shares:
Options and stock units		919		916		913		951		598		843		661		903
Convertible senior notes		1,373		8		1,180		8
Convertible Senior Notes										676		1,012		1,779		1,052
Dilutive effect of unvested performance stock units		61		0		61		0		3		0		3		0
Dilutive potential common shares		2,353		924		2,154		959		1,277		1,855		2,443		1,956
Weighted average shares used in computing net income per share - diluted		57,368		53,469		57,072		53,300
Denominator for diluted earnings per share - adjusted weighted average shares used in computing net income per share - diluted										56,721		56,786		57,842		56,824

Earnings per share:
Basic	$	0.61	$	0.28	$	1.81	$	0.77	$	0.90	$	0.66	$	1.75	$	1.20
Diluted	$	0.58	$	0.27	$	1.74	$	0.75	$	0.88	$	0.64	$	1.68	$	1.16

At ~~September~~June 30, ~~2021,~~2022, there were outstanding options to purchase ~~658,600~~648,546 shares of the Company’s common stock at a weighted average exercise price of $~~54.93~~62.42 per share and ~~619,761~~551,029 shares of common stock issuable upon the vesting of stock units, which include RSUs and performance stock units. For the three and ~~nine~~six months ended ~~September~~June 30, ~~2021,~~2022, ~~44,912~~325,685 shares and ~~63,770~~306,400 shares, respectively, of the Company’s common stock were excluded from the calculation of diluted ~~earnings per share~~EPS because the exercise prices of the stock options were greater than or equal to the average price of the common shares and were therefore anti-dilutive.

At ~~September~~June 30, ~~2020,~~2021, there were outstanding options to purchase ~~723,914~~682,913 shares of the Company’s common stock at a weighted average exercise price of $$5~~41.03~~1.71 per share and ~~675,567~~618,618 shares of common stock issuable upon the vesting of stock units, which include RSUs and performance stock units. For the three and ~~nine~~six months ended ~~September~~June 30, ~~2020,~~2021, ~~60,202~~ ~~and~~ ~~117,160~~69,388 shares of the Company’s common stock were excluded from the calculation of diluted ~~earnings per share~~EPS because the exercise prices of the stock options were greater than or equal to the average price of the common shares and were therefore anti-dilutive.

In July 2019, the Company issued $287.5 million aggregate principal amount of the 2019 Notes. As provided by the terms of the indenture underlying the 2019 Notes, prior to March 4, 2022, conversion of the 2019 Notes ~~will be~~could have been settled in cash, shares of the Company’s common stock or a combination thereof, at the Company’s election. ~~As of September 30, 2021,~~On March 4, 2022, we entered into the Second Supplemental Indenture for the 2019 Notes, ~~were convertible. The~~which irrevocably elected to settle the conversion of the 2019 Notes using a

combination of cash and shares of the Company’s common stock, settling the par value of the 2019 Notes in cash and any excess conversion premium in shares.

As provided by the terms of the Second Supplemental Indenture underlying the 2019 Notes, the Company ~~currently intends~~irrevocably elected to settle the conversion obligation for the 2019 Notes in a combination of cash and shares of the Company's common stock. This means the Company will settle the par value of the 2019 Notes in cash and any excess conversion premium in shares.

As ~~provided by~~ mentioned in Note 7, "Convertible Senior Notes," the ~~terms~~Company adopted ASU 2020-06 effective January 1, 2022. Under ASU 2020-06, the Company is required to reflect the dilutive effect of the ~~indenture underlying~~convertible securities by application of the "if-converted" method, which means the denominator of the EPS calculation would include the total number of shares assuming the 2019 Notes had been fully converted at the beginning of the period. Prior to March 4, 2022, the Company ~~has~~had the choice to settle the conversion of the 2019 Notes in cash, stock or a ~~choice~~combination of the two. Therefore, from January 1, 2022 (the date the Company adopted ASU 2020-06) to March 4, 2022, the Company included 3,474,429 shares in the denominator of the EPS calculation, applying the if converted method. Subsequent to March 4, 2022, after the Second Supplemental Indenture became effective, the Company irrevocably elected to settle the conversion obligation for the 2019 Notes in ~~cash, shares or any~~a combination of ~~the two. The Company currently intends to settle the par value~~cash and shares of the ~~2019 Notes in cash~~Company's common stock, and ~~any~~from March 5, 2022 forward, only the excess ~~conversion~~ premium inwill be settled with shares. ~~The~~Under the if-converted method of calculating dilutive shares, the Company ~~applies~~was also required to exclude amortization of debt issuance costs and interest charges applicable to the convertible debt from the numerator of the dilutive EPS calculation for the period from January 1, 2022 to March 4, 2022, as if the interest on convertible debt was never recognized for that period. For the six months ended June 30, 2022, the Company excluded interest charges of $0.4 million (net of tax) from the numerator.

Prior to the adoption of ASU 2020-06, the Company applied the provisions of ASC 260, “Earnings Per ~~Share”,~~Share,” Subsection 10-45-44, to determine the diluted weighted average shares outstanding as it ~~relates~~related to the conversion spread on its convertible notes. Accordingly, the par value of the 2019 Notes iswas not included in the calculation of diluted income per share, but the dilutive effect of the conversion premium iswas considered in the calculation of diluted net income per share using the treasury stock method. The dilutive impact of the 2019 Notes iswas based on the difference between the Company’s current period average stock price and the conversion price of the 2019 Notes, provided there iswas a premium. Pursuant to this accounting standard, there iswas no dilution from the accreted principal of the 2019 Notes. For the three and ~~nine~~six months ended ~~September~~June 30, 2022, the dilutive effect of the conversion premium included in the calculation of diluted earnings was 676,166 shares and 1,779,041 shares, respectively. For the three and six months ended June 30, 2021, the dilutive effect of the conversion premium included in the calculation of diluted earnings was ~~1,373,341~~1,011,993 shares and ~~1,180,425~~1,052,337 shares, respectively. ~~There was~~ 0 ~~dilutive effect of the conversion premium included in the calculation of diluted earnings per share for the three and nine months ended September 30, 2020.~~

~~On September 20, 2021, as a result of the Avitide Acquisition, the Company assumed a contingent consideration obligation for earnout payments in an aggregate amount of $80.0~~ million which will be paid equally in cash and the Company’s common stock, contingent upon the achievement of certain performance thresholds and targets each year over a three year period as discussed in Note 2, ~~“Fair Value Measurements,”~~ ~~to these consolidated financial statements. As of September 30, 2021, none of the contingent triggers have occurred.~~

13.

Related Party Transactions

Certain facilities leased by Spectrum are owned by the Roy T. Eddleman ~~the former owner of Spectrum.~~Living Trust (the "Trust"). As of ~~September~~June 30, ~~2021, Mr. Eddleman~~2022, the Trust owned greater than 5% of the Company’s outstanding ~~shares and~~shares. Therefore, the Company considers ~~him~~the Trust to be a related party. The lease amounts paid to ~~this shareholder~~the Trust prior to the public offering were negotiated in connection with the acquisition of Spectrum. The Company incurred rent expense totaling $0.2 million ~~and $0.1~~ ~~million~~ for each of the three months ended ~~September~~June 30, ~~2021~~2022 and ~~2020, respectively,~~2021 related to these leases and incurred rent expense of $~~0.5~~0.4 million for each of the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020, respectively.~~2021.

14.

Segment Reporting

The Company views its operations, makes decisions regarding how to allocate resources and manages its business as 1 reportable segment and one reporting unit. As a result, the financial information disclosed herein represents all of the material financial information related to the Company.

The following table represents the Company’s total revenue by geographic area (based on the location of the customer):

Three Months Ended

Nine Months Ended

September 30,

September 30,

2021

2020

2021

2020

Revenue by customers' geographic locations:

North America

44
%

50
%

42
%

48
%
Europe

42
%

36
%

40
%

38
%
APAC/Other

14
%

14
%

18
%

14
%
Total revenue

100
%

100
%

100
%

100
%


	Three Months Ended						Six Months Ended
	June 30,						June 30,
	2022			2021			2022			2021
Revenue by customers' geographic locations:
North America		45	%		41	%		43	%		42	%
Europe		35	%		40	%		39	%		39	%
APAC/Other		20	%		19	%		18	%		19	%
Total revenue		100	%		100	%		100	%		100	%

Concentrations of Credit Risk and Significant Customers

Financial instruments that subject the Company to significant concentrations of credit risk primarily consist of cash and cash equivalents, marketable securities and accounts receivable. Per the Company’s investment policy, cash equivalents and marketable securities are invested in financial instruments with high credit ratings and credit exposure to any one issue, issuer (with the exception of U.S. Treasury obligations) and type of instrument is limited. At ~~September~~June 30, ~~2021~~2022 and December 31, ~~2020,~~2021, the Company had no investments associated with foreign exchange contracts, options contracts or other foreign hedging arrangements.

Concentration of credit risk with respect to accounts receivable is limited to customers to whom the Company makes significant sales. While a reserve for the potential write-off of accounts receivable is maintained, the Company has not written off any significant accounts to date. To control credit risk, the Company performs regular credit evaluations of its customers’ financial condition.

~~Revenue from customers that represented~~ 10~~% or more of the Company’s total revenue for the three months ended September 30, 2021 and 2020 came from sales to Pfizer Inc. during the three months ended September 30, 2021, which generated $19.1~~ ~~million, or~~ 11~~% of the Company's total revenue for the period. Revenue from customers that represented~~ 10~~% or more of the Company's total revenue for the nine months ended September 30, 2021 and 2020 came from sales to MilliporeSigma during the nine months ended September 30, 2020, which generated $29.4~~ ~~million in revenue, or~~ 11~~% of the Company's total revenue for the period.~~ There was 0 revenue from customers that represented 10% or more of the Company's total revenue for the ~~other periods presented.~~three and six months ended June 30, 2022 and 2021.

27No accounts receivable balance from a specific customer represented

10% or more of the Company's total trade accounts receivable at June 30, 2022. Significant accounts receivable balances representing ~~10%~~10% or more of the Company’s total trade accounts receivable and royalties at December 31, 2021 came from our accounts receivable balance outstanding with Pfizer Inc., which was 14% of our total accounts receivable and other receivable ~~balances at September 30, 2021 and December 31, 2020 are as follows:~~balance.

September 30,

December 31,

2021

2020

Pfizer Inc.

10
%

N/A

Cytiva

N/A

11
%

ITEM 2. MANAGEMENT’S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS

Overview

Repligen and its subsidiaries, collectively doing business as Repligen Corporation (“Repligen”, “we”, “our”, or the “Company”) is a global life sciences company that develops and commercializes highly innovative bioprocessing technologies and systems that increase efficiencies and flexibility in the process of manufacturing biological drugs.

As the overall market for biologics continues to grow and expand, our customers – primarily large biopharmaceutical companies and contract development and manufacturing organizations – face critical production cost, capacity, quality and time pressures. Built to address these concerns, our products are helping to set new standards for the way biologics are manufactured. We are committed to inspiring advances in bioprocessing as a trusted partner in the production of critical biologic drugs – including monoclonal antibodies (“mAb”), recombinant proteins, vaccines and cell and gene therapies ("C&GT") – that are improving human health worldwide. For more information regarding our business, products and acquisitions, see Part I, Item 1, “Business” included in our ~~2020~~2021 Annual Report on Form 10-K (“Form 10-K”), which was filed with the Securities and Exchange Commission (“SEC”) on February ~~24, 2021.~~17, 2022.

We currently operate as one bioprocessing business, with a comprehensive suite of products to serve both upstream and downstream processes in biological drug manufacturing. Building on over 3540 years of industry expertise, we have developed a broad and diversified product portfolio that reflects our passion for innovation and the customer-first culture that drives our entire organization. We continue to capitalize on opportunities to maximize the value of our product platform through both organic growth initiatives (internal innovation and commercial leverage) and targeted acquisitions.

2021 Acquisitions

Bio-Flex Solutions LLC and Newton T&M Corp.

On November 29, 2021, the Company entered into an Equity Purchase Agreement with Bio-Flex Solutions, L.L.C. ("BioFlex"), Newton T&M Corp. ("NTM") and each of Ralph Meola and Jason Nisler, to acquire 100% of the outstanding securities of BioFlex and NTM (collectively, the “NTM Acquisition”). The transaction closed on December 16, 2021.

NTM, which is headquartered in Newton, New Jersey, is the parent company of BioFlex and focuses on manufacturing of products, while BioFlex, also headquartered in Newton, New Jersey, commercializes branded products to biotech customers. The NTM Acquisition complements and expands our filtration offering paths as the industry migrates to single-use flow paths solutions for mAb, vaccine and C&GT applications, with a focus on single-use fluid management components, including single-use clamps, adapters, end caps and hose assemblies. The NTM Acquisition streamlines and increases control over many components in our single-use supply chain which ultimately should drive reduced lead-times for our customers in the coming years.

Acquisition of Avitide, Inc.

On September 16, 2021, we entered into an Agreement and Plan of Merger and Reorganization (“Avitide Merger Agreement”) with Avalon Merger Sub, Inc., a Delaware corporation and ~~our~~a wholly owned direct subsidiary ~~(“First Merger Sub”),~~of the Company, Avalon Merger Sub LLC, a Delaware limited liability company and ~~our~~a wholly owned direct subsidiary, ~~(“Second Merger Sub” and together with First Merger Sub, the “Merger Subs”), Avitide, Inc., a Delaware corporation (“Avitide”),~~ and Shareholder Representative Services LLC, a Colorado limited liability company, solely in its capacity as the representative, agent and attorney-in-fact of Avitide's securityholders ~~(the “Securityholder Representative”)~~ to purchase Avitide. The transaction closed on September 20, 2021 ~~(the “Avitide Acquisition”) and~~ on the terms set forth in the Avitide Merger Agreement.

Avitide, which is headquartered in Lebanon, New Hampshire, offers diverse libraries and leading technology in affinity ligand discovery and development, resulting in best-in-class ligand discovery and development lead-times. The acquisition gives ~~Repligen~~us a new platform for affinity resin development, including ~~gene therapy,~~C&GT, and advances and expands our proteins franchise to address the unique purification needs of gene therapies and other emerging modalities.

Acquisition of Polymem S.A.

On June 22, 2021, we entered into a Stock Purchase Agreement with Polymem S.A. (“Polymem”), a company organized under the laws of France, and Jean-Michel Espenan and Franc Saux, acting together jointly and severally as the representatives of the sellers, which subsequently closed on July 1, ~~2021 (the “Polymem Acquisition.”).~~2021.

Polymem, which is headquartered in Toulouse, France, is a manufacturer of hollow fiber membranes, membrane modules and systems for industrial and bioprocessing applications. Polymem products will complement and expand Repligen’s portfolio of hollow fiber systems and consumables. The acquisition substantially increases our membrane and module manufacturing capacity and establishes a world-class center of excellence in Europe to address the accelerating global demand for these innovative products.

~~2020 Acquisitions~~

~~ARTeSYN Biosolutions Holdings Ireland Limited~~

On October 27, 2020, we entered into an Equity and Asset Purchase Agreement with ARTeSYN Biosolutions Holdings Ireland Limited (“ARTeSYN”), a company organized under the laws of Ireland, Third Creek Holdings, LLC, a Nevada limited liability company (“Third Creek”), Alphinity, LLC, a Nevada limited liability company (“Alphinity”, and together with Third Creek the “ARTeSYN Sellers”), and Michael Gagne, solely in his capacity as the representative of the ARTeSYN Sellers, pursuant to which the Company acquired (i) all of the outstanding equity securities of ARTeSYN and (ii) certain assets from Alphinity related to the business of ARTeSYN (collectively, the “ARTeSYN Acquisition”).

ARTeSYN is headquartered in Waterford, Ireland and conducts its operations in Ireland, the United States and Estonia. Its suite of single-use solutions has been created with the goal of enabling “abundance in medicine” by allowing greater efficiency in biologics manufacturing. The ARTeSYN team has created a number of solutions targeting the single-use space from single-use valves with fully disposable valve liners, XO® skeletal supports, a hybrid small parts offering for de-bottlenecking traditional facilities, and fully automated SU process systems that have quickly become leading solutions in the bioprocessing industry. ARTeSYN has established downstream processing leadership with a suite of state of the art single-use systems for chromatography, filtration, continuous manufacturing and media/buffer prep workflows. In addition, we have integrated unique flow path assemblies utilizing our silicone extrusion and molding technology, to deliver highly differentiated, low hold-up volume systems that minimize product loss during processing. The ARTeSYN portfolio expands on the market success of the hollow fiber systems and complements our chromatography and TFF filtration product lines.

~~Non-Metallic Solutions, Inc.~~

On October 15, 2020, we executed a Stock Purchase Agreement with Non-Metallic Solutions, Inc. (“NMS”), a Massachusetts corporation, and each of William Malloneé and Derek Masser, the legal and beneficial owners of NMS, to purchase NMS, which transaction subsequently closed on October 20, 2020 (the “NMS Acquisition”).

NMS, headquartered in Auburn, Massachusetts, is a manufacturer of fabricated plastics, custom containers, and related assemblies and components used in the manufacturing of biologic drugs. The acquisition of NMS strengthens the Company’s portfolio of single-use integrated systems and flow path assemblies, streamlines our supply chain for current products, and provides greater flexibility to scale and expand single-use and systems portfolios.

Critical Accounting Policies and Estimates

A “critical accounting policy” is one which is both important to the portrayal of our financial condition and results and requires management’s most difficult, subjective or complex judgments, often as a result of the need to make estimates about the effect of matters that are inherently uncertain. For a description of our critical accounting policies that affect our more significant judgments and estimates used in the preparation of our consolidated financial statements, refer to Management’s Discussion and Analysis of Financial Condition and Results of Operations and our significant accounting policies in Note 2 to the consolidated financial statements included in our Form 10-K.

Results of Operations

The following discussion of the financial condition and results of operations should be read in conjunction with the accompanying consolidated financial statements and the related footnotes thereto.

Revenues

Total revenue for the three and ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021 were as follows:


	Three Months Ended June 30,				Increase/(Decrease)						Six Months Ended June 30,				Increase/(Decrease)
	2022		2021		$ Change			% Change			2022		2021		$ Change			% Change
	(Amounts in thousands, except for percentage data)
Revenue:
Products	$	207,597	$	162,920	$	44,677			27.4	%	$	413,960	$	305,657	$	108,303			35.4	%
Royalty and other		36		40		(4	)		(10.0	%)		73		140		(67	)		(47.9	%)
Total revenue	$	207,633	$	162,960	$	44,673			27.4	%	$	414,033	$	305,797	$	108,236			35.4	%

Three Months Ended
September 30,

Increase/(Decrease)

Nine Months Ended
September 30,

Increase/(Decrease)

2021

2020

$ Change

% Change

2021

2020

$ Change

% Change

(Amounts in thousands, except for percentage data)

Revenue:

Products

$
178,177

$
94,029

$
84,148

89.5
%

$
483,834

$
257,521

$
226,313

87.9
%
Royalty and other

39

31

8

25.8
%

179

91

88

96.7
%
Total revenue

$
178,216

$
94,060

$
84,156

89.5
%

$
484,013

$
257,612

$
226,401

87.9
%

Product revenues

~~Direct~~Since 2016, we have been increasingly focused on selling our products directly to customers in the pharmaceutical industry and to our contract manufacturers. These direct sales represented approximately ~~82%~~89% and 83% of our product revenue for each of the three months ended ~~September~~June 30, ~~2021~~2022 and ~~2020,~~2021, respectively, and represented ~~82%~~88% and ~~77%~~82% of our product revenue for each of the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020,~~2021, respectively. We expect that direct sales will continue to account for an increasing percentage of our product revenues, as the largest customer of our OEM products diversified its supply chain in 2020. Sales of our bioprocessing products can be impacted by the timing of large-scale production orders and the regulatory approvals for such antibodies, which may result in significant quarterly fluctuations.

Revenues from our filtration franchise include the sales of our XCell ATF® systems and ~~consumables,~~consumables; Spectrum filtration systems, including KrosFlo ~~TFF~~®; SIUS® filtration products and ~~TFDF systems, Polymem~~systems; the fluid management assemblies and components offered by Engineered Molding Technology LLC, Non-Metallic Solutions, Inc., ARTeSYN Biosolutions Holdings Ireland Limited ("ARTeSYN") and BioFlex, the latter of which was acquired on December 16, 2021; the hollow fiber ~~membranes~~membrane technology offered by Polymem, which we acquired on July 1, 2021; and ~~modules, TangenX~~our ARTeSYN filtration systems. Revenue from our chromatography products includes the sale of our OPUS pre-packed chromatography columns, ELISA test kits and chromatography systems from Spectrum and ARTeSYN. Revenue from proteins products includes the sale of our Protein A ligands and cell culture growth factors, and sales of affinity products, including adeno-associated virus resins offered by Avitide,®

~~flat sheet cassettes, ARTeSYN~~28

~~systems, ProConnex~~® ~~flow paths and silicone-molded and plastic consumables, including those manufactured by EMT and NMS. Revenues~~which we acquired on September 20, 2021. Revenue from our process analytics ~~franchise~~products includes the sale of our SoloVPE®, FlowVPE® and FlowVPX® systems, ~~and associated~~ consumables and service. ~~Revenues from our chromatography franchise include the sales of our OPUS~~® ~~pre-packed columns, resins, ELISA test kits and ARTeSYN~~® ~~systems. Revenues from our proteins franchise include the sale of our Protein A ligands and cell culture growth factors.~~ Other revenue primarily consists of sales of our operating room products to hospitals as well as freight revenue.

During the three and ~~nine~~six months ended ~~September~~June 30, ~~2021,~~2022, product revenue increased by ~~$84.1~~$44.7 million, or ~~89.5%~~27.4% and ~~$226.3~~$108.3 million, or ~~87.9%~~35.4%, respectively, as compared to the same periods of ~~2020,~~2021, with exceptionally robust demand for our filtration, chromatography and ~~proteins~~process analytics products. There is continued adoption of our products by key bioprocessing customers across all key product lines. Since the second quarter of 2020, we ~~have experienced~~began to experience accelerated demand across all of our franchises due to the critical needs of customers working on the novel coronavirus pandemic (“COVID-19”) ~~vaccines~~vaccines. However, decreasing demand for vaccination is driving a reduction in future demand of our products from these customers and ~~therapeutics.~~the recognition of future revenue related to COVID-19. In addition, we ~~saw~~have recently seen an increased demand for C&GT and mAb manufacturing. We also experienced an increase in ~~demand for gene therapy and monoclonal antibody manufacturing. The Polymem Acquisition and the Avitide Acquisition during the third quarter of 2021 resulted in an increase in product~~ revenue during the three and ~~nine~~six months ended ~~September~~June 30, 2022, compared to the same periods of 2021, due to our 2021 acquisitions which were acquired in the second half of 2021 and for which there ~~were~~was no comparable amounts in ~~2020.~~the three and six months ended June 30, 2021.

Royalty revenues

Royalty revenues in the three and ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021 relate to royalties received from a third-party systems manufacturer associated with our OPUS PD chromatography columns. Royalty revenues are variable and are dependent on sales generated by our partner.

Costs of product revenue and operating expenses

Total costs and operating expenses for the three and ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021 were comprised of the following:


	Three Months Ended June 30,					Increase/(Decrease)						Six Months Ended June 30,					Increase/(Decrease)
	2022			2021		$ Change			% Change			2022			2021		$ Change			% Change
	(Amounts in thousands, except for percentage data)
Cost of product revenue	$	86,260		$	61,990	$	24,270			39.2	%	$	168,616		$	121,737	$	46,879			38.5	%
Research and development		10,440			8,389		2,051			24.4	%		22,595			16,001		6,594			41.2	%
Selling, general and administrative		54,649			44,341		10,308			23.2	%		108,949			83,436		25,513			30.6	%
Contingent Consideration		(6,884	)		—		(6,884	)		(100.0	%)		(9,295	)		—		(9,295	)		(100.0	%)
Total costs and operating expenses	$	144,465		$	114,720	$	29,745			25.9	%	$	290,865		$	221,174	$	69,691			31.5	%

Three Months Ended
September 30,
Increase/(Decrease)

Nine Months Ended
September 30,
Increase/(Decrease)

2021

2020

$ Change

% Change

2021

2020

$ Change

% Change

(Amounts in thousands, except for percentage data)

Cost of product revenue

$
75,495

$
39,626

$
35,869

90.5
%

$
197,232

$
108,471

$
88,761

81.8
%
Research and development

9,154

4,422

4,732

107.0
%

25,155

13,460

11,695

86.9
%
Selling, general and
administrative

48,373

29,051

19,322

66.5
%

131,809

83,277

48,532

58.3
%
Total costs and operating
expenses

$
133,022

$
73,099

$
59,923

82.0
%

$
354,196

$
205,208

$
148,988

72.6
%

��

Cost of product revenue

Cost of product revenue increased ~~90.5%~~39.2% and ~~81.8%~~38.5% in the three and ~~nine~~six months ended ~~September~~June 30, ~~2021,~~2022, respectively, compared to the same periods of ~~2020,~~2021, due primarily to the increase in product revenue mentioned above and costs associated with higher product volume. In addition, ~~there was~~in order to support our growth and demand for our products, we continue to invest in our manufacturing infrastructure through an increase in headcount related to manufacturing ~~headcount for~~and occupancy costs. In addition, freight charges and import duties increased during the three and ~~nine~~six months ended ~~September~~June 30, 2022, compared to the same periods of 2021, due to increased fuel costs and carrier market conditions. Our depreciation expense increased during the three and six months ended June 30, 2022, as compared to the same periods of ~~2020, which resulted in higher employee-related costs. Our two acquisitions in~~ 2021, ~~have also contributed to~~as manufacturing equipment was placed into service during the ~~increase in~~second half of 2021. In addition, cost of product revenue increased for the three and ~~nine~~six months ended ~~September~~June 30, 2022 due to the addition of Polymem, Avitide and BioFlex during the second half of 2021 ~~since~~for which there were no comparable costs during ~~2020.~~the three and six months ended June 30, 2021.

Gross margin was ~~57.6%~~58.5% and ~~59.3%~~62.0% in the three ~~and nine~~ months ended ~~September~~June 30, ~~2021.~~2022 and 2021, respectively. The reduction in gross margin in the three months ended June 30, 2022, as compared to the same period of 2021, is due primarily to the increase in manufacturing and employee-related costs from a rise in manufacturing headcount, an increase in occupancy costs due to added capacity, an increase in depreciation expense, an increase in freight charges and import duties mentioned above.

Gross margin was 59.3% and 60.2% in the six months ended June 30, 2022 and 2021, respectively. The reduction in gross margin in the six months ended June 30, 2022, as compared to the same period of 2021, is due primarily to the increase in employee-related costs from a rise in manufacturing headcount, an increase in occupancy costs due to added capacity in 2021 and an increase in depreciation expense mentioned above. The gross margin for the ~~three and nine~~six months ended ~~September~~June 30, 2021 also includes ~~$0.3~~$1.6 million ~~and $1.9 million, respectively,~~ of amortization of inventory step-up associated with the ~~Polymem~~ARTeSYN Acquisition and ARTeSYN Acquisition. The gross margin for the three and nine months ended September 30, 2020 was 57.9%. Excluding the step-up amortization, gross margin for the three and nine months ended September 30, 2021 was 57.8% and 59.6%, respectively. The increase in gross margin, excluding the inventory step-up amortization, in the nine months ended September 30, 2021, as compared to the same period of 2020, is due primarily to the increase in revenue mentioned above, and favorable product mix, partially offset by an increase in manufacturing headcount subsequent to September 30,December 2020. Gross margins may fluctuate in future quarters based on ~~expected~~actual production volume and product mix.

Research and development expenses

Research and development (“R&D”) expenses are related to bioprocessing products, which include personnel, supplies and other research expenses. Due to the size of the Company and the fact that these various programs share personnel and fixed costs, we do not track all of our expenses or allocate any fixed costs by program, and therefore, have not provided historical costs incurred by project.

R&D expenses increased ~~107.0%~~$2.1 million, or 24.4% and $6.6 million, or 41.2%, during the three and six months ended ~~September~~June 30, ~~2021,~~2022, respectively, compared to the same ~~period~~periods of ~~2020.~~2021. The increase during the ~~period~~periods is primarily due to increased spending on new product development and ~~the addition of R&D expenses incurred by Avitide, Polymem and ARTeSYN during the period,~~investments in newly acquired businesses, for which there were no comparable costs in ~~2020,~~the three and ~~due to the increase in employee related costs as the number of R&D employees has increased since September 30, 2020.~~

~~R&D expenses increased 86.9% during the nine~~six months ended ~~September~~June 30, ~~2021, compared to the same period of 2020.~~2021. The increase during the ~~period~~periods is also due in part to ~~the addition of~~ increased development project-related expenses and employee-related costs.

R&D expense also includes payments made to expand our proteins product offering through our development agreement with Navigo Proteins GmbH (“Navigo”). Such expenses ~~related to operations of Avitide, Polymem~~were $0.7 million and ~~ARTeSYN,~~$1.1 million, respectively, for the three and ~~increased costs associated with a rise in R&D headcount and the ramp up of project spending for new product development during the nine~~six months ended ~~September~~June 30, ~~2021.~~2022, as compared to $0.3 million and $0.6 million, respectively for the same periods in 2021, in the form of milestone payments to Navigo.

We expect our R&D expenses for the remainder of ~~2021~~2022 to gradually increase each quarter to support new product development.

Selling, general and administrative expenses

Selling, general and administrative (“SG&A”) expenses include the costs associated with selling our commercial products and costs required to support our marketing efforts, including legal, accounting, patent, shareholder services, amortization of intangible assets and other administrative functions.

During the three and ~~nine~~six months ended ~~September~~June 30, ~~2021,~~2022, SG&A costs increased by ~~$19.3~~$10.3 million, or ~~66.5%~~23.2%, and ~~$48.5~~$25.5 million, or ~~58.3%~~30.6%, respectively, as compared to the same periods of ~~2020.~~2021. The ~~increase is~~increases are partially due to the continued expansion of our customer-facing activities to drive sales of our bioprocessing products, and the continued buildout of our administrative infrastructure, primarily through increased headcount, to support expected future growth. ~~Employee-related costs during the three and nine months ended September 30, 2021, as compared to the same periods in 2020, resulted from the increase in headcount period over period.~~ In addition, SG&A costs increased for the three and ~~nine~~six months ended ~~September~~June 30, ~~2021, respectively~~2022 due to the addition of ~~NMS~~Polymem, Avitide and ~~ARTeSYN~~BioFlex during the ~~fourth quarter of 2020 and the addition of Polymem and Avitide during the third quarter~~second half of 2021, for which there ~~were~~are no comparable costs in the three and six months ended June 30, 2021.

Contingent consideration expense

Contingent consideration expense represents the change in fair value of the contingent consideration obligation included in current and noncurrent contingent consideration on the consolidated balance sheets as of the end of each period. Re-measurement of the contingent consideration obligation is done each quarter and the carrying value of the obligation is adjusted to the current fair value through our consolidated statements of comprehensive income. We recorded an adjustment to the fair value of the contingent consideration obligation for the ~~same periods~~three and six months ended June 30, 2022 of ~~2020.~~($6.9) million and ($9.3) million, respectively.

3130

Other expenses, net

The table below provides detail regarding our other expenses, net:


	Three Months Ended September 30,						Increase/(Decrease)						Nine Months Ended September 30,						Increase/(Decrease)						Three Months Ended June 30,						Increase/(Decrease)						Six Months Ended June 30,						Increase/(Decrease)
	2021			2020			$ Change			% Change			2021			2020			$ Change			% Change			2022			2021			$ Change			% Change			2022			2021			$ Change			% Change
	(Amounts in thousands, except for percentage data)																								(Amounts in thousands, except for percentage data)
Investment income	$	44		$	82		$	(38	)		(46.3	%)	$	137		$	1,699		$	(1,562	)		(91.9	%)	$	708		$	41		$	667			1626.8	%	$	785		$	93		$	692			744.1	%
Interest expense		(3,220	)		(3,052	)		(168	)		5.5	%		(9,470	)		(9,032	)		(438	)		4.8	%		(271	)		(2,787	)		2,516			(90.3	%)		(563	)		(5,541	)		4,978			(89.8	%)
Amortization of debt issuance costs																										(453	)		(357	)		(96	)		26.9	%		(905	)		(709	)		(196	)		27.6	%
Other expenses		(786	)		(248	)		(538	)		216.9	%		(1,789	)		(632	)		(1,157	)		183.1	%		(3,396	)		(779	)		(2,617	)		335.9	%		(3,798	)		(1,003	)		(2,795	)		278.7	%
Total other expense, net	$	(3,962	)	$	(3,218	)	$	(744	)		23.1	%	$	(11,122	)	$	(7,965	)	$	(3,157	)		39.6	%	$	(3,412	)	$	(3,882	)	$	470			(12.1	%)	$	(4,481	)	$	(7,160	)	$	2,679			(37.4	%)

Investment income

Investment income includes income earned on invested cash balances. ~~The decrease of $38 thousand and $1.6~~Our investment income increased by $0.7 million infor the three and ~~nine~~six months ended ~~September~~June 30, ~~2021, as~~2022, compared to the same periods of ~~2020, respectively, was attributable~~2021 due to ~~a decrease~~an increase in interest rates on ~~our~~average invested cash balances. In March 2020, in response to the outbreak of COVID-19 and to stay ahead of disruptions and economic slowdown, the Federal Reserve reduced federal funds rates to a range of 0.0% to 0.25%, which will continue to affect our investment income in future periods.balances since June 30, 2021. We expect investment income to vary based on changes in the amount of funds invested and fluctuation of interest rates.

Interest expense

Interest expense in the three and ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021 is primarily from our 0.375% Convertible Senior Notes due 2024 (the “2019 Notes”), which were issued in July 2019. Interest expense ~~which~~for the three and six months ended June 30, 2022 includes the contractual coupon interest on the 2019 Notes. For the three and six months ended June 30, 2021, interest expense includes the amortization of the debt discount as well as the contractual coupon interest. As a result of our adoption of ASU 2020-06, "Debt - Debt with Conversion Other Options (Subtopic 470-20) and Derivatives and Hedging - Contracts in Entity's Own Equity (Subtopic 815-40)," effective January 1, 2022, the equity portion of the debt conversion feature recorded upon the issuance of the 2019 Notes, or the debt discount, was reversed along with the total amortization taken on that discount. Since there was no debt discount, no amortization was taken in the three and six months ended June 30, 2022.

Amortization of debt issuance costs

In accounting for the transaction costs related to the issuance of the 2019 Notes, the Company allocated the total costs incurred to the liability and equity components of the 2019 Notes based on their relative values. Transaction costs attributable to the liability component are amortized to amortization of debt issuance costs ~~and contractual coupon interest,~~on the consolidated statements of comprehensive income. Amortization of debt issuance costs increased ~~$0.2 million and $0.4 million for~~during the three and ~~nine~~six months ended ~~September~~June 30, ~~2021,~~2022, as compared to the same periods ~~in 2020.~~of 2021. This is a result of the decrease in the balance of debt issuance costs that are being amortized. As these costs decrease, the carrying value of the debt increases and interest calculated based on the carrying value increases as well.

Other expenses

The change in other expenses, net during the three and ~~nine~~six months ended ~~September~~June 30, ~~2021,~~2022, compared to the same ~~period~~periods of ~~2020,~~2021, is primarily attributable to realized foreign currency losses related to ~~amounts due from non-Swedish krona-based~~transactions with customers and vendors.

Income tax provision

Income tax provision for the three and ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020~~2021 was as follows:


	Three Months Ended June 30,						Increase/(Decrease)					Six Months Ended June 30,						Increase/(Decrease)
	2022			2021			$ Change		% Change			2022			2021			$ Change		% Change
	(Amounts in thousands, except for percentage data)
Income tax provision	$	9,895		$	8,125		$	1,770		21.8	%	$	21,862		$	11,780		$	10,082		85.6	%
Effective tax rate		16.6	%		18.3	%							18.4	%		15.2	%

Three Months Ended
September 30,

Increase/(Decrease)

Nine Months Ended
September 30,

Increase/(Decrease)

2021

2020

$ Change

% Change

2021

2020

$ Change

% Change

(Amounts in thousands, except for percentage data)

Income tax provision

$
7,734

$
3,191

$
4,543

142.4
%

$
19,514

$
4,211

$
15,303

363.4
%
Effective tax rate

18.8
%

18.0
%

16.4
%

9.5
%

For the three and ~~nine~~six months ended ~~September~~June 30, ~~2021,~~2022, we recorded an income tax provision of ~~$7.7~~$9.9 million and ~~$19.5~~$21.9 million, respectively. The effective tax rate was ~~18.8%~~16.6% and ~~16.4%~~18.4% for the three and ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022, respectively, and is based upon the estimated income for the year ending December 31, ~~2021~~2022 and the composition of income in different jurisdictions. The ~~increase~~difference in effective tax rates between the periods was primarily due to higher income before income taxes, lower windfall benefits recognized on stock option exercises and the vesting of stock units partially offset by lower U.S. taxation of foreign earnings. ~~The~~Our effective tax rate for the three and ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 was lower than the U.S. statutory rate of 21% primarily due to business tax credits and windfall benefits on stock option exercises and the vesting of stock units. For the three and ~~nine~~six months ended ~~September~~June 30, ~~2020,~~2021, we recorded an income tax provision of ~~$3.2~~$8.1 million and ~~$4.2~~$11.8 million, respectively. The effective tax rate was ~~18.0%~~18.3% and ~~9.5%~~15.2% for the three and ~~nine~~six months ended ~~September~~June 30, ~~2020~~2021, respectively, and is based upon the estimated income for the year ending December 31, ~~2020~~2021 and the composition of income in different jurisdictions.

~~The~~ Our effective tax rate for the three and ~~nine~~six months ended ~~September~~June 30, ~~2020~~2021 was lower than the U.S. statutory rate of 21% primarily due to business tax credits and windfall benefits on stock option exercise and the vesting of stock units.

Non-GAAP Financial Measures

We provide non-GAAP adjusted income from operations; adjusted net income; and adjusted EBITDA as supplemental measures to GAAP, measures regarding our operating performance. These financial measures exclude the items detailed below and, therefore, have not been calculated in accordance with GAAP. A detailed explanation and a reconciliation of each non-GAAP financial measure to its most comparable GAAP financial measure are provided below.

We include this financial information because we believe these measures provide a more accurate comparison of our financial results between periods and more accurately reflect how management reviews its financial results. We excluded the impact of certain acquisition-related items because we believe that the resulting charges do not accurately reflect the performance of our ongoing operations for the period in which such charges are incurred.

Non-GAAP adjusted income from operations

Non-GAAP adjusted income from operations is measured by taking income, from operations as reported in accordance with GAAP and excluding inventory step-up charges, acquisition and integration costs, contingent consideration fair value adjustments, and intangible amortization booked through our consolidated statements of comprehensive income. The following is a reconciliation of income from operations in accordance with GAAP to non-GAAP adjusted income from operations for the three and ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020:~~2021:


	Three Months Ended September 30,				Nine Months Ended September 30,				Three Months Ended June 30,					Six Months Ended June 30,
	2021		2020		2021		2020		2022			2021		2022			2021
	(Amounts in thousands)								(Amounts in thousands)
GAAP income from operations	$	45,194	$	20,961	$	129,817	$	52,404	$	63,168		$	48,240	$	123,168		$	84,623
Non-GAAP adjustments to income from operations:
Inventory step-up charges		270		144		1,868		144		—			—		—			1,598
Acquisition and integration costs		5,824		1,849		11,593		6,536		2,702			3,218		5,891			5,769
Contingent consideration										(6,884	)		—		(9,295	)		—
Intangible amortization		5,677		3,925		16,001		11,677		6,572			5,161		13,165			10,323
Non-GAAP adjusted income from operations	$	56,965	$	26,879	$	159,279	$	70,761	$	65,558		$	56,619	$	132,929		$	102,313

Non-GAAP adjusted net income

Non-GAAP adjusted net income is measured by taking net income as reported in accordance with GAAP and excluding acquisition and integration costs, intangible amortization, inventory step-up charges, loss on conversion of debt, non-cash interest expense, amortization of debt issuance costs, contingent consideration fair value adjustments and the tax effects of these items.

The following are reconciliations of net income in accordance with GAAP to non-GAAP adjusted net income for the three and ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020:~~2021:


	Three Months Ended September 30,												Three Months Ended June 30,
	2021						2020						2022						2021
				Fully Diluted						Fully Diluted						Fully Diluted						Fully Diluted
				Earnings per						Earnings per						Earnings per						Earnings per
	Amount			Share			Amount			Share			Amount			Share*			Amount			Share*
	(Amounts in thousands, except per share data)												(Amounts in thousands, except per share data)
GAAP net income	$	33,498		$	0.58		$	14,552		$	0.27		$	49,861		$	0.88		$	36,233		$	0.64
Non-GAAP adjustments to net income:
Inventory step-up charges		270			0.00			144			0.00			—			—			—			—
Acquisition and integration costs		5,824			0.10			1,849			0.03			2,702			0.05			3,218			0.06
Contingent consideration														(6,884	)		(0.12	)		—			—
Intangible amortization		5,677			0.10			3,925			0.07			6,572			0.12			5,161			0.09
Loss on conversion of debt		1			—			—			—			—			—			4			0.00
Non-cash interest expense		2,902			0.05			2,759			0.05
Amortization of debt issuance costs(1)														453			0.01			357			0.01
Non-cash interest expense(1)														—			—			2,505			0.04
Tax effect of non-GAAP charges		(3,467	)		(0.06	)		(2,072	)		(0.04	)		(1,317	)		(0.02	)		(2,615	)		(0.05	)
Non-GAAP adjusted net income	$	44,705		$	0.78		$	21,157		$	0.40		$	51,387		$	0.91		$	44,863		$	0.79


	Six Months Ended June 30,
	2022						2021
				Fully Diluted						Fully Diluted
				Earnings per						Earnings per
	Amount			Share			Amount			Share
	(Amounts in thousands, except per share data)
GAAP net income	$	96,825		$	1.68		$	65,683		$	1.16
Non-GAAP adjustments to net income:
Inventory step-up charges		—			—			1,598			0.03
Acquisition and integration costs		5,891			0.10			5,769			0.10
Contingent consideration		(9,295	)		(0.16	)		—			—
Intangible amortization		13,165			0.23			10,323			0.18
Loss on conversion of debt		—			—			4			0.00
Amortization of debt issuance costs(1)		905			0.01			709			0.01
Non-cash interest expense		—			—			4,981			0.09
Tax effect of non-GAAP charges		(2,359	)		(0.04	)		(5,437	)		(0.10	)
Non-GAAP adjusted net income	$	105,132		$	1.82		$	83,630		$	1.47

(1)

See Note 12, "Earnings Per Share," for more information on the effects of adopting ASU 2020-06, “Debt - Debt with Conversion and Other Options (Subtopic 470-20) and Derivatives and Hedging - Contracts in Entity’s Own Equity (Subtopic 815-40),” which we adopted effective January 1, 2022 to these financial statement line items.

Nine Months Ended September 30,

2021

2020

Fully Diluted

Fully Diluted

Earnings per

Earnings per

Amount

Share

Amount

Share

(Amounts in thousands, except per share data)

GAAP net income

$
99,181

$
1.74

$
40,228

$
0.75

Non-GAAP adjustments to net income:

Inventory step-up charges

1,868

0.03

144

0.00

Acquisition and integration costs

11,593

0.20

6,536

0.12

Intangible amortization

16,001

0.28

11,677

0.22

Loss on conversion of debt

6

—

—

—

Non-cash interest expense

8,592

0.15

8,174

0.15

Tax effect of non-GAAP charges

(8,904
)

(0.16
)

(6,334
)

(0.12
)
Non-GAAP adjusted net income

$
128,337

$
2.25

$
60,425

$
1.13

* Per share totals may not add due to rounding.

Adjusted EBITDA

Adjusted EBITDA is measured by taking net income as reported in accordance with GAAP, excluding investment income, interest expense, taxes, depreciation and amortization, acquisition and integration costs, inventory step-up charges, loss on conversion of debt and contingent consideration fair value adjustments booked through our consolidated statements of

comprehensive income. The following is a reconciliation of net income in accordance with GAAP to adjusted EBITDA for the three and ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022 and ~~2020:~~2021:


	Three Months Ended September 30,						Nine Months Ended September 30,						Three Months Ended June 30,						Six Months Ended June 30,
	2021			2020			2021			2020			2022			2021			2022			2021
	(Amounts in thousands)												(Amounts in thousands)
GAAP net income	$	33,498		$	14,552		$	99,181		$	40,228		$	49,861		$	36,233		$	96,825		$	65,683
Non-GAAP EBITDA adjustments to net income:
Investment income		(44	)		(82	)		(137	)		(1,699	)		(708	)		(41	)		(785	)		(93	)
Interest expense		3,220			3,052			9,470			9,032			271			282			563			560
Non-cash interest expense(1)														—			2,505			—			4,981
Amortization of debt issuance costs														453			357			905			709
Income tax provision		7,734			3,191			19,514			4,211			9,895			8,125			21,862			11,780
Depreciation		4,308			2,757			11,360			7,820			5,500			3,797			10,713			7,052
Amortization		5,705			3,953			16,084			11,760
Intangible amortization														6,599			5,190			13,220			10,379
EBITDA		54,421			27,423			155,472			71,352		$	71,871		$	56,448		$	143,303		$	101,051
Other non-GAAP adjustments:
Inventory step-up charges		270			144			1,868			144			—			—			—			1,598
Acquisition and integration costs		5,824			1,849			11,593			6,536			2,702			3,218			5,891			5,769
Contingent consideration														(6,884	)		—			(9,295	)		—
Loss on conversion of debt		1			—			6			—			—			4			—			4
Adjusted EBITDA	$	60,516		$	29,416		$	168,939		$	78,032		$	67,689		$	59,670		$	139,899		$	108,422

(1)

See Note 12, "Earnings Per Share," for more information on the effects of adopting ASU 2020-06, which we adopted effective January 1, 2022.

Liquidity and Capital Resources

We have financed our operations primarily through revenues derived from product sales, the issuance of the 2019 Notes in July 2019 and the issuance of common stock in our December 2020, July 2019 and May 2019 public ~~offerings (the “Offerings”).~~offerings. Our revenue for the foreseeable future will primarily be limited to our bioprocessing product revenue.

At ~~September~~June 30, ~~2021,~~2022, we had cash and cash equivalents of ~~$621.1~~$596.5 million compared to cash and cash equivalents of ~~$717.3~~$603.8 million at December 31, ~~2020.~~2021.

2019 Notes have been converted by the noteholders since ~~December 31, 2020.~~the issuance of the 2019 Notes, including $9,000 during the second quarter of 2022. The conversions resulted in the issuance of a nominal number of shares of the Company’s common stock to the ~~holder, and~~noteholders. The Company continues to classify the Company recorded a loss of approximately $6,000 on the conversion of these notes, which is included in other expenses, net on our consolidated statements of comprehensive income for the three and nine months ended September 30, 2021. The 2019 Notes have a face value of $287.5 million and a carrying value and a carrying value of ~~$252.3 million and continue to be classified~~the 2019 Notes as current liabilities on the Company’s consolidated balance sheet ~~as of September~~at June 30, ~~2021. It is the Company’s policy and intent to settle the face value of the 2019 Notes in cash and any excess conversion premium in shares of our common stock.~~

In July 2020, the Company entered into a First Amendment to the lease agreement for its Marlborough, Massachusetts facility, expanding the leased space by 66,939 square feet. In December 2020, the Company signed the Second Amendment to the lease agreement, changing the commencement date from April 1, 2021 to January 1, 2021. As a result, under the amended lease agreement, the Company will pay an additional $5.7 million in base rent over the life of the lease, which expires on November 30, 2028.

In May 2021, the Company entered into an agreement to lease approximately 64,000 square feet of space at a site in Hopkinton, Massachusetts, which expires on August 15, 2034. This space will be used as an assembly center for our ProConnex® ~~single-use flow path products. Under the lease, the Company will pay $17.7 million in base rent over the term of the lease.~~2022.

Cash flows


	Six Months Ended June 30,						Increase/(Decrease)
	2022			2021			$ Change
	(Amounts in thousands)
Operating activities	$	68,834		$	46,913		$	21,921
Investing activities		(54,434	)		(26,198	)		(28,236	)
Financing activities		(14,314	)		852			(15,166	)
Effect of exchange rate changes on cash and cash equivalents		(7,388	)		(4,532	)		(2,856	)
Net (decrease) increase in cash and cash equivalents	$	(7,302	)	$	17,035		$	(24,337	)

Nine Months Ended
September 30,

Increase/(Decrease)

2021

2020

$ Change

(Amounts in thousands)

Operating activities

$
69,396

$
47,754

$
21,642

Investing activities

(158,893
)

(43,097
)

(115,796
)
Financing activities

730

7,078

(6,348
)
Effect of exchange rate changes on cash, cash equivalents
and restricted cash

(7,427
)

4,160

(11,587
)
Net (decrease) increase in cash, cash equivalents and restricted cash

$
(96,194
)

$
15,895

$
(112,089
)

Operating activities

For the six months ended June 30, 2022, our operating activities provided cash of $68.8 million reflecting net income of $96.8 million and non-cash charges totaling $31.5 million primarily related to depreciation, amortization, contingent consideration adjustments, deferred income taxes and stock-based compensation charges. An increase in accounts receivable consumed $8.4 million of cash and was primarily driven by the 35.4% year-to-date increase in revenues. Additionally, we had an increase in inventory manufactured of $58.1 million to support expected increases in future revenue. A decrease in accrued liabilities of $4.0 million relates to the payout of employee bonuses and a decrease in our estimated income tax provision during the first half of 2022. Offsetting these uses of cash was a $6.3 million increase in accounts payable which correlates to the increase in inventory and is also a result of the timing of payments to vendors and a decrease in prepaid expenses driven by a decrease in prepaid corporate income taxes. The remaining cash provided by operating activities resulted from favorable changes in various other working capital accounts.

For the ~~nine~~six months ended ~~September~~June 30, 2021, our operating activities provided cash of ~~$69.4~~$46.9 million reflecting net income of ~~$99.2~~$65.7 million and non-cash charges totaling ~~$65.1~~$43.8 million primarily related to depreciation, amortization, inventory step-up amortization, deferred income taxes, ~~amortization of debt discount and issuance costs~~non-cash interest expense and stock-based compensation charges. An increase in accounts receivable consumed ~~$52.0~~$31.9 million of cash and was primarily driven by the ~~87.9%~~87.0% year-to-date increase in revenues. AnAdditionally, we had an increase in inventory manufactured of ~~$61.6~~$42.8 million ~~supports~~to support expected increases in future revenue. The increases in accounts receivable and inventory manufactured are offset by an increase in accounts payable of ~~$9.0~~$8.3 million, which was primarily due to increased inventory purchases to support customer orders, an increase in accrued liabilities of ~~$10.1~~$4.5 million, which was due to an increase in ~~the accrual~~accruals for expected costs, and to a decrease in deferred revenue related to products shipped during the first half of 2021. The remaining ~~net~~ cash used in operating activities resulted from unfavorable ~~changes in various other working capital accounts.~~

For the nine months ended September 30, 2020, our operating activities provided cash of $47.8 million reflecting net income of $40.2 million and non-cash charges totaling $40.5 million primarily related to depreciation, amortization, deferred income taxes, non-cash interest expense and stock-based compensation charges. An increase in accounts receivable consumed $11.5 million of cash and was primarily driven by the 35.4% year-to-date increase in revenues. An increase in inventory consumed $22.8 million to support future revenue. An increase in accounts payable and accrued liabilities of $1.1 million was due primarily to increased inventory purchases to support customer orders, offset by payment of acquisition-related bonuses for C Technologies during the second quarter of 2020. The remaining cash provided by operating activities resulted from favorable changes in various other working capital accounts.

Investing activities

Our investing activities consumed ~~$158.9~~$54.4 million of cash during the ~~nine~~six months ended ~~September~~June 30, ~~2021. We used $121.0~~2022 and $26.2 million ~~in cash (net~~ of cash ~~received) for~~during the ~~Polymem Acquisition and the Avitide Acquisition, in the aggregate. Capital~~six months ended June 30, 2021, mainly due to capital expenditures ~~consumed $37.9 million~~ as we continue to increase our manufacturing capacity worldwide. Of these expenditures, ~~$2.9~~$1.9 million and $2.2 million represented capitalized costs related to our internal-use ~~software.~~software for the six months ended June 30, 2022 and 2021, respectively.

Our investing activities consumed $43.1 million of cash during the nine months ended September 30, 2020 related to the acquisition of Engineered Molding Technology LLC (“EMT”) on July 13, 2020, as well as ongoing capital expenditures. We consumed $28.5 million in cash (net of cash received) for EMT. Capital expenditures included $3.6 million for capitalized costs related to our internal-use software.

Financing activities

~~Cash provided by~~Our financing activities consumed $14.3 million of ~~$0.7 million~~cash for the ~~nine~~six months ended ~~September~~June 30, ~~2021~~2022, which included ~~proceeds from stock option exercises during the period offset by~~ cash disbursed in relation to shares withheld to cover employee income ~~taxes~~tax due upon the vesting and release of restricted stock ~~units. Proceeds~~units of $14.8 million. This was partially offset by proceeds received from stock option exercises during the ~~nine months ended September 30, 2021 were $2.0 million offset by $1.3 million~~period of ~~cash disbursed to pay tax obligation on the vesting of restricted stock units.~~$0.5 million.

Cash provided by financing activities of ~~$7.1~~$0.9 million for the ~~nine~~six months ended ~~September~~June 30, ~~2020~~2021 included proceeds from stock option exercises ~~and the vesting of stock units~~ during the period.

Working capital decreased by ~~$22.0~~$3.9 million to ~~$561.4~~$552.5 million at ~~September~~June 30, ~~2021~~2022 from ~~$583.4~~$556.4 million at December 31, ~~2020~~2021 due to the various changes noted above.

Our future capital requirements will depend on many factors, including the following:

•

the expansion of our bioprocessing business;

•

the ability to sustain sales and profits of our bioprocessing ~~products;~~products and successfully integrate them into our business;

•

our ability to acquire additional bioprocessing products;

•

the scope of and progress made in our R&D activities;

•

the scope of investment in our intellectual property portfolio;

•

contingent consideration earnout payments resulting from our acquisitions;

•

the extent of any share repurchase activity; and

•

the success of any proposed financing efforts.

Absent acquisitions of additional products, product candidates or intellectual property, we believe our current cash balances are adequate to meet our cash needs for at least the next 24 months from the date of this filing. We expect operating expenses for the rest of the year to increase as we continue to expand our bioprocessing business. We expect to incur continued spending related to the development and expansion of our bioprocessing product lines and expansion of our commercial capabilities for the foreseeable future. Our future capital requirements may include, but are not limited to, purchases of property, plant and equipment, the acquisition of additional bioprocessing products and technologies to complement our existing manufacturing capabilities and continued investment in our intellectual property portfolio.

We plan to continue to invest in our bioprocessing business and in key R&D activities associated with the development of new bioprocessing products. We actively evaluate various strategic transactions on an ongoing basis, including ~~licensing or~~ acquiring ~~complementary~~ products, technologies or businesses that would complement our existing portfolio. We continue to seek to acquire such potential assets that may offer us the best opportunity to create value for our shareholders. In order to acquire such assets, we may need to seek additional financing to fund these investments. If our available cash balances and anticipated cash flow from operations are insufficient to satisfy our liquidity requirements, including because of any such acquisition-related financing needs or lower demand for our products, we may seek to sell common or preferred equity or convertible debt securities, enter into a credit facility or another form of third-party funding, or seek other debt funding. The sale of equity and convertible debt securities may result in dilution to our shareholders, and those securities may have rights senior to those of our common shares. If we raise additional funds through the issuance of preferred stock, convertible debt

securities or other debt financing, these securities or other debt could contain covenants that would restrict our operations. Any other third-party funding arrangement could require us to relinquish valuable rights. We may require additional capital beyond our currently anticipated amounts. Additional capital may not be available on reasonable terms, if at all.

~~Off-Balance Sheet Arrangements~~

~~We do not have any special purpose entities or off-balance sheet financing arrangements as of September 30, 2021.~~

Net Operating Loss Carryforwards

At December 31, ~~2020, we~~2021, the Company had federal net operating loss carryforwards of ~~$6.4~~$46.2 million, ~~remaining.~~state net operating loss carryforwards of $4.0 million and foreign net operating loss carryforwards of $6.1 million. Federal net operating loss carryforwards of $19.1 million will expire at various dates through 2037. The other $27.1 million of the federal net operating loss carryforwards have unlimited carryforward periods. The total state net operating loss carryforwards will expire at various dates through 2041, while the foreign net operating loss carryforwards do not expire. We had business tax credits carryforwards of ~~$9.4~~$2.7 million available to reduce future federal and state income taxes, if any. The business tax credits carryforwards will continue to expire at various dates through December ~~2039.~~2041. Net operating loss carryforwards and available tax credits are subject to review and possible adjustment by the Internal Revenue Service, state and foreign jurisdictions and may be limited in the event of certain changes in the ownership interest of significant shareholders.

Effects of Inflation

Our assets are primarily monetary, consisting of cash, cash equivalents and marketable securities. Because of their liquidity, these assets are not directly affected by inflation. Since we intend to retain and continue to use our equipment, furniture and fixtures and leasehold improvements, we believe that the incremental inflation related to replacement costs of such items will not materially affect our operations. However, the rate of inflation affects our expenses, such as those for employee compensation and contract services, which could increase our level of expenses and the rate at which we use our resources.

Cautionary Statement Regarding Forward-Looking Statements

This Quarterly Report on Form 10-Q contains forward-looking statements which are made pursuant to the safe harbor provisions of Section 27A of the Securities Act of 1933, as amended, and Section 21E of the Securities Exchange Act of 1934, as amended (the “Exchange Act”). The forward-looking statements in this Quarterly Report on Form 10-Q do not constitute guarantees of future performance. Investors are cautioned that statements in this Quarterly Report on Form 10-Q which are not strictly historical statements, including, without limitation, express or implied statements or guidance regarding current or future financial performance and position, potential impairment of future earnings, management’s strategy, plans and objectives for future

operations or acquisitions, product development and sales, product candidate research, development and regulatory approval, SG&A expenditures, intellectual property, development and manufacturing plans, availability of materials and product and adequacy of capital resources, our financing plans and the projected continued impact of, and response to, ~~the~~ COVID-19 ~~coronavirus pandemic and the related downturn of the U.S. and global economies~~ constitute forward-looking statements. These forward-looking statements are based on current expectations, estimates, forecasts and projections about the industry and markets in which the Company operates, and management’s beliefs and assumptions. The Company undertakes no obligation to publicly update or revise the statements in light of future developments. In addition, other written and oral statements that constitute forward-looking statements may be made by the Company or on the Company’s behalf. Words such as “expect,” “seek,” “anticipate,” “intend,” “plan,” “believe,” “could,” “estimate,” “may,” “target,” “project,” or variations of such words and similar expressions are intended to identify forward-looking statements. Such forward-looking statements are subject to a number of risks and uncertainties that could cause actual results to differ materially from those anticipated, including, without limitation, risks associated with the following: the ~~ultimate~~ impact of ~~the coronavirus pandemic~~COVID-19 on demand for our products and on our business or financial results; the success of current and future collaborative or supply relationships, including our agreements with Cytiva, MilliporeSigma and ~~Purolite;~~Purolite Life Sciences, an Ecolab Inc. company; our ability to successfully grow our bioprocessing business, including as a result of acquisitions, commercialization or partnership opportunities, and our ability to develop and commercialize products; our ability to obtain required regulatory approvals; our compliance with all U.S. Food and Drug Administration regulations, our ability to obtain, maintain and protect intellectual property rights for our products; the risk of litigation regarding our patent and other intellectual property rights; the risk of litigation with collaborative partners; our ~~limited~~ manufacturing capabilities and our dependence on third-party manufacturers and value-added resellers; the effect of ~~the~~ COVID-19, ~~coronavirus pandemic,~~ including mitigation efforts and economic effects, on our business operations and the operations of our customers and suppliers; our ability to hire and retain skilled personnel; the market acceptance of our products, reduced demand for our products that adversely impacts our future revenues, cash flows, results of operations and financial condition; our ability to integrate ~~Non-Metallic Solutions,~~

~~Inc., ARTeSYN Biosolutions Holdings Ireland Limited,~~ Polymem, ~~S.A.~~Avitide and ~~Avitide, Inc.~~BioFlex businesses successfully into our business and achieve the expected benefits of the acquisitions; our ability to compete with larger, better financed life sciences companies; our history of losses and expectation of incurring losses; our ability to generate future revenues; our ability to successfully integrate our recently acquired businesses; our ability to raise additional capital to fund potential acquisitions; our volatile stock price; and the effects of our anti-takeover provisions. Further information on potential risk factors that could affect our financial results are included in the filings made by us from time to time with the SEC including under the sections entitled “Risk Factors” in our Form 10-K.

ITEM 3. QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISK

Interest Rate Risk

We have historically held investments in commercial paper, U.S. Government and agency securities as well as corporate bonds and other debt securities. As a result, we have been exposed to potential loss from market risks that may occur as a result of changes in interest rates, changes in credit quality of the issuer or otherwise. We do not have any such investments as of ~~September~~June 30, ~~2021.~~2022. As a result, a hypothetical 100 basis point increase in interest rates would have no effect on our cash position as of ~~September~~June 30, ~~2021.~~2022.

We generally place our marketable security investments in high quality credit instruments, as specified in our investment policy guidelines. We believe that the conservative nature of our investments mitigates our interest rate exposure, and our investment policy limits the amount of our credit exposure to any one issue, issuer (with the exception of U.S. agency obligations) and type of instrument. We do not expect any material losses from our marketable security investments and therefore believe that our potential interest rate exposure is limited.

Foreign Exchange Risk

The reporting currency of the Company is U.S. dollars, and the functional currency of each of our foreign subsidiaries is its respective local currency. Our foreign currency exposures include the Swedish krona, Euro, British pound, Chinese yuan, Japanese yen, Singapore dollar, South Korean won and Indian rupee; of these, the primary foreign currency exposures are the Swedish krona, Euro and British pound. Exchange gains or losses resulting from the translation between the transactional currency and the functional currency are included in net income. Fluctuations in exchange rates may adversely affect our results of operations, financial position and cash flows. We currently do not seek to hedge this exposure to fluctuations in exchange rates.

ITEM 4. CONTROLS AND PROCEDURES

Disclosure Controls and Procedures

The Company’s management, with the participation of the principal executive officer and the principal financial officer, has evaluated the effectiveness of the Company’s disclosure controls and procedures (as defined in Rules 13a-15(e) or 15d-15(e) under the Exchange Act) as of the end of the period covered by this report. Based on such evaluation, the principal executive officer and principal financial officer have concluded that, as of the end of such period, the Company’s disclosure controls and procedures were effective at the reasonable assurance level.

Changes in Internal Control

We acquired Polymem S.A. (“Polymem”) on July 1, 2021 and Avitide Inc. (“Avitide”) on September 20, 2021. The financial results of these acquisitions are included in our unaudited consolidated financial statements as of September 30, 2021 and for the quarter then ended. As these acquisitions occurred in the third quarter of 2021, the scope of our assessment of our internal control over financial reporting does not include Polymem and Avitide. These exclusions are in accordance with the Securities and Exchange Commission’s general guidance that an assessment of a recently acquired business may be omitted from our scope in the year of such acquisition.

~~Other than the foregoing, there~~There have been no changes in our internal control over financial reporting identified in connection with the evaluation required by paragraph (d) of ~~Securities~~ Exchange Act Rule 13a-15 or Rule 15d-15 that occurred in the three months ended ~~September~~June 30, ~~2021~~2022 that have materially affected, or are reasonably likely to materially affect, our internal control over financial reporting.

3938

PART II. OTHER INFORMATION

ITEM 1. LEGAL PROCEEDINGS

From time to time, we may be subject to legal proceedings and claims in the ordinary course of business. We are not currently aware of any such proceedings or claims that we believe will have, individually or in the aggregate, a material adverse effect on our business, financial condition or results of operations.

ITEM 1A. RISK FACTORS

The matters discussed in this Quarterly Report on Form 10-Q include forward-looking statements that involve risks or uncertainties. These statements are neither promises nor guarantees, but are based on various assumptions by management regarding future circumstances, over many of which Repligen has little or no control. A number of important risks and uncertainties, including those identified under the caption “Risk Factors” in Part I, Item 1A of our Form 10-K for the period ended December 31, ~~2020~~2021 and in subsequent filings, could cause our actual results to differ materially from those in the forward-looking statements. There are no material changes to the risk factors described in our Form 10-K for the period ended December 31, ~~2020.~~2021.

ITEM 2. UNREGISTERED SALES OF ~~EQUITY~~EQUITY SECURITIES AND USE OF PROCEEDS

None.

~~Avitide Acquisition~~

~~Pursuant to the Merger Agreement described in Note 3,~~ ~~"Acquisitions,"~~ to the consolidated financial statements, on September 20, 2021, the Company issued 271,096 unregistered shares of the Company's common stock, totaling $77.6 million, as part of the consideration for the Avitide Acquisition. The issuance is not registered under the Securities Act of 1933, as amended, in reliance upon the exemption from registration provided by Rule 506(b) of Regulation D.

ITEM 3. DEFAULTS UPON ~~SENIOR~~SENIOR SECURITIES

None.

ITEM 4. MINE SAFETY DISCLOSURES

Not applicable.

ITEM 5. OTHER INFORMATION

None.

4039

ITEM 6. EXHIBITS

(a)

Exhibits


Exhibit Number		Document Description

3.1		Restated Certificate of Incorporation, dated June 30, 1992 and amended September 17, 1999 (filed as Exhibit 3.1 to Repligen Corporation’s Quarterly Report on Form 10-Q for the quarter ended September 30, 1999 and incorporated herein by reference).

3.2		Certificate of Amendment to the Certificate of Incorporation of Repligen Corporation, effective as of May 16, 2014 (filed as Exhibit 3.1 to Repligen Corporation’s Current Report on Form 8-K filed on May 19, 2014 and incorporated herein by reference).

3.3		Third Amended and Restated Bylaws (filed as Exhibit 3.1 to Repligen Corporation’s Current Report on Form 8-K filed on January 28, 2021 and incorporated herein by reference).

10.1		Repligen Corporation Amended and Restated Severance and Change in Control Plan, effective as of May 26, 2022 (filed as Exhibit 10.1 to Repligen Corporation's Current Report on Form 8-K filed on June 1, 2022 and incorporated herein by reference).

10.2		Third Amended and Restated Employment Agreement, dated as of May26, 2022, by and between Repligen Corporation and Tony J. Hunt (filed as Exhibit 10.2 to Repligen Corporation's Current Report on Form 8-K filed on June 1, 2022 and incorporated herein by reference).

10.3		Repligen Corporation Amended and Restated Non-Employee Directors' Compensation Policy (filed as Exhibit 10.3 to Repligen Corporation's Current Report on Form 8-K filed on June 1, 2022 and incorporated herein by reference).

31.1 +		Rule 13a-14(a)/15d-14(a) Certification.

31.2 +		Rule 13a-14(a)/15d-14(a) Certification.

32.1 *		Certification pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.

101.INS+		XBRL Instance Document – the instance document does not appear in the Interactive Data File because its XBRL tags are embedded within the Inline XBRL document.

101.SCH+		Inline XBRL Taxonomy Extension Schema Document.

101.CAL+		Inline XBRL Taxonomy Extension Calculation Linkbase Document.

101.DEF+		Inline XBRL Taxonomy Extension Definition Linkbase Document.

101.LAB+		Inline XBRL Taxonomy Extension Label Linkbase Document.

101.PRE+		Inline XBRL Taxonomy Extension Presentation Linkbase Document.

104+		Cover Page Interactive Data File (formatted as Inline XBRL with applicable taxonomy extension information contained in Exhibits 101.*).

+ Filed herewith.

* Furnished herewith.

4140

SIGNATURES

Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned thereunto duly authorized.



	REPLIGEN CORPORATION

Date: ~~October 28, 2021~~August 2, 2022	By:	/S/ TONY J. HUNT
		Tony J. Hunt
		President and Chief Executive Officer
		(Principal executive officer)
		Repligen Corporation

Date: ~~October 28, 2021~~August 2, 2022	By:	/S/ JON SNODGRES
		Jon Snodgres
		Chief Financial Officer
		(Principal financial officer)
		Repligen Corporation

4241


	As of December 31, 2020
	Level 1		Level 2		Level 3		Total
Assets:
Money market accounts	$	549,030	$	—	$	—	$	549,030


Balance as of December 31, 2020	$	0
Acquisition date fair value of contingent consideration - earnout		79,962
Change in fair value		0
Balance as of September 30, 2021	$	79,962


Cash consideration	$	130,713
Equity consideration		69,422
Contingent consideration		1,548
Settlement of preexisting liabilities		2,310
Fair value of net assets acquired	$	203,993


Cash and cash equivalents	$	2,982
Accounts receivable		4,811
Inventory		8,592
Prepaid expenses and other current assets		5,561
Property and equipment		1,836
Operating lease right of use asset		1,611
Other noncurrent assets		26
Customer relationships		38,400
Developed technology		27,060
Trademark and tradename		1,630
Non-competition agreements		300
Goodwill		128,598
Accounts payable		(2,251	)
Accrued liabilities		(8,706	)
Deferred revenue		(3,583	)
Deferred tax liabilities, net		(1,240	)
Notes payable		(24	)
Operating lease liability		(417	)
Operating lease liability, long-term		(1,193	)
Fair value of net assets acquired	$	203,993


Cash and cash equivalents	$	1,163
Accounts receivable		415
Inventory		334
Prepaid expenses and other current assets		13
Property and equipment		73
Operating lease right of use asset		194
Customer relationships		6,370
Developed technology		1,810
Trademark and tradename		190
Non-competition agreements		90
Goodwill		6,713
Deferred tax assets		24
Accounts payable		(96	)
Accrued liabilities		(999	)
Operating lease liability		(136	)
Operating lease liability, long-term		(59	)
Fair value of net assets acquired	$	16,099


	2021
Balances from contracts with customers only:
Accounts receivable, net of reserves	$	122,048
Deferred revenue (included in accrued liabilities in the consolidated balance sheets)	$	16,337

Revenue recognized during the nine-month period ended September 30, 2021 relating to:
The beginning deferred revenue balance	$	13,071


Balance at December 31, 2020	$	618,305
Measurement period adjustment - NMS		(71	)
Measurement period adjustments - ARTeSYN		(60	)
Acquisition of Polymem		23,453
Acquisition of Avitide		193,463
Cumulative translation adjustment		(1,531	)
Balance at September 30, 2021	$	833,559


	Shares			Weighted average exercise price		Weighted-Average Remaining Contractual Term (in Years)		Aggregate Intrinsic Value (in Thousands)
Options outstanding at December 31, 2020		696,711		$	43.88		6.90	$	102,958
Granted		38,824		$	202.88
Exercised		(70,935	)	$	28.00
Forfeited/expired/cancelled		(6,000	)	$	48.05
Options outstanding at September 30, 2021		658,600		$	54.93		6.55	$	154,152
Options exercisable at September 30, 2021		343,909		$	38.68		5.87	$	86,085
Vested and expected to vest at September 30, 2021(1)		637,504					6.53	$	149,348


	Nine Months Ended September 30,
	2021						2020
				Fully Diluted						Fully Diluted
				Earnings per						Earnings per
	Amount			Share			Amount			Share
	(Amounts in thousands, except per share data)
GAAP net income	$	99,181		$	1.74		$	40,228		$	0.75
Non-GAAP adjustments to net income:
Inventory step-up charges		1,868			0.03			144			0.00
Acquisition and integration costs		11,593			0.20			6,536			0.12
Intangible amortization		16,001			0.28			11,677			0.22
Loss on conversion of debt		6			—			—			—
Non-cash interest expense		8,592			0.15			8,174			0.15
Tax effect of non-GAAP charges		(8,904	)		(0.16	)		(6,334	)		(0.12	)
Non-GAAP adjusted net income	$	128,337		$	2.25		$	60,425		$	1.13