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TABLE OF CONTENTS QUARTERLY REPORT ON FORM 10-Q FOR THE QUARTER ENDED SEPTEMBER 30, 2009

UNITED STATES
SECURITIES AND EXCHANGE COMMISSION
Washington, D.C. 20549



FORM 10-Q




ý

 

QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the quarterly period ended September 30, 20082009

or

o

 

TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the transition period fromto

Commission File No. 0-16614

Commission File No. 0-16614

PONIARD PHARMACEUTICALS, INC.
(Exact name of Registrant as specified in its charter)

Washington
(State or other jurisdiction of
incorporation or organization)
 91-1261311
(IRS Employer Identification No.)

7000 Shoreline Court, Suite 270, South San Francisco, CA 94080
(Address of principal executive offices)

Registrant's telephone number, including area code: (650) 583-3774

        Indicate by check mark whether the Registrant:registrant: (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the Registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days.

Yes ý    No o

        Indicate by check mark whether the registrant has submitted electronically and posted on its corporate Web site, if any, every Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T during the preceding 12 months (or for such shorter period that the registrant was required to submit and post such files). Yes o    No o

        Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, or a smaller reporting company. See definitions of "large accelerated filer," "accelerated filer" and "smaller reporting company" in Rule 12b-2 of the Exchange Act.

Large accelerated filero oAccelerated filer ý Accelerated filerý
Non-accelerated filero
(Do not check if a smaller reporting company)
 Smaller reporting companyo

        Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act).

Yes o    No ý

        As of October 31, 2008, 34,687,72430, 2009, 34,961,497 shares of the Registrant'sregistrant's common stock, $.02$0.02 par value per share, were outstanding.


Table of Contents


TABLE OF CONTENTS

QUARTERLY REPORT ON FORM 10-Q
FOR THE QUARTER ENDED SEPTEMBER 30, 20082009

PART I
 FINANCIAL INFORMATION
 PAGE







Item 1.

PART I

 Financial Statements:

FINANCIAL INFORMATION

  

Item 1.


 

Financial Statements:

Condensed Consolidated Balance Sheets as of September 30, 20082009 (Unaudited) and December 31, 2007 (unaudited)2008 (Note 1)


 


3



 

Condensed Consolidated Statements of Operations for the Three and Nine Months Ended September 30, 2009 and 2008 and 2007 (unaudited)(Unaudited)


 


4



 

Condensed Consolidated Statements of Cash Flows for the Nine Months Ended September 30, 2009 and 2008 and 2007 (unaudited)(Unaudited)


 


5



 

Notes to Condensed Consolidated Financial Statements (unaudited)(Unaudited)


 


6


Item 2.


 

Management's Discussion and Analysis of Financial Condition and Results of Operations


 


14

18

Item 3.


 

Quantitative and Qualitative Disclosures About Market Risk


 


19

25

Item 4.


 

Controls and Procedures


 


19

25

PART II


 

OTHER INFORMATION


 



 

Item 1A.


 

Risk Factors


 


20

26

Item 6.


 

Exhibits


 


20

26

Signatures


 




21

27

Exhibit Index


 




22

28

Table of Contents


PART I. FINANCIAL INFORMATION

Item 1.    Financial Statements


PONIARD PHARMACEUTICALS, INC. AND SUBSIDIARY

CONDENSED CONSOLIDATED BALANCE SHEETS

(unaudited)

(inIn thousands, except share data)

 
 September 30, 2008 December 31, 2007 
ASSETS       
Current assets:       
 Cash and cash equivalents $45,527 $29,335 
 Cash—restricted  281  281 
 Investment securities  38,515  63,286 
 Prepaid expenses and other current assets  1,370  955 
      
   Total current assets  85,693  93,857 
 

Facilities and equipment, net of depreciation of $1,236 and $954

  
1,183
  
1,121
 
 Other assets  309  141 
 Licensed products, net  9,110  10,021 
      
     Total assets $96,295 $105,140 
      

LIABILITIES AND SHAREHOLDERS' EQUITY

 

 

 

 

 

 

 

Current liabilities:

 

 

 

 

 

 

 
 Accounts payable $892 $677 
 Accrued liabilities  8,425  4,550 
 Current maturities of note payable and capital lease obligations  7,917  4,247 
      
   Total current liabilities  17,234  9,474 
      

Long-term liabilities:

 

 

 

 

 

 

 
 Note payable and capital lease obligations, net of current portion and discount of $3,311 and $1,018  19,094  6,561 
      
   Total long-term liabilities  19,094  6,561 
      

Shareholders' equity:

 

 

 

 

 

 

 
 Preferred stock, $.02 par value, 2,998,425 shares authorized:       
  Convertible preferred stock, Series 1, 205,340 shares issued and outstanding (entitled in liquidation to $5,300 and $5,175, respectively)  4  4 
 Common stock, $.02 par value, 200,000,000 shares authorized:       
  34,687,724 and 34,662,689 shares issued and outstanding  694  693 
 Additional paid-in capital  407,735  401,225 
 Accumulated deficit, including other comprehensive income (loss) of $(592) and $59  (348,466) (312,817)
      
   Total shareholders' equity  59,967  89,105 
      
     Total liabilities and shareholders' equity $96,295 $105,140 
      

 
 September 30, 2009 December 31, 2008 
 
 (Unaudited) (Note 1) 

ASSETS

       

Current assets:

       
 

Cash and cash equivalents

 $19,040 $44,144 
 

Cash—restricted

  281  281 
 

Investment securities

  21,074  28,611 
 

Prepaid expenses and other current assets

  918  977 
      
   

Total current assets

  41,313  74,013 
 

Facilities and equipment, net of depreciation of $1,202 and $1,319

  277  1,123 
 

Other assets

  154  289 
 

Licensed products, net

  7,896  8,807 
      
     

Total assets

 $49,640 $84,232 
      

LIABILITIES AND SHAREHOLDERS' EQUITY

       

Current liabilities:

       
 

Accounts payable

 $825 $604 
 

Accrued liabilities

  8,188  10,688 
 

Current portion of note payable

  8,561  7,886 
      
   

Total current liabilities

  17,574  19,178 

Long-term liabilities:

       
  

Note payable obligation, noncurrent portion, net

  11,848  17,407 

Commitments and contingencies (Note 13)

       

Shareholders' equity:

       
  

Preferred stock, $0.02 par value, 2,998,425 shares authorized:

       
    

Convertible preferred stock, Series 1, 205,340 shares issued and outstanding (entitled in liquidation to $5,300 and $5,175)

  4  4 
  

Common stock, $0.02 par value, 200,000,000 shares authorized:

       
    

34,820,603 and 34,687,724 shares issued and outstanding

  696  694 
  

Additional paid-in capital

  414,361  409,244 
  

Other comprehensive income/(loss)

  23  (354)
  

Accumulated deficit

  (394,866) (361,941)
      
    

Total shareholders' equity

  20,218  47,647 
      
     

Total liabilities and shareholders' equity

 $49,640 $84,232 
      

See notes to the condensed consolidated financial statements.


Table of Contents


PONIARD PHARMACEUTICALS, INC. AND SUBSIDIARY

CONDENSED CONSOLIDATED STATEMENTS OF OPERATIONS

(unaudited)

(inIn thousands, except per share amounts)

(Unaudited)

 
 Three Months Ended
September 30,
 Nine Months Ended
September 30,
 
 
 2008 2007 2008 2007 

Revenues

 $ $ $ $ 
          

Operating expenses:

             

Research and development

  9,024  5,050  24,511  16,362 

General and administrative

  3,383  2,806  11,289  8,584 
          
 

Total operating expenses

  12,407  7,856  35,800  24,946 
          

Loss from operations

  (12,407) (7,856) (35,800) (24,946)
          

Other income (expense):

             

Interest income

  547  1,319  2,210  3,062 

Interest expense

  (329) (422) (1,021) (1,332)

Other, net

  (48)   (12)  
          
 

Other income, net

  170  897  1,177  1,730 
          

Net loss

  
(12,237

)
 
(6,959

)
 
(34,623

)
 
(23,216

)

Preferred stock dividends

  
(125

)
 
(125

)
 
(375

)
 
(375

)
          

Net loss applicable to common shares

 $(12,362)$(7,084)$(34,998)$(23,591)
          

Net loss per share applicable to common shares—basic and diluted

 
$

(0.36

)

$

(0.20

)

$

(1.01

)

$

(0.80

)
          

Weighted average common shares outstanding—basic and diluted

  34,688  34,657  34,685  29,449 
          

 
 Three Months Ended
September 30,
 Nine Months Ended
September 30,
 
 
 2009 2008 2009 2008 

Operating expenses:

             
 

Research and development

 $5,396 $9,024 $19,153 $24,511 
 

General and administrative

  3,802  3,383  10,321  11,289 
 

Restructuring

      468   
 

Asset impairment loss

      588   
          
  

Total operating expenses

  9,198  12,407  30,530  35,800 
          
   

Loss from operations

  (9,198) (12,407) (30,530) (35,800)

Other income (expense):

             
 

Interest expense

  (750) (329) (2,413) (1,021)
 

Interest income and other, net

  71  499  396  2,198 
          
  

Total other income (expense)

  (679) 170  (2,017) 1,177 
   

Net loss

  (9,877) (12,237) (32,547) (34,623)

Preferred stock dividends

  (125) (125) (375) (375)
          
  

Net loss applicable to common shares

 $(10,002)$(12,362)$(32,922)$(34,998)
          

Net loss per share applicable to common shares -

             
 

basic and diluted

 $(0.29)$(0.36)$(0.95)$(1.01)
          

Weighted average common shares outstanding -

             
 

basic and diluted

  34,769  34,688  34,723  34,685 
          

See notes to the condensed consolidated financial statements.


Table of Contents


PONIARD PHARMACEUTICALS, INC. AND SUBSIDIARY

CONDENSED CONSOLIDATED STATEMENTS OF CASH FLOWS

(unaudited)
(In thousands)

(in thousands)(Unaudited)

 
 Nine Months Ended
September 30,
 
 
 2008 2007 

Cash flows from operating activities:

       

Net loss

 $(34,623)$(23,216)

Adjustments to reconcile net loss to net cash used in operating activities:

       

Depreciation and amortization

  1,193  1,130 

Amortization of discount on notes payable

  440  593 

Amortization of discount on investment securities

  (392) (716)

Stock options and warrants issued for services

  95  56 

Stock-based employee compensation

  5,519  3,480 

Change in operating assets and liabilities:

       
 

Prepaid expenses and other assets

  (415) (662)
 

Accounts payable

  215  (206)
 

Accrued liabilities

  3,750  1,271 
      
  

Net cash used in operating activities

  (24,218) (18,270)
      

Cash flows from investing activities:

       

Proceeds from sales and maturities of investment securities

  65,800  37,860 

Purchases of investment securities

  (41,288) (87,032)

Facilities and equipment purchases

  (344) (735)
      
  

Net cash provided by (used in) investing activities

  24,168  (49,907)
      

Cash flows from financing activities:

       

Net proceeds from bank note payable

  19,997   

Repayment of principal on notes payable

  (3,375) (2,900)

Payment of debt issuance costs

  (200)  

Proceeds from stock options and warrants exercised

  91   

Repayment of capital lease obligation

  (21) (28)

Net proceeds from issuance of common stock and warrants

    69,946 

Increase in restricted cash

    (145)

Payment of licensed product payable

    (5,000)

Payment of preferred dividends

  (250) (250)
      
  

Net cash provided by financing activities

  16,242  61,623 
      
   

Net increase (decrease) in cash and cash equivalents

  16,192  (6,554)
      

Cash and cash equivalents:

       

Beginning of period

  29,335  44,148 
      

End of period

 $45,527 $37,594 
      

Supplemental disclosure of non-cash financing activity:

       

Accrual of preferred dividend

 $125 $125 
      

Capital lease

 $ $133 
      

Supplemental disclosure of cash paid during the period for:

       

Interest

 $529 $759 
      

 
 Nine Months Ended
September 30,
 
 
 2009 2008 

Cash flows from operating activities:

       

Net loss

 $(32,547)$(34,623)

Adjustments to reconcile net loss to net cash used in operating activities:

       
 

Depreciation and amortization

  1,126  1,193 
 

Amortization of discount on notes payable

  1,088  440 
 

Accretion (amortization) of premium (discount) on investment securities

  322  (392)
 

Gain on disposal of facilities and equipment

  (43)  
 

Asset impairment loss

  588   
 

Restructuring

  32   
 

Stock-based compensation issued for services

  387  95 
 

Stock-based employee compensation

  4,325  5,519 
 

Change in operating assets and liabilities:

       
  

Prepaid expenses and other assets

  131  (415)
  

Accounts payable

  221  215 
  

Accrued liabilities

  (2,639) 3,729 
      

Net cash used in operating activities

  (27,009) (24,239)
      

Cash flows from investing activities:

       

Proceeds from maturities of investment securities

  39,150  65,800 

Purchases of investment securities

  (31,561) (41,288)

Facilities and equipment purchases

  (18) (344)

Proceeds from disposals of equipment and facilities

  97   
      

Net cash provided by investing activities

  7,668  24,168 
      

Cash flows from financing activities:

       

Net proceeds from bank note payable

    19,997 

Repayment of principal on note payable

  (5,914) (3,375)

Payment of debt issuance costs

    (200)

Proceeds from stock options exercised

  401  91 

Payment of preferred dividends

  (250) (250)
      

Net cash (used in) provided by financing activities

  (5,763) 16,263 
      

Net (decrease) increase in cash and cash equivalents

  (25,104) 16,192 

Cash and cash equivalents at beginning of period

  44,144  29,335 
      

Cash and cash equivalents at end of period

 $19,040 $45,527 
      

Supplemental disclosure of non-cash financing activities:

       

Accrual of preferred dividend

 $125 $125 

Supplemental disclosure of cash paid during the period for:

       

Interest

 $1,369 $529 

See notes to the condensed consolidated financial statements.


Table of Contents


PONIARD PHARMACEUTICALS, INC. AND SUBSIDIARY

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

(Unaudited)

Note 1. Basis of presentationPresentation

        The accompanying unaudited condensed consolidated financial statements include the accounts of Poniard Pharmaceuticals, Inc. and its subsidiary (the Company)"Company"). All intercompany balances and transactions have been eliminated in consolidation. The Company has historically experienced recurring operating losses and negative cash flows from operations. As of September 30, 2008, the Company had net working capital of $68,459,000 and had an accumulated deficit of $348,466,000 with total shareholders' equity of $59,967,000.

        The accompanying condensed consolidated financial statements contained herein have been prepared pursuant to the rules and regulations of the Securities and Exchange Commission (SEC)("SEC"). CertainAs permitted under those rules, certain footnotes or other financial information and note disclosuresthat are normally included in annual financial statements prepared in accordance withrequired by accounting principles generally accepted in the United States of America have been condensed or omitted pursuant to thosesuch rules and regulations, although the Company believes that the disclosures made are adequate to make the information presented not misleading. These financial statements should be read in conjunction with the Company's Annual Report on Form 10-K for the year ended December 31, 2007 filed with the SEC on March 13, 2008, and available on the SEC's website, www.sec.gov.

        The accompanying condensed consolidated financial statements are unaudited.regulations. In the opinion of the Company's management, the accompanying interim unaudited condensed consolidated financial statements reflectinclude all adjustments consisting(consisting only of normal recurring accrualsadjustments) necessary to present fairlyfor a fair presentation of the Company's financial position and cash flows as of September 30, 2008 and2009, the results of operations for the three and nine months ended September 30, 2009 and 2008 and 2007.cash flows for the nine months ended September 30, 2009 and 2008.

        The results of operations for the periodsperiod ended September 30, 2008 and 20072009 are not necessarily indicative of the expected operating results for the full year.

        The balance sheet as of December 31, 2008 has been derived from the audited financial statements at that date. The balance sheet does not include all of the information and footnotes required by accounting principles generally accepted in the United States for complete financial statements. For further information, refer to the financial statements and footnotes thereto included in the Company's annual report on Form 10-K for the year ended December 31, 2008 filed with the SEC on March 16, 2009, and available on the SEC's website,www.sec.gov.

        EstimatesReclassifications:    Certain balances and Uncertainties:results from prior years have been reclassified to conform to the Company's current year presentation. The Company's reclassifications had no effect on net earnings or shareholders' equity.

        Use of Estimates:    The preparation of financial statements in conformity with accounting principles generally accepted in the United States of America requires management to make estimates and assumptions that affect the reported amounts of assets and liabilities and disclosure of contingent assets and liabilities at the date of the financial statements and the reported amounts of revenues and expenses during the reporting period. Actual results could differ from those estimates.

        Subsequent Events Evaluation:    Management has reviewed and evaluated material subsequent events, if any, occurring after the balance sheet date of September 30, 2009 through the financial statements issuance date of November 6, 2009. All appropriate subsequent event disclosures, if any, have been made in the notes to the unaudited condensed consolidated financial statements.

        Going Concern:    The accompanying unaudited condensed consolidated financial statements have been prepared assuming that the Company will continue as a going concern, which contemplates the realization of assets and the satisfaction of liabilities in the normal course of business for a reasonable period of time. The Company has historically experienced recurring operating losses and negative cash flows from operations. As of September 30, 2009, the Company had working capital of $23,739,000, an accumulated deficit of $394,866,000 and total shareholders' equity of $20,218,000.

        The Company's current loan facility contains covenants that restrict certain financing activities by the Company and require the Company to maintain a minimum amount of unrestricted cash (see


Table of Contents


PONIARD PHARMACEUTICALS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 1. Basis of Presentation (Continued)


Note 5 for further details). Taking into account the minimum unrestricted cash requirement and the Company's projected operating results, the Company believes that its current cash, cash equivalents and investment securities balances will provide adequate resources to fund operations at least into the first quarter of 2010. However, given the uncertainties of outcomes of the Company's clinical trials, there is no assurance that the Company can achieve its projected operating results. The Company has no assurance that, especially in light of the current distressed economic environment, the lenders will be willing to waive or renegotiate the terms of the loan agreement to address or avoid financial or other defaults. These factors, among others, raise substantial doubt about the Company's ability to continue as a going concern. Management is developing plans to address the Company's liquidity needs, including raising additional capital through the public or private sale of equity or debt securities or through the establishment of credit or other funding facilities and entering into strategic collaborations, which may include joint ventures or partnerships for product development and commercialization, merger, sale of assets or other similar transactions, and taking actions to limit the Company's expenditures. There can be no assurance that the Company can obtain financing or otherwise raise additional funds, if at all, on terms acceptable to the Company or to its lenders.

Note 2. Fair value measurementsValue Measurements

        The Company holds available-for-sale securities that are measuredWe categorize assets and liabilities recorded at fair value whichin our condensed consolidated balance sheet based upon the level of judgment associated with inputs used to measure their value. Fair value is determined on a recurring basis. These securities are classified within Level 2 ofdefined as the fair value hierarchy prescribed by Statement of Financial Accounting Standard (SFAS) No. 157, "Fair Value Measurements," because the value of the securities is based on quoted market prices or broker/dealer quotations.

        The SFAS No. 157 framework requires fair value to be determined based on the exchange price that would be received forto sell an asset or paid to transfer a liability (an exit price) in the principal or most advantageous market for the asset or liability in an orderly transaction between market participants onat the measurement date. SFAS No. 157 establishes a fair value hierarchy which requires an entity toWe use valuation techniques that maximize the use of observable inputs and minimize the use of unobservable inputs when measuring



PONIARD PHARMACEUTICALS, INC. AND SUBSIDIARY

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 2. Fairdetermining fair value measurements (Continued)


and then we rank the estimated values based on the reliability of the inputs used following the fair value.value hierarchy set forth by the Financial Accounting Standards Board ("FASB"). The standard describes the following three levels of inputs that may be used to measurethe FASB fair value:value hierarchy are as follows:

        The determination of a financial instrument's level within the fair value hierarchy is based on an assessment of the lowest level of any input that is significant to the fair value measurement. The Company utilizes the market approach to measure fair value for its financial assets and liabilities. The market approach uses prices and other relevant information generated by market transactions involving identical or comparable assets or liabilities. The Company's investment securities, consisting of debt securities, are classified as available-for-sale. Unrealized holding gains or losses on these securities are included in other comprehensive income. Realized gains and losses and declines in value judged to be other-than-temporary (of which there have been none to date) on available-for-sale securities are included in interest income.

        The following table presents a summary of the Company's assets and liabilities at fair value on a recurring basis:

 
 Fair Value Measurements as of
September 30, 2008
 
 
 Total Level 1 Level 2 Level 3 
 
 (in thousands)
 

Cash equivalents

 $44,679 $44,679 $ $ 

Investment securities

  38,515    38,515   
          

Total

 $83,194 $44,679 $38,515 $ 
          

Table of Contents


PONIARD PHARMACEUTICALS, INC. AND SUBSIDIARY

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 2. Fair Value Measurements (Continued)

        The following table presents a summary of the Company's assets that are measured at fair value on a recurring basis (in thousands):

 
 Fair Value Measurements as of September 30, 2009 
 
 Total Level 1 Level 2 Level 3 

Cash equivalents

 $17,520 $16,216 $1,304 $ 

Investment securities

  21,074    21,074   
          

 $38,594 $16,216 $22,378 $ 
          

        As of September 30, 2009 and December 31, 2008, the Company's cash equivalents and investment securities are recorded at fair value as determined through market prices and other observable and corroborated sources. At September 30, 2009 the cash equivalents balance consists of $16,216,000 in money market funds and $1,304,000 of corporate debt securities purchased with a maturity date less than 90 days from the purchase date. Investment securities are comprised of corporate debt securities and federal government and agency securities (see Note 3 below for further details on investment securities).

        When the estimated fair value of a security is below its carrying value, the Company evaluates whether it is more likely than not that it will be required to sell the security before its anticipated recovery in market value and whether evidence indicating that the cost of the investment is recoverable within a reasonable period of time outweighs evidence to the contrary. The Company also evaluates whether or not it intends to sell the investment. If the impairment is considered to be other-than-temporary, the security is written down to its estimated fair value. In addition, the Company considers whether credit losses exist for any securities. A credit loss exists if the present value of cash flows expected to be collected is less than the amortized cost basis of the security. Other-than-temporary declines in estimated fair value and credit losses are charged to investment income. The Company has not deemed it necessary to record any charges related to impairments or other-than-temporary declines in the estimated fair values of its marketable debt securities or credit losses as of September 30, 2009.

Note 3. Investment Securities

        The Company's investment securities, consisting of debt securities, are classified as available-for-sale. Unrealized holding gains or losses on these securities are included in other comprehensive income (loss). Realized gains and losses and declines in value judged to be other-than-temporary (of which there have been none to date) on available-for-sale securities are included in interest income and other, net.


Table of Contents


PONIARD PHARMACEUTICALS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 3. Investment Securities (Continued)

        Investment securities consisted of the following at September 30, 2009 (in thousands):

 
  
 Gross Unrealized  
 
 
 Amortized
Cost
 Estimated
Fair Value
 
 
 Gains (Losses) 

Type of security:

             
 

Corporate debt securities, with unrealized gains

 $12,081 $15 $ $12,096 
 

Federal government and agency securities

  8,970  8    8,978 
          

 $21,051 $23 $ $21,074 
          
  

Net unrealized gain

    $23       
             

Maturity:

             
 

Less than one year

 $21,051       $21,074 
            

        Investment securities consisted of the following at December 31, 2008 (in thousands):

 
  
 Gross Unrealized  
 
 
 Amortized
Cost
 Estimated
Fair Value
 
 
 Gains (Losses) 

Type of security:

             
 

Corporate debt securities

 $39,107 $11 $(603)$38,515 
          
  

Net unrealized loss

       $(592)   
             

Maturity:

             
 

Less than one year

 $36,858       $36,694 
 

Due in 1–2 years

  2,249        1,821 
            

 $39,107       $38,515 
            

 
  
 Gross Unrealized  
 
 
 Amortized
Cost
 Estimated
Fair Value
 
 
 Gains (Losses) 

Type of security:

             
 

Corporate debt securities, with unrealized gains

 $10,706 $26 $ $10,732 
 

Corporate debt securities, with unrealized losses

  13,261    (382) 12,879 
 

Federal government and agency securities

  4,998  2    5,000 
          

 $28,965 $28 $(382)$28,611 
          
  

Net unrealized loss

       $(354)   
             

Maturity:

             
 

Less than one year

 $27,912       $27,561 
 

Due in 1-2 years

  1,053        1,050 
            

 $28,965       $28,611 
            

        AsTable of September 30, 2008, the Company held a debt security issued by American General Finance Corporation (AGFC), a wholly-owned subsidiary of American International Group, Inc. (AIG), with a par value of $1,200,000, coupon rate of 3.875%, amortized cost of approximately $1,194,000 and maturity date of October 1, 2009. The market value for this security as of September 30, 2008, based on Level 2 inputs as described in SFAS No. 157, was approximately $788,000, resulting in an unrealized loss of approximately $406,000. This unrealized loss was the result of a downgrade by S&P in September 2008, reducing the credit rating of AGFC, from A+ to BBB, in connection with the downgrade in its rating on AIG. On October 3, 2008, Moody's followed with a downgrade of AGFC's credit rating, from A3 to Baa1. The Company's management has concluded that the unrealized loss on the AGFC debt security, and the other debt securities that it holds, is temporary due to a) the relatively short duration of the decline in value of the investments; b) the assessment of the Company's management that it is probable that all contractual amounts under the debt securities will be received and c) the Company's intent and ability to hold the securities until at least substantially all of the cost is recovered.Contents


PONIARD PHARMACEUTICALS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 4. Bank loanAccrued Liabilities

        Accrued liabilities consist of the following (in thousands):

 
 September 30,
2009
 December 31,
2008
 

Clinical trials

 $5,671 $8,266 

Accrued expenses

  869  689 

Compensation

  1,307  1,164 

Severance

    285 

Other

  341  284 
      

 $8,188 $10,688 
      

Note 5. Note Payable

        On September 2, 2008, the Company entered into an Amended and Restated Loan and Security Agreement (loan agreement)("loan agreement"), with GE Business Financial Services Inc. (formerly known as Merrill Lynch Capital) and Silicon Valley Bank. The loan agreement amends and restates in its entirety the earlier Loan and Security Agreement dated as of October 25, 2006 (original loan)("original loan"), with Merrill Lynch Capital and Silicon Valley Bank, pursuant to which the Company obtained a $15,000,000 capital loan that was to mature on April 1, 2010.

        The loan agreement provides for a $27,600,000 senior secured term loan facility (loan facility)("loan facility") to be made available as follows: (i) an initial term loan advance in the amount of $17,600,000, which is comprised of (a) the outstanding principal balance of $7,600,000 remaining on the original loan and (b) an additional cash advance in the amount of $10,000,000 (cash portion)("cash portion"), which was fully funded on September 2, 2008; and (ii) a second term loan advance in the amount of $10,000,000, which was fully funded on September 30, 2008. The cash portion of the initial term loan advance and the proceeds of the second term loan advance will be used to fund the Company's clinical trials and for general



PONIARD PHARMACEUTICALS, INC. AND SUBSIDIARY

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 4. Bank loan (Continued)


corporate purposes. The advances under the loan facility are repayable over 42 months, commencing on October 1, 2008. Interest on the advances is fixed at 7.80% per annum. Final loan payments in the amounts of $1,070,000 and $900,000 are due upon maturity or earlier repayment of the initial term loan advance and the second term loan advance, respectively. Additionally, as a condition to the amendment and restatement of the original loan, the Company agreed to modification of the final payment obligations under the original loan, pursuant to which the Company paid $600,000 to Silicon Valley Bank on September 2, 2008, the effective date of the loan facility, and will pay $675,000 to GE Business Financial Services on the earlier of March 31, 2010 or the date of repayment of the loan facility. All final payment amounts will beare being accreted to the note payable balance over the term of the loan facility using the effective interest rate method and reflected as additional interest expense. All interest payable under the loan agreement and the full amount of the final payments must be paid upon any prepayment of a term loan advance. The loan facility is secured by a first lien on all of the non-intellectual property assets of the Company.

        In connection with the loan agreement, the Company issued to the lenders ten-year warrants to purchase an aggregate of 219,920 shares of the Company's common stock at an exercise price of $4.297 per share. The fair value of the warrants using the Black-Scholes option-pricing model was approximately $928,000 based upon assumptions of expected volatility of 90%, a contractual term of ten


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PONIARD PHARMACEUTICALS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 5. Note Payable (Continued)


years, an expected dividend rate of zero and a risk-free interest rate of 3.74%. The portion of the loan proceeds allocable to the warrants is approximately $806,000 based on the relative fair value of the warrants, which the Company recorded as additional discount to notes payable. The total of the final loan payments and the proceeds allocated to the warrants of approximately $4,051,000 will beare being amortized to interest expense using an effective interest rate of 13.8%. At September 30, 2009, the outstanding principal balance under the loan facility was $20,409,000, net of discount of $1,951,000.

        The loan agreement contains restrictions on the Company's ability to, among other things, dispose of certain assets, engage in certain mergers and acquisition transactions, incur indebtedness, create liens on assets, make investments, pay dividends and repurchase stock. The loan agreement also contains covenants requiring the Company to maintain unrestricted cash in an amount equal to the lesser of (i) $17,940,000 or (ii) the outstanding aggregate principal balance of the term loans plus $4,000,000. The loan agreement contains events of default that include nonpayment of principal, interest or fees, breaches of covenants, material adverse changes, bankruptcy and insolvency events, cross defaults to any other indebtedness, material judgments, inaccuracy of representations and warranties, and events constituting a change of control. The occurrence of an event of default would increase the applicable rate of interest by 5% and could result in the acceleration of the Company's payment obligations under the loan agreement. The Company was in compliance with all loan covenants as of September 30, 2009.

Note 6. Committed Equity Line of Credit

        On August, 19, 2009, the Company entered into an equity line of credit arrangement with Azimuth Opportunity Ltd. ("Azimuth") pursuant to a Common Stock Purchase Agreement ("Purchase Agreement"), which provides that, upon the terms and subject to the conditions set forth therein, Azimuth is committed to purchase up to $60 million worth of shares of the Company's common stock over the 18-month term of the Purchase Agreement. From time to time over the term of the Purchase Agreement, the Company may, at its sole discretion and upon presentation of a draw down notice, require Azimuth to purchase its common stock over ten consecutive trading days or such other period mutually agreed upon by the Company and Azimuth ("Draw Down Period"). Each draw down is subject to limitations based on the price of the Company's common stock and a limit of 2.5% of the Company's market capitalization at the time of the draw down. The Purchase Agreement requires a minimum price of $3.00 per share to allow the Company to issue shares to Azimuth. Under the Purchase Agreement, the Company may sell to Azimuth up to 6,955,606 shares of its common stock. The Company may present Azimuth with up to 24 draw down notices during the term of the Purchase Agreement with only one such draw down notice allowed per Draw Down Period and a minimum of five trading days required between each Draw Down Period. As of September 30, 2009, no shares have been sold under the Purchase Agreement.

Note 7. Restructuring and Asset Impairment

        Effective March 31, 2009, the Company implemented a strategic restructuring plan to refocus its cash resources on clinical and commercial development of picoplatin, resulting in the discontinuation of the Company's preclinical research operations and reducing its workforce by approximately 12%, or eight employees. The Company incurred severance charges totaling $296,000 related to the reduction in staff. All severance charges related to the restructuring have been paid as of September 30, 2009. The


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PONIARD PHARMACEUTICALS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 7. Restructuring and Asset Impairment (Continued)


Company incurred additional charges totaling approximately $172,000 related to the closure of its lab facilities in South San Francisco, California. Of this amount, $6,000 was incurred as share-based compensation expense, $12,000 was a write-off of prepaid expenses, and $154,000 was incurred for contract and other termination costs. As of September 30, 2009, $14,000 remained unpaid and is payable within one year.

        The following table summarizes the impact of the restructuring charges through September 30, 2009 (in thousands):

Description
 Initial
Restructuring
Charge
March 31, 2009
 Payment of
Restructuring
Obligations
 Accrued
Restructuring
Charge as of
September 30, 2009
 

Employee termination benefits

 $296 $(296)$ 
        

Contract termination costs

  125  (125)  

Other termination costs

  47  (33) 14 
        
 

Subtotal

  172  (158) 14 
        

Total

 $468 $(454)$14 
        

        In conjunction with the decision to discontinue the Company's preclinical research operations, the Company recognized an asset impairment loss of $588,000 on certain facilities and equipment related to the lab in South San Francisco, California. The loss on the assets was determined based on estimates of potential sales values of used equipment. These impairment charges established new cost bases for the impaired assets, which are included in assets held for sale and reported in the prepaid expenses and other current assets line on the accompanying Condensed Consolidated Balance Sheets.

        The following table summarizes information related to the impairment charges (in thousands):

 
 So. San Francisco
Lab Equipment &
Leasehold
Improvements
 

Impairment Loss

 $588 
    

Impaired Carrying Value Upon Restructuring (March 31, 2009)

 $57 

Disposals of Assets

  (50)
    

Post Impairment Carrying Value as of September 30, 2009

 $7 
    

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PONIARD PHARMACEUTICALS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 5.8. Picoplatin licenseLicense and amendmentAmendment

        The Company has entered into an exclusive worldwide license, as amended, with Genzyme Corporation (successor to AnorMED, Inc.) for the development and commercial sale of picoplatin. Under that license, the Company is solely responsible for the development and commercialization of picoplatin. Genzyme retains the right, at the Company's cost, to prosecute its patent applications and maintain all licensed patents. The parties executed the license agreement in April 2004, at which time the Company paid a one-time up-front payment of $1,000,000 in common stock and $1,000,000 in cash. The original agreement excluded Japan from the licensed territory and provided for $13,000,000 in



PONIARD PHARMACEUTICALS, INC. AND SUBSIDIARY

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 5. Picoplatin license and amendment (Continued)


development and commercialization milestones, payable in cash or a combination of cash and common stock, and a royalty rate of up to 15% on product net sales after regulatory approval. The parties amended the license agreement on September 18, 2006, modifying several key financial terms and expanding the licensed territory to include Japan, thereby providing the Company worldwide rights. In consideration of the amendment, the Company paid Genzyme $5,000,000 in cash on October 12, 2006 and an additional $5,000,000 in cash on March 30, 2007. The amendment eliminated all development milestone payments to Genzyme. Genzyme remains entitled to receive up to $5,000,000 in commercialization milestones upon the attainment of certain levels of annual net sales of picoplatin after regulatory approval. The amendment also reduced the royalty payable to Genzyme to a maximum of 9% of annual net product sales. In addition, the amendment reducedsales and eliminated the sharing of sublicense revenues with Genzyme on and after September 18, 2007.Genzyme.

        The Company accounted for all payments made in consideration of the picoplatin license, as amended, by capitalizing them as an intangible asset. The Company's capitalization of the total $12,000,000 of picoplatin license payments is based on the Company's reasonable expectation at the time of acquisition and through the date of the amendment that the intravenous formulation of picoplatin, as it existed at the time of the acquisition of the picoplatin license and the license amendment, would be used in research and development (R&D)("R&D") projects and therefore had alternative future uses in the treatment of different cancer indications. At the time of acquisition, the Company planned to use intravenous picoplatin in a Phase II clinical trial in patients with small cell lung cancer and reasonably expected that the intravenous formulation could be used in additional, currently identifiable R&D projects in the form of clinical trials for other solid tumor cancer indications, such as prostate and colorectal cancers.

        The Company, determined the original useful life of the picoplatin intangible asset in accordance with the requirements of FASB SFAS No. 142, "Goodwill and Other Assets." The Company, at the time of acquisition of the picoplatin license, reasonably anticipated using intravenous picoplatin in clinical trials that could be conducted during the remaining term of the primary patent, which is active through 2016. The Company concluded that the twelve years remaining for the primary patent term was the appropriate useful life for the picoplatin intangible asset, in satisfaction ofaccordance with the expected use and legal life provisions of SFAS No. 142,FASB's guidance for intangibles, and is amortizing the initial $2,000,000 license payment over this twelve year useful life beginning in April 2004. The Company concluded that no change in the twelve-year useful life of the picoplatin intangible asset occurred as a result of the 2006 license amendment and is, therefore, continuing to amortize the initial $2,000,000 license payment over the twelve year useful life and is amortizing the license amendment payment of $10,000,000 over the remainder of the twelve year useful life of the picoplatin intangible asset.

        Licensed Products consistsproducts consist of the picoplatin amortizable intangible asset with a gross amount of $12,000,000, and net of accumulated amortization of $2,890,000$4,104,000 and $1,979,000$3,193,000 at September 30, 20082009 and December 31, 2007,2008, respectively.


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PONIARD PHARMACEUTICALS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 6.9. Net loss per common shareLoss Per Common Share

        Basic and diluted loss per share are based on net loss applicable to common shares, which is comprised of net loss and preferred stock dividends in all periods presented. Shares used to calculate basic loss per share are based on the weighted average number of common shares outstanding during



PONIARD PHARMACEUTICALS, INC. AND SUBSIDIARY

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 6. Net loss per common share (Continued)


the period. Shares used to calculate diluted loss per share are based on the potential dilution that would occur upon the exercise or conversion of securities into common stock using the treasury stock method. The calculation of diluted loss per share excludes the effect of the following stock options and warrants to purchase additional shares of common stock because the share increments would not be dilutive.

 
 Three and Nine Months
Ended September 30,
 
 
 2008 2007 

Common stock options

  5,397,071  4,434,039 

Common stock warrants

  6,165,129  5,946,876 

 
 Three Months Ended
September 30,
 Nine Months Ended
September 30,
 
 
 2009 2008 2009 2008 

Common stock options

  5,722,570  5,397,071  5,722,570  5,397,071 

Performance-based restricted stock units

  514,668    514,668   

Common stock warrants

  5,496,651  6,165,129  5,496,651  6,165,129 

        In addition, 39,015 shares of common stock that would be issuable upon conversion of the Company's Series 1 preferred stock are not included in the calculation of diluted loss per share for the periods ended September 30, 20082009 and 2007,2008, respectively, because the effect of including such shares would not be dilutive.

Note 7.10. Stock-based compensationCompensation

        A summary of the fully vested stock options is presented below (shares and aggregate intrinsic value in thousands):

 
 Number of
Shares
 Weighted Average
Exercise Price
 Weighted Average
Remaining
Contractual Term
(Years)
 Aggregate
Intrinsic Value
 

Exercisable at September 30, 2008

  2,247 $7.97  7.4 $351 

 
 Number of
Shares
 Weighted
Average
Exercise
Price
 Weighted Average
Remaining
Contractual Term
in Years
 Aggregate
Intrinsic
Value
 

Options exercisable at September 30, 2009

  3,232 $7.10  6.6 $5,377 

        The Company recorded the following amounts of stock-based compensation expense, not including expense for options granted to non-employee consultants, for the periods presented (in thousands):

 
 Three Months
Ended
September 30,
 Nine Months
Ended
September 30,
 
 
 2008 2007 2008 2007 

Research and development expense

 $387 $223 $1,192 $857 

General and administrative expense

  1,140  929  4,327  2,623 
          
 

Total

 $1,527 $1,152 $5,519 $3,480 
          

 
 Three Months Ended
September 30,
 Nine Months Ended
September 30,
 
 
 2009 2008 2009 2008 

Research and development expense

 $493 $387 $1,097 $1,192 

General and administrative expense

  1,113  1,140  3,228  4,327 
          
 

Total

 $1,606 $1,527 $4,325 $5,519 
          

        The amountscompensation expense for the three and nine months ended September 30, 2008 includeincludes the grant of stock options duringin the first quarter of 2008 to Company officers to purchase an aggregate of 460,000 shares of


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PONIARD PHARMACEUTICALS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 10. Stock-based Compensation (Continued)


common stock. Certain options that were granted to officers of the Company during 2006 and 2007 vest 50% in equal monthly installments over four years from the date of grant and vest 50% on the seven-year anniversary of the date of grant, subject to accelerated vesting of up to 25% of such portion of the option, to the extent ofoptions, based on the Company's achievement of annual performance goals established under its annualmanagement incentive plan, at the discretion of the equity awards subcommittee of the Company's



PONIARD PHARMACEUTICALS, INC. AND SUBSIDIARY

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 7. Stock-based compensation (Continued)


committee of the Company's board of directors. Based on the overall achievement of corporate goals in 2006 and 2007 the equity awards subcommittee accelerated vesting with respect to 20% of the shares subject to the seven-year vesting schedule in both the second quarter of 2007 and the first quarter of 2008, resulting in2008. As of September 30, 2009, the cumulative accelerated vesting of 40%equals 60% of the shares subject to the seven-year vesting as of September 30, 2008.

        No income tax benefit has been recorded for stock option exercises as the Company has a full valuation allowance and management has concluded it is more likely than not that the net deferred tax asset will not be realized. As of September 30, 2008, total unrecognized compensation costs related to stock options was $14,361,000, which is expected to be recognized over a weighted average period of approximately three years.schedule.

        Estimated fair values of stock options granted have been determined using the Black-Scholes option pricing model with the following assumptions for the periods presented:

 
 Three Months
Ended
September 30,
 Nine Months
Ended
September 30,
 
 
 2008 2007 2008 2007 

Expected term (in years)

  3.99  6.08  4.87  6.42 

Risk-free interest rate

  2.95% 4.62% 3.05% 5.15%

Expected stock price volatility

  90% 93% 90% 102%

Expected dividend rate

  0% 0% 0% 0%

 
 Three Months Ended
September 30,
 Nine Months Ended
September 30,
 
 
 2009 2008 2009 2008 

Expected term (in years)

  2.3  4.0  5.8  4.9 

Risk-free interest rate

  1.19% 2.95% 2.30% 3.05%

Expected stock price volatility

  95% 90% 95% 90%

Expected dividend rate

  0% 0% 0% 0%

        During 2008 the Company awarded 92,000 restricted stock units ("RSUs") under the 2004 Incentive Compensation Plan, as amended and restated (the "2004 Plan"), to non-officer employees as an incentive for future performance. An additional 4,000 RSUs were awarded in 2009 for this incentive program. Upon vesting, each RSU is payable with one share of the Company's common stock. The average fair value of the RSUs was $3.13 per unit, or approximately $299,000 in total, based upon the closing market price of the Company's common stock on the award dates. The RSUs vest based on the achievement of certain performance milestones during 2009 and 2010. As of September 30, 2009, the first two performance milestones were achieved and therefore 40% of the shares have vested and been released. The third performance milestone, if achieved no later than June 30, 2010, would result in the vesting of the remaining 60% upon the date of achievement. As of September 30, 2009, the Company determined that the third milestone is probable of being achieved and is therefore recognizing the related stock-based compensation expense on a pro-rata basis through the estimated date of achievement.

        On July 23, 2009 the Company awarded an additional 290,400 RSUs under the 2004 Plan to non-officer employees as an incentive for future performance. The fair value of the RSUs was $7.34 per unit, or approximately $2,132,000 in total, based upon the closing market price of the Company's common stock on the award date. The RSUs vest based on the achievement of certain performance milestones during 2010. As of September 30, 2009, the Company determined that milestones are probable of being achieved and is therefore recognizing the related stock-based compensation expense on a pro-rata basis through the estimated dates of achievement.

        On July 11, 2009, a Company director, was awarded 170,000 RSUs as compensation for consulting services. The RSUs vest 50% on each of the first two anniversaries of the grant and is subject to 100% acceleration upon the achievement of a performance milestone. The fair value of the award is


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PONIARD PHARMACEUTICALS, INC.

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 10. Stock-based Compensation (Continued)


approximately $1,272,000 at September 30, 2009, and will be re-measured at each reporting date because it is a non-employee award. As of September 30, 2009, the Company determined that the performance milestone is probable of being achieved in 2010 and is thus recognizing stock compensation for the fair value of the award on a pro-rata basis through the estimated date of achievement.

        No income tax benefit has been recorded for stock-based compensation expense as the Company has a full valuation allowance and management has concluded it is more likely than not that the Company's net deferred tax assets will not be realized. As of September 30, 2009, total unrecognized costs related to employee stock-based compensation was $11,074,000, which is expected to be recognized over a weighted average period of approximately 2.3 years.

Note 8.11. Comprehensive lossLoss

        The Company's comprehensive loss for the three and nine months ended September 30, 2009 and 2008 is summarized as follows (dollars in(in thousands):

 
 Three Months
Ended
September 30,
 Nine Months
Ended
September 30,
 
 
 2008 2007 2008 2007 

Net loss

 $12,237 $6,959 $34,623 $23,216 

Net unrealized (gain) loss on investment securities

  531  (60) 651  (52)
          

Comprehensive loss

 $12,768 $6,899 $35,274 $23,164 
          

 
 Three Months Ended
September 30,
 Nine Months Ended
September 30,
 
 
 2009 2008 2009 2008 

Net loss

 $9,877 $12,237 $32,547 $34,623 

Net unrealized (gain) loss on investment securities

  (39) 531  (377) 651 
          

Comprehensive loss

 $9,838 $12,768 $32,170 $35,274 
          

Note 9.12. Recent accounting pronouncementsAccounting Pronouncements

        In September 2006,June 2009, the FinancialFASB established the FASB Accounting Standards Board (FASB)Codification ("FASB ASC") as the source of authoritative accounting principles recognized by the FASB. The FASB will issue new standards in the form of Accounting Standards Updates ("ASUs"). FASB ASC is effective for financial statements issued SFAS No. 157,for interim and annual periods ending after September 15, 2009 and therefore is effective for the Company in the third quarter of 2009. The issuance of FASB ASC does not change accounting principles generally accepted in the United States and therefore the adoption of FASB ASC only affects the specific references to accounting literature in the notes to the Company's consolidated financial statements.

        In August 2009, the FASB issued ASU 2009-05, "Fair Value Measurements and Disclosures (Topic 820)—Measuring Liabilities at Fair Value" ("ASU 2009-05," currently within the scope of ASC Subtopic 820-10). ASU 2009-05 provides clarification regarding valuation techniques when a quoted price in an active market for all financial instrumentsan identical liability is not available in addition to treatment of the existence of restrictions that prevent the transfer of a liability. The ASU also clarifies that both a quoted price in an active market for an identical liability at the measurement date and non-financial instruments accountedthe quoted price for at fair value on a recurring basis. SFAS No. 157 introduces a framework for measuring fair value and expands disclosure requirements aboutan identical liability when traded as an asset in an active market (when no adjustments to the quoted price of the asset are required) are Level 1 fair value measurements. SFAS No. 157 applies to other accounting pronouncements that require or permit fair value measurements, but does not in itself require any new fair value measurements. SFAS No. 157 for financial assets and liabilitiesThe ASU is effective for fiscal yearsthe first reporting


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PONIARD PHARMACEUTICALS, INC. AND SUBSIDIARY

NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Continued)

(Unaudited)

Note 9.12. Recent accounting pronouncementsAccounting Pronouncements (Continued)


period, including interim periods, beginning after November 15, 2007. The Company adoptedissuance. Adoption of ASU 2009-05 did not have a material effect on the standard for those assets and liabilities as of January 1, 2008 with no material impact on itsCompany's condensed consolidated financial statements.

        In March 2008, the FASB issued SFAS No. 161, "Disclosures about Derivative InstrumentsNote 13. Commitments and Hedging Activities." SFAS No. 161 requires companies with derivative instruments to disclose information that should enable financial statement users to understand how and why a company uses derivative instruments, how derivative instruments and related hedged items are accounted for under SFAS No. 133, "Accounting for Derivative Instruments and Hedging Activities," and how derivative instruments and related hedged items affect a company's financial position, financial performance and cash flows. SFAS No. 161 is effective for financial statements issued for fiscal years beginning after December 15, 2008, and interim periods within those fiscal years.Contingencies

        The Company is currently evaluatingentered into a picoplatin active pharmaceutical ingredient ("API") commercial supply agreement with W.C. Heraeus ("Heraeus") in March 2008. Under this statementagreement Heraeus will produce picoplatin API to be used for preparing picoplatin finished drug product for commercial use. Manufacturing services are provided on a purchase order, fixed-fee basis, subject to certain purchase price adjustments and its impact, if any,minimum quantity requirements. The costs to Heraeus for the purchase and set-up of dedicated equipment as required under the commercial supply agreement, estimated to be approximately $1,800,000 (including interest charges of approximately $336,000) will be repaid by the Company in the form of a surcharge on the Company's consolidated financial statements.

        In April 2008, the FASB issued FASB Staff Position (FSP) FAS 142-3, "Determinationan agreed upon amount of the Useful Lifepicoplatin API ordered and delivered on or before December 31, 2013. If the Company orders and takes delivery of Intangible Assets." This FSP amendsless than the factors that shouldagreed upon amount of picoplatin API through December 31, 2013, it will be considered in developing renewal or extension assumptions usedobligated to determinepay the useful life of a recognized intangible asset under SFAS No. 142, "Goodwill and Other Intangible Assets." The intent of this FSP is to improve the consistency between the useful life of a recognized intangible asset under SFAS No. 142 and the period of expected cash flows used to measure the fair valuebalance of the asset under SFAS No. 141R, and other GAAP. FSP FAS 142-3 is effective for financial statements issued for fiscal years beginning after December 15, 2008, and interim periods within those fiscal years. Early adoption is prohibited. The Company is currently evaluating this statement and its impact, if any, ondedicated equipment cost as of that date. As of September 30, 2009, Heraeus had completed partial construction of the Company's consolidated financial statements.

        In December 2007, the FASB issued SFAS No. 141R (revised 2007), "Business Combinations," which replaces SFAS No. 141. The statement retains the purchase methoddedicated equipment at a cost of accounting for acquisitions, but requires a number of changes, including changes in the way assets and liabilities are recognized in the accounting for a purchase. It also changes the recognition of assets acquired and liabilities assumed arising from contingencies, requires the capitalization of in-process research and development at fair value, and requires the expensing of acquisition-related costs as incurred. SFAS No. 141R is effective for acquisitions occurring in fiscal years beginning after December 15, 2008. Whileapproximately $1,722,000 (including interest). Because the Company is currently evaluatingnot under a present obligation to pay this statementamount and its impact, ifthe agreement is not under any potential circumstance of default or termination, it is not probable that a financial liability exists for this amount as of September 30, 2009 and therefore no such liability was recorded on the Company'scondensed consolidated financial statements, it believesbalance sheet as of that date. The Company anticipates that the adoption of SFAS No. 141R would have an impact on the accounting for any future acquisition, if one were to occur.

        In June 2007, the FASB ratified the EITF consensus on EITF Issue No. 07-3, "Accounting for Nonrefundable Advance Payments for Goods or Services Received for Use in Future Research and Development Activities." EITF Issue No. 07-3 requires that nonrefundable advance payments for goods or services thatdedicated equipment will be used or renderedready for future researchuse during the fourth quarter of 2009, after which it expects to account for the equipment and development activities should be deferred and capitalized. Such amounts should be recognizedrelated surcharge payments as an expense as the related goods are delivered or the related services are performed. Entities should continue to evaluate whether they expect the goods to be delivered or services to be rendered. If an entity does not expect the goods to be delivered or services to be rendered, the capitalized advance payment should be charged to expense. The Company adopted EITF Issue No. 07-3 on January 1, 2008, resulting in the temporary deferral of costs incurred for research and development activities from the time payouts are made until the time goods or services are provided.a capital lease.


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Item 2.    Management's Discussion and Analysis of Financial Condition and Results of Operations

Important Information Regarding Forward-Looking Statements

        This Form 10-Q contains forward-looking statements within the meaning of the Private Securities Litigation Reform Act of 1995. These statements relate to future events or future financial performance and are subject to change based on various important factors, many of which are beyond our control. In some cases, you can identify forward-looking statements by terminology such as "currently," "may," "will," "should," "expect," "plan," "intend," "anticipate," "believe," "target," "estimate," "predict," "potential," "propose" or "continue," the negative of these terms or other terminology. These statements reflect our current views with respect to future events and are only predictions. Actual events or results may differ materially.based on assumptions and are subject to risks and uncertainties that are difficult to predict. In evaluating these statements, you should specifically consider various factors described below in the section entitled "Risk Factors." These and other factors may cause our actual results to differ materially from any forward-looking statements contained in this report or otherwise made by us.

        Although we believe the expectations reflected in the forward-looking statements are reasonable, we cannot guarantee future results, levels of activity, performance or achievements. You should not place undue reliance on our forward-looking statements, which speak only as of the date of this report. We undertake no obligation to update publicly any forward-looking statements to reflect new information, events or circumstances after the date of this report, or to reflect the occurrence of unanticipated events.

Critical Accounting Policies and Estimates

        Our critical accounting policies and estimates have not materially changed except for our accounting for the fair value measurements of financial assets and liabilities, from those reported in our Annual Report on Form 10-K for the year ended December 31, 20072008 filed with the SEC on March 13, 2008.16, 2009. For a more complete description, please refer to our Annual Report on Form 10-K. Refer to Note 9, Fair Value Measurements, included in this Form 10-Q for the three and nine months ended September 30, 2008, for a more complete discussion of our accounting for the fair value measurements of our financial assets and liabilities and the related disclosures.

Results of Operations

Three and Nine Months Ended September 30, 20082009 Compared to the Three and Nine Months Ended September 30, 20072008

        We had no revenue for the three and nine months ended September 30, 2008 and 2007, respectively.

        Total operating expenses for the third quarter of 2008 increased 58% to $12.4 million, from $7.9 million for the third quarter of 2007, and increased 44% to $35.8 million for the nine months ended September 30, 2008, from $24.9 million for the same period in 2007.

        Research and development (R&D) expenses increased 79% to $9.0 million for the third quarter of 2008, from $5.1 million for the third quarter of 2007. R&D expenses increased 50% to $24.5 million for the nine months ended September 30, 2008, from $16.4 million for the same period in 2007. The increase in R&D expenses for the three and nine months ended September 30, 2008 resulted primarily from increased costs associated with our picoplatin clinical trials and pre-clinical programs.

        General and administrative (G&A) expenses increased 21% to $3.4 million for the third quarter of 2008, from $2.8 million for the third quarter of 2007. G&A expenses increased 32% to $11.3 million for the nine months ended September 30, 2008, from $8.6 million for the same period in 2007. The increases in G&A expenses for the three months ended September 30, 2008 are due primarily to higher stock-based compensation expense, higher costs for consultants and increased legal costs. The increases



in G&A expenses for the nine months ended September 30, 2008 are due primarily to higher stock-based compensation expense and increased personnel costs.

        Cash, cash equivalents and investment securities as of September 30, 2008 were $84.0 million, compared with $92.6 million at December 31, 2007. During September 2008, we received approximately $20.0 million in net proceeds from our amended and restated bank term loan facility. On April 30, 2007, we received approximately $70.0 million in net proceeds from a public offering of 11.8 million shares of our common stock. We are using these proceeds for the continued clinical development of picoplatin, including funding our ongoing clinical trials in small cell lung cancer, advanced colorectal cancer and hormone-refractory prostate cancer, for discovery and research for new product candidates, and for general corporate purposes, including working capital. We believe that our current cash and cash equivalent balances will provide adequate resources to fund operations at least through the first quarter of 2010.

        As discussed below, we currently are conducting multiple ongoing clinical studies of picoplatin and, in April 2007, treated our first patient in our Phase III pivotal clinical study in small cell lung cancer. These clinical studies, as well as increases in personnel, initiation of internal research programs and plans for continued future growth, are expected to result in significant increases in our operating costs, including research and development and administrative expenses. We will require substantial additional funding to support our picoplatin and other proposed clinical development programs and to fund our operations. In the event that we do not obtain sufficient additional funds, we may be required to delay, reduce or curtail the scope of our picoplatin and other product development activities.

Major Research and Development Programs

        Our major research and development program is picoplatin, a new generation platinum-based chemotherapeutic designed to overcome platinum resistance in the treatment of solid tumors. We completed patient enrollment in our Phase II clinical study of picoplatin in small cell lung cancer in August 2006 and, based on positive interim median overall survival data from that ongoing study, we initiated a Phase III pivotal clinical trial of picoplatin in small cell lung cancer in April 2007. We completed enrollment in our Phase III trial in March 2009. In September 2009, we announced that 320 evaluable events (patient deaths) have occurred in our Phase III trial, enabling us to begin final analysis of data. We currently anticipate completing and reporting results of our preliminary analysis in November 2009 and, if positive, initiating a rolling submission of a new drug application ("NDA") with the U.S. Food and Drug Administration ("FDA") by year-end.

In May 2006, we treated our first patients in separatetwo Phase I/II clinical studies evaluating picoplatin as a first-line treatment ofof: (1) advanced colorectal cancer and hormone-refractory(2) castration-resistant (or hormone-refractory) prostate cancer. We initiated the Phase II component of our prostate cancer study in July 2007 and completed enrollment in December 2007. We initiated enrollment in the Phase II component of our colorectal cancer study in November 2007 and completed enrollment in May 2008. In AprilWe initiated the Phase II component of our prostate cancer study in July 2007 we initiatedand completed enrollment in December 2007. We also have completed a Phase I study of an oral formulation of picoplatin in advanced solid tumors.


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        Research and development expenses decreased 40% to $5.4 million from $9.0 million during the third quarter of 2009 and decreased 22% to $19.2 million from $24.5 million in the nine months ended September 30, 2009 compared to the comparable periods in 2008. Our research and development expenses are summarized as follows:

 
 Three Months Ended
September 30,
 Nine Months Ended
September 30,
 
 
 2009 2008 % Change 2009 2008 % Change 
 
 ($ in thousands)
  
 ($ in thousands)
  
 

Research

 $ $1,043  (100)%$764 $2,614  (71)%

Contract manufacturing

  717  1,149  (38)% 2,524  3,270  (23)%

Clinical

  4,155  6,360  (35)% 14,672  17,338  (15)%

Share-based compensation

  524  472  11% 1,193  1,289  (7)%
                
 

Total

 $5,396 $9,024  (40)%$19,153 $24,511  (22)%
                

        Research and development expenses decreased significantly during the third quarter of 2009 from the comparable period in 2008 as a result of our picoplatin trials entering their final stages. We did not incur any research expenses during the third quarter of 2009 due to our strategic restructuring implemented effective March 31, 2009. Contract manufacturing costs decreased 38% to $0.7 million in the third quarter of 2009 and decreased 23% to $2.5 million in the first nine months of 2009 from the comparable periods in 2008. These decreases reflect reduced clinical drug production activity resulting from our trials nearing completion. Clinical costs decreased 35% to $4.2 million in the third quarter of 2009 and decreased 15% to $14.7 million in the first nine months of 2009 from the comparable periods in 2008. These decreases reflect reduced clinical activity in connection with our current picoplatin studies, all of which are fully enrolled and two of which are in a follow-up or extended follow-up stage. Share-based compensation expense increased 11% to $0.5 million in the third quarter of 2009 from the comparable period in 2008, due primarily to an employee incentive program introduced during the third quarter of 2009. Share-based compensation expense decreased 7% to $1.2 million for the nine months ended September 30, 2009 from the comparable period in 2008, primarily due to the effects of the acceleration of vesting of certain stock options in the first quarter of 2008.

        The following table shows expenses incurred for preclinical study support, contract manufacturing for clinical supplies and clinical trial services provided by third parties, as well as other associated costs for our picoplatin product candidate. The table also presents unallocated costs which consist of facilities, consulting fees, patent costs and other costs not directly allocable to development programs:

 
 Three Months Ended
September 30,
 Nine Months Ended
September 30,
 
 
 2009 2008 % Change 2009 2008 % Change 
 
 ($ in thousands)
  
 ($ in thousands)
  
 

Picoplatin

 $3,741 $6,538  (43)%$14,286 $17,377  (18)%

Other unallocated costs and overhead

  1,131  2,014  (44)% 3,674  5,845  (37)%

Share-based compensation

  524  472  11% 1,193  1,289  (7)%
                
 

Total research and development costs

 $5,396 $9,024  (40)%$19,153 $24,511  (22)%
                

        Our external costs for picoplatin for the three and nine month periods ended September 30, 2009 and for the comparable periods in 2008, reflect costs associated with our various picoplatin clinical studies and the manufacture of drug product to support our clinical trials. We expect our external costs for picoplatin to increase slightly during the balance of 2009, compared to early 2009, as we prepare for submission of our rolling NDA, offset by lower costs for clinical trials upon completion of our Phase III pivotal trial of picoplatin in small cell lung cancer.


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        As of September 30, 2008,2009, we have incurred external costs of approximately $47.0$68.6 million in connection with our entire picoplatin clinical program. Total estimated future costs of our picoplatin Phase II and Phase III clinical trialstrial in small cell lung cancer areis in the rangesrange of $0.1$20.0 million to $0.3$25.0 million and $33.0 million to $39.0 million, respectively, through 2009,2010, including the cost of drug supply. Total estimated future costs of our picoplatin Phase II clinical trial in colorectal cancer and our Phase II clinical trial in hormone-refractorycastration-resistant prostate cancer are in the ranges of $3.5 million to $4.0 million to $6.0 million and $1.8$1.0 million to $2.5$1.5 million, respectively, through 2009,2010, including the cost of drug supply. Total remaining estimated future costs of our Phase I clinical trial inof an oral formulation of picoplatin are in the range of $0.2 million$50,000 to $0.5 million$100,000 through 2009, including the cost of drug supply.2010. These costs could be substantially higher if we have to repeat, revise or expand the scope of any of our clinical trials. Material cash inflows relating to our picoplatin development will not commence unless and until we complete required clinical trials and obtain U.S. Food and Drug Administration, or FDA and foreign regulatory agency marketing approvals, and then only if picoplatin finds acceptance in the marketplace. To date, we have not received any revenues from product sales of picoplatin.


        The risks and uncertainties associated with completing the development of picoplatin on schedule, or at all, include the following, as well as the other risks and uncertainties described in this report and in our Annual Report on Form 10-K for the year ended December 31, 2007:2008:

        If we fail to obtain marketing approvals for picoplatin, are unable to secure adequate clinical and commercial supplies of picoplatin APIactive pharmaceutical ingredient and finished drug product, or do not complete development and obtain United States and foreign regulatory agency approvals on a timely basis, our operations, financial position and liquidity could be severely impaired, including as follows:

        Because of the many risks and uncertainties relating to completion of clinical trials, receipt of marketing approvals and acceptance in the marketplace, we cannot predict the period in which material cash inflows from our picoplatin program will commence, if ever.

         SummaryGeneral and Administrative

 
 Three Months Ended
September 30,
 Nine Months Ended
September 30,
 
 
 2009 2008 % Change 2009 2008 % Change 
 
 ($ in thousands)
  
 ($ in thousands)
  
 

General and administrative

 $2,398 $2,245  7%$6,802 $6,964  (2)%

Share-based compensation

  1,404  1,138  23% 3,519  4,325  (19)%
                
 

Total

 $3,802 $3,383  12%$10,321 $11,289  (9)%
                

        The increase in general and administrative expense of Research7% to $2.4 million for the third quarter of 2009, is due primarily to higher compensation costs and, Development Costs.for the nine months ended September 30, 2009, the decrease of 2% to $6.8 million is due primarily to lower consulting costs. Share-based compensation expense included in general and administrative expenses increased 23% to $1.4 million


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for the third quarter of 2009, over the comparable period of 2008, due primarily to the effects of restricted stock units awarded during the third quarter of 2009 to non-officer employees and a consultant. Share-based compensation expense decreased 19% to $3.5 million for the first nine months of 2009 from the comparable period in 2008 primarily due to the effects of the acceleration of vesting of certain stock options in the first quarter of 2008.

Restructuring and Asset Impairment Loss    Our

        Effective March 31, 2009, we implemented a strategic restructuring plan to refocus our cash resources on clinical and commercial development administration overhead costs,of picoplatin, resulting in the discontinuation of our preclinical research operations and reducing our workforce by approximately 12%, or eight employees. This restructuring resulted in charges of $0.5 million in the first quarter of 2009 consisting of rent, utilities, consulting fees, patent costs$0.3 million in severance charges and $0.2 million in other various overhead costs,expenses related to the closure of our lab facilities in South San Francisco, California.

        In conjunction with the decision to discontinue our preclinical research operations, we also recognized an asset impairment loss of $0.6 million on certain facilities and equipment related to the lab in South San Francisco, California. The loss on the assets was determined based on estimates of potential sales values of used equipment. These impairment charges established new cost bases for the impaired assets, which are included in total researchassets held for sale and development expense for each period, but are not allocated among our various projects. Our total researchreported in the prepaid expenses and development costs includeother assets line on the costs of various research efforts directed toward the identificationaccompanying Condensed Consolidated Balance Sheets.

Other Income and evaluation of future product candidates. These other research projects are preclinical and not considered major projects. Our total research and development costs are summarized below:


Summary of Research and Development Costs
Expense

 
 Three Months Ended
September 30,
 Nine Months Ended
September 30,
 
 
 2008 2007 2008 2007 
 
 (in thousands)
 (in thousands)
 

Picoplatin

 $6,773 $2,972 $17,860 $10,602 

Discontinued programs

    12    123 

Other overhead and research costs

  2,251  2,066  6,651  5,637 
          

Total research and development costs

 $9,024 $5,050 $24,511 $16,362 
          

 
 Three Months Ended
September 30,
 Nine Months Ended
September 30,
 
 
 2009 2008 % Change 2009 2008 % Change 
 
 ($ in thousands)
  
 ($ in thousands)
  
 

Interest expense

 $(750)$(329) 128%$(2,413)$(1,021) 136%

Interest income and other, net

  71  499  (86)% 396  2,198  (82)%
                
 

Total

 $(679)$170  (499)%$(2,017)$1,177  (271)%
                

        Interest expense increased 128% and 136% for the three and nine months ended September 30, 2009 to $0.8 million and $2.4 million, respectively, from the comparable periods in 2008. The increase was primarily due to increased interest costs resulting from additional borrowings in September 2008 under our loan facility. Interest income and other, net decreased 86% to $0.1 million during the third quarter of 2009 and decreased 82% to $0.4 million for the first nine months of 2009 from the comparable periods in 2008. The decreases were primarily due to lower average yields from our investment securities portfolio.

Liquidity and Capital Resources

 
 September 30,
2009
 December 31,
2008
 
 
 ($ in thousands)
 

Cash, cash equivalents and

 $40,114 $72,755 
 

investment securities

       

Working capital

  23,739  54,835 

Shareholders' equity

  20,218  47,647 

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 Nine Months Ended
September 30,
 
 
 2009 2008 
 
 ($ in thousands)
 

Cash provided by (used in):

       
 

Operating activities

 $(27,009)$(24,239)
 

Investing activities

  7,668  24,168 
 

Financing activities

  (5,763) 16,263 

        We have historically experienced recurring operating losses and negative cash flows from operations. Cash, cash equivalents and investment securities, net of restricted cash of $0.3 million, totaled $40.1 million at September 30, 2009 compared to $72.8 million at December 31, 2008. As of September 30, 2008,2009, we had net working capital of $68.5$23.7 million, an accumulated deficit total of $348.5$394.9 million, and total shareholders' equity of $60.0$20.2 million.

        We have financed our operations to date primarily through the sale of equity securities, debt instruments, technology licensing and collaborative agreements and debt instruments.agreements. We invest excess cash in investment securities



that will be used to fund future operating costs. Cash used for operating activities for the nine months ended September 30, 20082009 totaled $24.4$27.0 million. There were no revenues or other income sources for the quarter ended September 30, 2008. Cash, cash equivalents and investment securities, net of restricted cash of $0.3 million, totaled $84.0 million at September 30, 2008 compared to $92.6 million at December 31, 2007. We believe that our current cash, cash equivalents and investment securities will provide adequate resources to fund operations at least through the first quarter of 2010.

        On September 2, 2008, we entered into an amended and restated loan and security agreement (loan agreement)("loan agreement") with GE BusinessHealthcare Financial Services Inc. (formerly known as Merrill Lynch Capital) and Silicon Valley Bank, establishing a $27.6 million senior secured loan facility. The loan agreement amends and restates our earlier loan and security agreement with Silicon Valley Bank and Merrill Lynch Capital dated as of October 25, 2006, pursuant to which we obtained a $15.0 million capital loan that was to mature on April 1, 2010 (original loan)("original loan"). Funds under the loan facility were made available as follows: (i) an initial term loan advance in the amount of $17.6 million, which was comprised of (a) the outstanding principal balance of $7.6 million remaining on the original loan and (b) an additional cash advance in the amount of approximately $10.0 million, which was fully funded on September 2, 2008; and (ii) a second term loan advance in the amount of $10.0 million, which was fully funded on September 30, 2008. The advances under the loan facility are repayable over 42 months, commencing on October 1, 2008. Interest on the advances is fixed at 7.80% per annum. Final payments in the amounts of $1.1 million and $0.9 million are due upon maturity or earlier repayment of the initial term loan advance and the second term loan advance, respectively. Additionally, as a condition to the amendment and restatement of the original loan, we agreed to modification of the final payment obligations under the original loan pursuant to which we paid $0.6 million to Silicon Valley Bank on September 2, 2008, the effective date of the loan facility, and will pay $0.7 million to GE BusinessHealthcare Financial Services on the earlier of March 31, 2010 or the date of repayment of the loan facility. The loan facility is secured by a first lien on all of our non-intellectual property assets. In connection with the loan agreement, we issued to the lenders ten-year warrants to purchase an aggregate of 219,920 shares of common stock at an exercise price of $4.297 per share. At September 30, 2009, the net loan balance under the loan facility was $20.4 million.

        The loan agreement contains restrictions on our ability to, among other things, dispose of certain assets, engage in certain mergers and acquisition transactions, incur indebtedness, create liens on assets, make investments, pay dividends and repurchase stock. The loan agreement also contains covenants requiring us to maintain a minimum amount of unrestricted cash in an amountduring the term of the loan equal to the lesser of (i) $17.94$17.9 million or (ii) the outstanding aggregate principal balance of the term loans plus $4.0 million. The loan agreement contains events of default that include nonpayment of principal, interest or fees, breaches of covenants, material adverse changes, bankruptcy and insolvency events, cross defaults to any other indebtedness, material judgments, inaccuracy of representations and warranties and events constituting a change of control. The occurrence of an event of default would increase the applicable rate of interest by 5% and could result in the acceleration of our payment


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obligations under the loan agreement. In connectionWe were in compliance with all loan covenants as of September 30, 2009.

        Taking into account the minimum unrestricted cash requirement under the loan agreement and our projected operating results, we issuedbelieve that our current cash, cash equivalent and investment securities balances will provide adequate resources to fund operations at least into the lenders ten-year warrants to purchasefirst quarter of 2010. However, given the uncertainties of outcomes of our clinical trials, there is no assurance that we can achieve our projected operating results. Thereafter, unless we raise additional funds, we will be in default of the minimum unrestricted cash requirement and potentially other provisions of the loan agreement. The occurrence of an aggregateevent of 219,920 sharesdefault would increase the applicable rate of common stock at an exercise priceinterest by 5% and could result in the acceleration of $4.297 per share. At September 30, 2008, the outstanding principal amountour payment obligations under the loan facility was $26.9 million.agreement. We intend to use the term loan advances to fund our clinical trials and for general corporate purposes.

        On April 30, 2007, we completed a public offering of 11.8 million shares of our common stock at a price of $6.33 per share. Net proceedshave no assurance that, especially in light of the public offering were $70.0 million. On April 26, 2006, we completed an equity financing, pursuantcurrent distressed economic environment, the lenders will be willing to which we issuedwaive or renegotiate the terms of the loan agreement to a group of institutional andaddress or avoid financial or other accredited investors an aggregate of 15.5 million shares of common stock at a cash purchase price of $4.20 per share. Investors in the 2006 equity financing also received five-year warrants to purchase an aggregate of 4.6 million shares of common stock at an exercise price of $4.62 per share. We received $62.0 million in net proceeds from the 2006 equity financing, which, along with the net proceeds received from our April 2007 public offering, we intend to use to fund the continued clinical and preclinical development of picoplatin, including funding our ongoing clinical trials and for general corporate purposes, including working capital.defaults.


        During the first nine months of 2008,ended September 30, 2009, we paid total rent (base rent and additional rent based on our share of facility common operating expenses) of $1.1 million under the operating leases for our South San Francisco headquarters facility and our Seattle facility. Of this amount, $0.9 million represents total aggregate minimum lease payments under these leases.

        On March 28, 2008,We have entered into clinical supply agreements with Heraeus and Baxter, pursuant to which they produce picoplatin active pharmaceutical ingredient ("API") and finished drug product, respectively, for our clinical trials. Manufacturing services under these clinical supply agreements are provided on a purchase order, fixed-fee basis. Our API clinical supply agreement continues in effect until it is terminated by mutual agreement of the parties or by either party in accordance with its terms. Our finished drug product clinical supply agreement runs for an initial term ending December 31, 2009, and is subject to renewal for two additional one-year terms, at our option. The total aggregate cost of clinical supplies of picoplatin API and finished drug product for the three and nine months ended September 30, 2009 was $0.3 million and $1.3 million, respectively. We believe that we presently have adequate supplies of picoplatin API and finished drug product to complete our current clinical trials.

        We also have entered into a commercial picoplatin API manufacturingcommercial supply agreement with W.C. Heraeus GmbH, which is also the manufacturer ofin March 2008 and a finished drug product commercial supply agreement with Baxter in November 2008. Under these agreements, Heraeus and Baxter will produce picoplatin API and finished drug product, respectively, for our clinical trials.commercial use. Manufacturing services are provided on a purchase order, fixed-fee basis, subject to certain purchase price adjustments and minimum quantity requirements. The costs to Heraeus for the purchase and set-up of dedicated equipment, estimated to be approximately $1.5$1.8 million (including interest charges of approximately $0.3 million), will be repaid by us in the form of a surcharge on an agreed upon amount of the picoplatin API ordered and delivered on or before December 31, 2013. If we order and take delivery of less than the agreed upon amount of picoplatin API through December 31, 2013, we will be obligated to pay the balance of the dedicated equipment cost as of that date. As of September 30, 2009, Heraeus had completed partial construction of the dedicated equipment at a cost of approximately $1.7 million (including interest). Because we are not under a present obligation to pay this amount and the agreement is not under any potential circumstance of default or termination, it is not probable that a financial liability exists for this amount as of September 30, 2009 and therefore no such liability was recorded on the condensed consolidated balance sheet as of that date. We anticipate that the dedicated equipment will be ready for use during the fourth quarter of 2009, after which we expect to account for the equipment and related surcharge payments as a capital lease.

        If we are successful in our efforts to commercialize picoplatin, we would, under our amended license agreement with Genzyme, Corporation, be required to pay Genzyme up to $5.0 million in commercialization


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milestones upon the attainment of certain levels of annual net sales of picoplatin. Genzyme also would be entitled to royalty payments of up to 9% of annual net product sales.sales of product.

        On August, 19, 2009, we entered into a common stock purchase agreement with Azimuth Opportunity Ltd. ("Azimuth"), pursuant to which we obtained a committed equity line of credit facility under which we may sell up to $60 million newly issued registered shares of our common stock to Azimuth at a pre-negotiated discount to market price. We will determine, at our sole discretion, the timing and amount of any sales of our common stock, subject to certain conditions, including limitations based on the price of our common stock (minimum price of $3.00 per share) and a limit of 2.5% of our market capitalization at the time of the stock issuance. In no event may we sell more than 6,955,606 shares of our common stock to Azimuth. The term of the purchase agreement is 18 months. We are not obligated to utilize the facility with Azimuth and remain free to enter into other financing transactions. As of September 30, 2009, no shares have been sold to Azimuth under the facility.

        We will require substantial additional funding to develop and commercialize picoplatin and any other proposed products and to fund our operations. Management is continuously exploring financing alternatives, including:

    raising additional capital through the public or private sale of equity or debt securities or through the establishment of credit or other funding facilities; and

    entering into strategic collaborations, which may include joint ventures or partnerships for product development and commercialization, merger, sale of assets or other similar transactions.

        If we are unable to obtain sufficient additional cash when needed, we may be forced to delay, scale back or eliminate some or all of our picoplatin trials and commercialization efforts, reduce our workforce, license our picoplatin product candidates for development and commercialization by third parties, attempt to sell the company or, if these efforts fail, cease operations or declare bankruptcy. Provisions of the loan agreement would limit our ability to dispose of certain assets, engage in certain mergers, incur certain indebtedness, make certain distributions and engage in certain investment activities.

Our actual capital requirements will depend upon numerous factors, including:

    the costs of performing our obligations under our loan facility with GE Healthcare Financial Services and Silicon Valley Bank, including the cost of interest and other payment obligations and penalties and the cost of complying with the covenants and restrictions under the amended and restated loan agreement;

    the scope and timing of our picoplatin clinical program and other research and developmentcommercialization efforts, including the progress and costs of our ongoing Phase II and Phase III clinical trialstrial of picoplatin in small cell lung cancer and our ongoing Phase II clinical trials in advanced colorectal and prostate cancers, as well as our Phase I clinical trial of picoplatin (oral formulation) in solid tumors;cancers;

    our ability to obtain clinical supplies of picoplatin API and finished drug product in a timely and cost-effectivecost effective manner;

    actions taken by the FDA and other regulatory authorities;

    the timing and amount of any milestone or other payments we might receive from or be requiredobligated to pay to potential strategic partners;

    our degree of success in commercializing picoplatin or any other product candidates;picoplatin;

    the emergence of competing technologies and products, and other adverse market developments;

    the acquisition or in-licensing of other products or intellectual property;

    the costs incurred in connection with the planned expansion of our workforce;

    the costs of any research collaborations or strategic partnerships established; and

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    the costs of preparing, filing, prosecuting, maintaining and enforcing patent claims and other intellectual property rights; and

    the costs of performing our obligations under the loan facility with Silicon Valley Bank and GE Business Financial Services., including the cost of interest and other payment obligationsrights.

      and potential penalties and the cost of complying with unrestricted cash requirements and other covenants under the loan agreement.

        There can be no assurance that we willWe may not be able to raise additionalobtain capital or enter into relationships with corporate partners on a timely basis, on favorable terms, or at all. Conditions in the capital markets in general, and in the life science capital market specifically, may affect our potential financing sources and opportunities for strategic partnering. Our consolidated financial statements arehave been prepared onin accordance with accounting principles generally accepted in the United States, assuming that we will continue as a going concern basis; however, our inability to obtain additional cash as needed could have a material adverse effect on our financial position, results of operations and our ability to continue in existence. Our consolidated financial statements do not include any adjustments that might result from the outcome of this uncertainty. The report of independent registered public accountants issued in connection with our annual report on Form 10-K for the year ended December 31, 2008 contains a statement expressing substantial doubt regarding our ability to continue as a going concern.

Item 3.    Quantitative and Qualitative Disclosures aboutAbout Market Risk

        Our market rate risks at September 30, 20082009 have not changed materially from those discussed in Item 7A of our Form 10-K for the year ended December 31, 2007.2008.

Item 4.    Controls and Procedures

        Under the supervision and with the participation of the Company's management, including the Company's Chief Executive Officer and Chief Financial Officer, the Company has evaluated the effectiveness and design of its disclosure controls and procedures (as such term is defined in Exchange Act Rules 13a-15(e) and 15d-15(e)) as of September 30, 2008,2009, to ensure that the information disclosed by the Company in the reports that the Company files or submits under the Securities Exchange Act of 1934, as amended, is recorded, processed, summarized and reported within the time periods specified in the rules and forms. Based on this evaluation, the Chief Executive Officer and the Chief Financial Officer have concluded that, as of September 30, 2008,2009, these disclosure controls and procedures were effective.

        There were no changes in the Company's internal control over financial reporting that occurred during the quarter that have materially affected, or are reasonably likely to materially affect, the Company's control over financial reporting.

Limitations on the Effectiveness of Controls

        The Company's management, including its Chief Executive Officer and its Chief Financial Officer, does not expect that the Company's disclosure controls or internal controls will prevent all errors and all fraud. A control system, no matter how well conceived and operated, can provide only reasonable, not absolute, assurance that the objectives of that control system are met. Further, the design of a control system must reflect the fact that there are resource constraints, and the benefits of control must be considered relative to their costs. Because of the inherent limitation in all control systems, no evaluation of controls can provide absolute assurance that all control issues and instances of fraud, if any, within the Company have been detected. These inherent limitations include the reality that judgments in decision-making can be faulty, and breakdowns can occur because of simple error or mistake. Additionally, controls can be circumvented by the individual acts of some persons, by collusion of two or more persons, or by management override of the control. The design of any system of controls is also based in part upon certain assumptions about the likelihood of future events, and there can be no assurance that any design will succeed in achieving its stated goals under all potential future conditions. Over time, controls may become inadequate because of changes in conditions or deterioration in the degree of compliance with the policies and procedures. Because of the inherent limitations in a cost-effective control system, misstatements due to error or fraud may occur and not be detected.


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PART II. OTHER INFORMATION

Item 1A.    Risk Factors

        Our Annual Report on Form 10-K for the year ended December 31, 20072008 filed with the SEC on March 13, 2008,16, 2009, contains a detailed discussion of certain risk factors that could materially adversely affect our business, operating results and/or financial condition. In addition to other information contained in this report, you should carefully consider the potential risks or uncertainties that we have identified in Part I, "Item 1A, Risk Factors," in our Form 10-K. Other than the updated risk factor set forth in our Form 10-Q for the period ended June 30, 2008, which was filed with the SEC on August 7, 2008, there have not been any material changes in the risk factors disclosed in our Form 10-K. These risk factors are not the only ones affecting our company. Additional risks and uncertainties not currently deemed to be material also may materially or adversely affect our business, financial condition or results of operations.

Item 6.    Exhibits

    (a)
    Exhibits—See Exhibit Index below.

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    SIGNATURES

            Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned thereunto duly authorized.

      PONIARD PHARMACEUTICALS, INC.
    (Registrant)

    Date:    November 6, 20082009

     

    By:

     

    /s/ CAROLINE M. LOEWYGREGORY L. WEAVER

    Caroline M. LoewyGregory L. Weaver
    Chief Financial Officer

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    EXHIBIT INDEX

    Exhibit
     Description  
     10.13.2 AmendedRestated Bylaws, as amended June 23, 2009(A)


    10.1


    Indemnification Agreement dated July 7, 2009, between the Company and Restated Loan and SecurityGary A. Lyons


    (B)


    10.2


    Consulting Agreement dated as of September 2, 2008, by and amongApril 1, 2009, between the Company GE Business Financial Services Inc. and Silicon Valley BankGary A. Lyons, as amended by Amendment One to Consulting Agreement effective July 11, 2009

     
    (A)
    (B)


    10.3


    Restricted Stock Unit Award Notice and Restricted Stock Unit Award Agreement, dated July 11, 2009, with Gary A. Lyons


    (B)

     

    31.1

     

    Rule 13a-14(a)/15d-14(a) Certification of Chairman and Chief Executive Officer

     

    (B)(C)

     

    31.2

     

    Rule 13a-14(a)/15d-14(a) Certification of Chief Financial Officer

     

    (B)(C)

     

    32.1

     

    Section 1350 Certification of Chairman and Chief Executive Officer

     

    (B)(C)

     

    32.2

     

    Section 1350 Certification of Chief Financial Officer

     

    (B)(C)

    (A)
    Filed as an Exhibitexhibit to the Company's Current Report on Form 8-K filed with the SEC on September 6, 2008June 25, 2009, and incorporated herein by reference.

    (B)
    Filed as an exhibit to the Company's Current Report on Form 8-K filed on July 13, 2009, and incorporated herein by reference.

    (C)
    Filed herewith.



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    TABLE OF CONTENTS QUARTERLY REPORT ON FORM 10-Q FOR THE QUARTER ENDED SEPTEMBER 30, 2008
    PART I. FINANCIAL INFORMATION
    PONIARD PHARMACEUTICALS, INC. AND SUBSIDIARY CONDENSED CONSOLIDATED BALANCE SHEETS (unaudited) (in thousands, except share data)
    PONIARD PHARMACEUTICALS, INC. AND SUBSIDIARY CONDENSED CONSOLIDATED STATEMENTS OF OPERATIONS (unaudited) (in thousands, except per share amounts)
    PONIARD PHARMACEUTICALS, INC. AND SUBSIDIARY CONDENSED CONSOLIDATED STATEMENTS OF CASH FLOWS (unaudited) (in thousands)
    PONIARD PHARMACEUTICALS, INC. AND SUBSIDIARY NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS (Unaudited)
    Summary of Research and Development Costs
    PART II. OTHER INFORMATION
    SIGNATURES
    EXHIBIT INDEX