AS FILED WITH THE 

As filed with the Securities and Exchange Commission on November 30, 2005

Commission File No.: 333-


UNITED STATES

SECURITIES AND EXCHANGE COMMISSION ON JANUARY 10, 2001 REGISTRATION NO. 333-51960 - -------------------------------------------------------------------------------- - -------------------------------------------------------------------------------- SECURITIES AND EXCHANGE COMMISSION WASHINGTON,

Washington, D.C. 20549 ------------------------ AMENDMENT NO. 1 TO

FORM S-1

REGISTRATION STATEMENT

UNDER

THE SECURITIES ACT OF 1933 ------------------------

TRANSGENOMIC, INC. (Exact name

(Exact Name of Registrant as specified in its charter) As Specified In Its Charter)

DELAWARE 3826
Delaware91-1789357 (State
(State of incorporation) (Primary standard industrial (IRS employer classification code number) identification no.) Incorporation)(IRS Employer I.D. Number)

12325 EMMET STREET OMAHA, NEBRASKAEmmet Street Omaha, Nebraska 68164 (402) 452-5400 (Address,

(Address, including zip code, and telephone number, including area code, of Registrant'sregistrant’s principal executive offices) COLLIN

Collin J. D'SILVA PRESIDENT AND CHIEF EXECUTIVE OFFICERD’Silva

President and Chief Executive Officer 12325 EMMET STREET OMAHA, NEBRASKAEmmet Street Omaha, Nebraska 68164 (402) 452-5400 (Name,

(Name, address including zip code, and telephone number including area code, of agentAgent for service) Please address a copy of all communicationsService)

Copies to: STEVEN

Steven P. AMEN, ESQ. KUTAK ROCKAmen

Kutak Rock LLP

1650 FARNAM STREET OMAHA, NEBRASKAFarnam Street

Omaha, Nebraska 68102

Tel: (402) 346-6000 ------------------------

Fax: (402) 346-1148

APPROXIMATE DATE OF COMMENCEMENT OF PROPOSED SALE TO THE PUBLIC: January 15, 2001 From time to time after the effective date of this Registration Statement as determined by market conditions.

If the only securities being registered on this Form are being offered pursuant to dividend or interest reinvestment plans, please check the following box.¨

If any of the securities being registered on this Form are to be offered on a delayed or continuous basis pursuant to Rule 415 under the Securities Act of 1933, other than securities offered only in connection with dividend or interest reinvestment plans, check the following box. /X/ x

If this Form is filed to register additional securities for an offering pursuant to Rule 462(b) under the Securities Act, please check the following box and list the Securities Act registration statement number of the earlier effective registration statement for the same offering. / / ¨

If this Form is a post-effective amendment filed pursuant to Rule 462(c) under the Securities Act, check the following box and list the Securities Act registration statement number of the earlier effective registration statement for the same offering. / / If this Form is a post-effective amendment filed pursuant to Rule 462(d) under the Securities Act, check the following box and list the Securities Act registration statement number of the earlier effective registration statement for the same offering. / / ¨

If delivery of the prospectusProspectus is expected to be made pursuant to Rule 434, please check the following box. / / - -------------------------------------------------------------------------------- - -------------------------------------------------------------------------------- THE INFORMATION IN THIS PROSPECTUS IS NOT COMPLETE AND MAY BE CHANGED. THESE SECURITIES MAY NOT BE SOLD UNTIL THE¨

CALCULATION OF REGISTRATION STATEMENT FILED WITH THE SECURITIES AND EXCHANGE COMMISSION BECOMES EFFECTIVE. THIS PROSPECTUS IS NOT AN OFFER TO SELL THESE SECURITIES AND NO ONE IS SOLICITING OFFERS TO BUY THESE SECURITIES IN ANY JURISDICTION WHERE THE OFFER IS SALE IS NOT PERMITTED. FEE


Title of each class

of securities to be

Registered

  

Amount

to be

registered

 

Proposed maximum

offering price

per unit(1)

  

Proposed Maximum

Aggregate

Offering Price

  

Amount of

Registration

Fee

Common Stock, par value $0.01

  25,038,320(2) $0.885  $22,158,913  $2,371

(1)Calculated pursuant to Rule 457(c) based on the average of the high and low sale price of the shares reported on the Nasdaq Stock Market on November 25, 2005.

(2)Consists of 16,975,743 shares currently outstanding and 8,039,640 shares issuable upon exercise of warrants.

We hereby amend this Registration Statement on such date or dates as may be necessary to delay its effective date until we file a further amendment which specifically states that this Registration Statement shall thereafter become effective in accordance with Section 8(a) of the Securities Act of 1933 or until this Registration Statement shall become effective on such date as the Commission, acting according to Section 8(a), may determine.



The information in this Prospectus is not complete and may be changed. These securities may not be sold until the registration statement filed with the Securities and Exchange Commission is effective. This Prospectus is not an offer to sell these securities and is not seeking an offer to buy these securities in any state where the offer or sale is not permitted.

Subject to Completion, dated November 30, 2005

PRELIMINARY PROSPECTUS DATED JANUARY 10, 2001 3,195,047 SHARES [LOGO]

25,038,320 Shares

TRANSGENOMIC, INC.

COMMON STOCK The holders of 3,195,047

This Prospectus covers 25,038,320 shares (“Shares”) of our common stock that the selling stockholders listed under “Principal and Selling Stockholders” may sell some or allfrom time to time. These Shares consist of:

up to 16,975,743 Shares outstanding held by the selling shareholders; and

up to 8,062,577 Shares that may be issued upon exercise of these shares under this prospectus. Theseoutstanding warrants.

The selling stockholders may sell the shares at the then prevailing market price for our common stockthe shares at the time of the sale, or at other prices. The last reported sale price for our common stock on November 29, 2005 was $0.96 per share. The selling stockholders are offering the Shares as described under “Plan of Distribution.” We will not receive any of the proceeds from the sale of these shares by these stockholders. In July 2000, we sold 5,152,000 shares of our common stock in our initial public offering. The underwriters of our initial public offering are not underwriting any of the shares being sold by the selling stockholders. Priorstockholders, but will be entitled to our initial public offering, there was no public market for our common stock. ------------------------ the proceeds from the exercise of outstanding warrants.

Our common stock is listed on the Nasdaq National Market under the symbol TBIO. ------------------------“TBIO.”

Investing in our common stock involves a high degree of risk. You should carefully consider the information under the heading “Risk Factors” beginning on page 5 of this Prospectus before buying shares of our common stock.

Neither the Securities and Exchange Commission nor any state securities commission has approved or disapproved of these securities or passed upon the adequacy or accuracy of this Prospectus. Any representation to the contrary is a criminal offense.

, 2005


TABLE OF CONTENTS

PROSPECTUS SUMMARY

1

RISK FACTORS

5

USE OF PROCEEDS

10

PRICE RANGE OF COMMON STOCK AND DIVIDEND POLICY

10

SELECTED FINANCIAL DATA

12

CAPITALIZATION

14

MANAGEMENT’S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITIONS AND RESULTS OF OPERATIONS

15

BUSINESS

31

MANAGEMENT

36

PRINCIPAL AND SELLING STOCKHOLDERS

45

DESCRIPTION OF CAPITAL STOCK

48

PLAN OF DISTRIBUTION

51

EXPERTS

52

LEGAL OPINIONS

52

WHERE YOU CAN FIND MORE INFORMATION

53

INDEX TO FINANCIAL STATEMENTS

Forward-Looking Statements

This Prospectus contains certain forward-looking statements. Many of these forward-looking statements refer to our plans, objectives, expectations and intentions, as well as our future financial results and are subject to risk and uncertainty. You can identify these forward-looking statements by words such as “expects,” “anticipates,” “intends,” “plans,” “may,” “believes,” “seeks,” “estimates” and similar expressions. Because these forward-looking statements involve risks and uncertainties, there are many factors that could cause our actual results to differ materially from those expressed or implied by these forward-looking statements, including those discussed under “Risk Factors” in this Prospectus or described in reports that we file from time to time with the Securities and Exchange Commission, such as our Forms 10-K and 10-Q, as amended.

You should rely only on the information contained in this Prospectus. We have not authorized any other person to provide you with different information. If anyone provides you with different or inconsistent information, you should not rely on it. The information in this Prospectus is current as of its date. Our business, financial condition, results of operations and prospects may have changed since that date.


PROSPECTUS SUMMARY

The items in the following summary are described in more detail later in this Prospectus. This summary provides an overview of selected information and does not contain all of the information you should consider. Therefore, you should also read the more detailed information set out in this Prospectus, including the consolidated financial statements and related notes appearing elsewhere in this Prospectus, before investing in our common stock. In particular, you should carefully consider the information discussed under “Risk Factors.” All references to “we,” “us” or the “Company” in this Prospectus mean Transgenomic, Inc.

TRANSGENOMIC, INC.

Our Business

We develop, manufacture and sell innovative products for the analysis, synthesis and purification of nucleic acids through two operating segments, BioSystems and Nucleic Acids.

The BioSystems operating segment develops, assembles, manufactures and markets versatile products and provides analytical services to the medical research, clinical and pharmaceutical markets for use in genetic variation analysis. Products and services are sold through a direct sales force in the United States and throughout much of Western Europe. For the rest of the world, products and services are sold through more than 25 dealers and distributors located in those local markets. Net sales from this operating segment are categorized as bioinstruments, bioconsumables and discovery services.

Bioinstruments. The flagship product of the BioSystems operating segment is the WAVE system which has broad applicability to genetic variation detection in both molecular genetic research and molecular diagnostics. There was a world-wide installed base of 1,269 WAVE systems as of September 30, 2005. Additionally, this operating segment utilizes its sales and distribution network to sell a number of independent, third party equipment platforms. Service contracts to maintain installed systems are sold and supported by technical support personnel.

Bioconsumables. The installed WAVE base generates a demand for consumables that are required for the system’s continued operation. These products are developed, manufactured and sold by this operating segment. In addition, the BioSystems operating segment manufactures and sells consumable products that can be used on multiple, independent platforms. These products include SURVEYOR Nuclease and a range of HPLC separation columns.

Discovery Services. The BioSystems operating segment provides various genetic laboratory services through a contract research lab in Gaithersburg, Maryland and a second laboratory in Omaha, Nebraska that operates in a Good Laboratory Practices (“GLP”) compliant environment and is certified under the Clinical Laboratory Improvement Amendment. The services provided primarily include (1) genomic biomarker analysis services to pharmaceutical and biopharmaceutical companies to support preclinical and clinical development of targeted therapeutics; and (2) molecular-based testing for hematology, oncology and certain inherited diseases for physicians and third-party laboratories.

The Nucleic Acids operating segment develops, manufactures and markets chemical building blocks for nucleic acid synthesis to biotechnology, pharmaceutical, oligonucleotide synthesis companies and research institutions throughout the world. These products are produced primarily in this operating segment’s only facility, in Glasgow, Scotland. Prior to November 11, 2004, this operating segment also manufactured synthesized segments of nucleic acids (known as oligonucleotides) in a facility in Boulder, Colorado. On November 11, 2004, the assets associated with this facility were sold to an unaffiliated

third party. As a result, the Nucleic Acids operating segment no longer manufactures and sells these specialized oligonucleotides. A substantial portion of this operating segment’s revenues during 2005 and 2004 have been derived from one customer.

We have experienced recurring net losses resulting in an accumulated deficit of $110.88 million at September 30, 2005 and have historically relied upon cash flows from investing and financing activities to offset significant cash outflows from operating activities. We instituted significant changes during the fourth quarter of 2004 designed to, among other things, better align our cost structure with projected revenues, focus on opportunities in our BioSystems operating segment, and minimize the adverse financial effect of our Nucleic Acids operating segment. Specifically, during the fourth quarter of 2004, we sold our manufacturing facility in Boulder, Colorado and implemented a restructuring plan. While the primarily goals of these changes were to provide the foundation for a self-sustaining, growth-oriented company with positive cash flows and earnings, there can be no assurance that we can achieve these goals. Our business strategy going forward is to achieve revenue growth in our BioSystems operating segment and to better align our cost structure with anticipated revenues in both of our operating segments.

Recent Financing Activities

On October 31, 2005, we closed on a private placement of securities to institutional investors (the “2005 Private Placement”). The securities issued consisted of: (i) 14,925,743 shares of the Company’s common stock, plus (ii) five-year, non-callable warrants to purchase another 5,970,297 shares of common stock with an exercise price of $1.20 per share. The aggregate purchase price for the securities sold was $1.01 per share of common stock initially being sold or $15.08 million. In conjunction with this transaction, we issued a warrant to Oppenheimer & Co., Inc. to purchase 932,859 shares at $1.20 per share as part of their placement fee.

The net proceeds from the 2005 Private Placement were $13.90 million after transaction costs of $1.18 million. These proceeds were partially used to repay all outstanding principal and accrued interest on our convertible line of credit (the “Credit Line”) and convertible term note (the “Term Note”) to Laurus Master Fund, Ltd. (“Laurus”) (collectively, the “Laurus Loans”) including fees to facilitate the 2005 Private Placement and prepayment penalties to Laurus in the sum of $0.82 million. As a result, our Laurus Loans have been cancelled and are no longer available to us. The remaining proceeds of $5.35 million will be used for future working capital needs.

Shares to be sold by Selling Stockholders

This Prospectus covers 25,038,320 shares of our common stock that the selling stockholders listed under “Principal and Selling Stockholders” may offer and resell from time to time. These shares consist of (i) 14,925,743 shares issued in conjunction with the 2005 Private Placement; (ii) 6,903,156 shares issuable upon the exercise of warrants that were also issued in conjunction with the 2005 Private Placement; (iii) 2,050,000 shares in conjunction with a private placement that closed in the fourth quarter of 2003; and (iv) 1,159,421 shares issuable upon the exercise of outstanding warrants that were issued primarily in conjunction with our past indebtedness to Laurus. The exercise price of these warrants range from $1.20 to $3.18 per share. The selling stockholders are offering the common stock as described under "Plan“Plan of Distribution." ------------------------ INVESTING IN OUR COMMON STOCK INVOLVES A HIGH DEGREE OF RISK. SEE "RISK FACTORS" BEGINNING ON PAGE 7. --------------------- NEITHER THE SECURITIES AND EXCHANGE COMMISSION NOR ANY STATE SECURITIES COMMISSION HAS APPROVED OR DISAPPROVED OF THESE SECURITIES OR PASSED UPON THE ADEQUACY OR ACCURACY OF THIS PROSPECTUS. ANY REPRESENTATION TO THE CONTRARY IS A CRIMINAL OFFENSE. January 15, 2001 TABLE OF CONTENTS
PAGE -------- Prospectus Summary.......................................... 1 Risk Factors................................................ 7 Forward-Looking Statements.................................. 15 Price Range of Common Stock and Dividend Policy............. 15 Selected Financial Data..................................... 16 Management's Discussion and Analysis of Financial Condition and Results of Operations................................. 17 Business.................................................... 24 Management.................................................. 37 Principal Stockholders...................................... 43 Related Party Transactions.................................. 47 Description of Capital Stock................................ 48 Shares Eligible for Future Sale............................. 51 Plan of Distribution........................................ 52 Legal Matters............................................... 53 Experts..................................................... 53 Where You Can Find More Information......................... 54 Index to Financial Statements............................... F-1
THIS PROSPECTUS CONTAINS REFERENCES TO OUR REGISTERED TRADEMARKS WAVE-REGISTERED TRADEMARK- AND DNASEP-REGISTERED TRADEMARK-. WAVEMAKER-TM-, WAVE OPTIMIZED-TM- AND THE TRANSGENOMIC NAME AND THE TRANSGENOMIC LOGO ARE OUR TRADEMARKS FOR WHICH REGISTRATION APPLICATIONS HAVE BEEN FILED WITH THE UNITED STATES PATENT AND TRADEMARK OFFICE. ALL OTHER TRADEMARKS OR TRADE NAMES REFERRED TO IN THIS PROSPECTUS ARE THE PROPERTY OF THEIR RESPECTIVE OWNERS. PROSPECTUS SUMMARY THE SUMMARY HIGHLIGHTS SELECTED INFORMATION CONTAINED ELSEWHERE IN THIS PROSPECTUS. THIS SUMMARY DOES NOT CONTAIN ALL THE INFORMATION YOU SHOULD CONSIDER BEFORE INVESTING IN OUR COMMON STOCK. YOU SHOULD READ THE ENTIRE PROSPECTUS CAREFULLY, INCLUDING "RISK FACTORS" AND OUR CONSOLIDATED HISTORICAL AND PRO FORMA FINANCIAL STATEMENTS AND THE NOTES TO THOSE FINANCIAL STATEMENTS BEGINNING ON PAGE F-1, BEFORE MAKING AN INVESTMENT DECISION. TRANSGENOMIC OUR BUSINESS

At November 29, 2005, we had 49,172,079 shares issued and outstanding. The number of shares outstanding does not include (i) the 8,062,577 shares issuable upon the exercise of outstanding warrants and (ii) up to 6,246,231 shares of our common stock that we could issue under our employee stock option plan of which 5,541,015 options are outstanding.

Use of Proceeds

This Prospectus relates to shares of our common stock that may be offered and sold from time to time by the selling stockholders. This Prospectus also relates to common stock issuable upon the exercise of warrants held by certain selling stockholders. We provide innovative research toolswill not receive any proceeds from the sale of shares of common stock in this offering. We will, however, receive proceeds from the exercise of the warrants, if exercised. The proceeds from the exercise of warrants, if any, will be used for working capital purposes.

Summary Consolidated Financial Information

The following tables present our summary consolidated historical financial information for the periods indicated. You should read this information together with the consolidated financial statements and related notes and the information under “Management’s Discussion and Analysis of Financial Condition and Results of Operations” included elsewhere in this Prospectus. The summary consolidated balance sheet data at December 31, 2004 and 2003 and the summary consolidated statements of operations data for each year ended December 31, 2004, 2003 and 2002 have been derived from our audited consolidated financial statements that are included elsewhere in this Prospectus. The summary consolidated balance sheet data at September 30, 2005 and the summary consolidated statements of operations data for the nine months ended September 30, 2005 and 2004 are derived from our unaudited condensed consolidated financial statements included elsewhere in this Prospectus. The unaudited condensed consolidated financial statements include, in the opinion of management, all adjustments that management considers necessary for the fair presentation of the financial information set forth in those statements. Historical results are not necessarily indicative of the results to be expected in the future. The as adjusted balance sheet data as of September 30, 2005 and the as adjusted statements of operations data for the nine months ended September 30, 2005 and the year ended December 31, 2004 give effect to the genomics segment2005 Private Placement and simultaneous repayment of the life sciences industry. These tools enable researchers to discoverLaurus Loans as if is such transactions had occurred as of September 30, 2005 for purposes of the balance sheet data and understand variations inas of January 1, 2004 for purposes of the human genetic code, or genome. Understanding the rolestatement of variations in the human genetic code may lead to the development of new drugs and diagnostic techniques. We believeoperations data. Such amounts have been derived from our WAVE System, which incorporates our proprietary DNASep separation column and associated software, chemical reagents and other consumable items, will become a leading tool to analyze genetic mutations. The WAVE System allows researchers to analyze both known and unknown genetic mutations faster, with more accuracy and at a lower cost than other commercially available techniques. As efforts to sequence the human genome near completion, understanding variations in the genetic sequence, or mutation analysis, is becoming the vital link to the development of new drug products and diagnostics. By comparing genetic mutations in the genome to the occurrence of diseases or particular traits, correlations can be made between genes and specific diseases or traits. Our WAVE System, unlike tools employing more conventional technologies, can detect these genetic mutations without previous knowledge of their existence or position. As a result, the WAVE System provides researchers a more accurate and efficient means of performing the experiments necessary to identify mutations and to correlate the relationships between mutations and diseases. OUR TECHNOLOGY AND PRODUCTS Our WAVE System is designed to perform high-speed, automated analyses of DNA molecules to identify the type, location and frequency of DNA mutations, with a high degree of accuracy and consistency. The WAVE System is based on our proprietary micro-bead technology. Our patented micro-beads are packed into our proprietary DNASep separation column, which is the key component of our WAVE System. Each micro-bead has specific surface chemistry that interacts with DNA molecules. The DNA molecules are then selectively separated from the micro-beads with a mixture of our liquid reagents. This process is automated by our proprietary WAVEMaker Software for analysis and interpretation. RESEARCH AND DEVELOPMENT We maintain an active research and development program. Our research and development work is focused on making improvements to the WAVE Systemas adjusted unaudited condensed consolidated financial statements that are needednot included in this Prospectus. For a detailed description of the related adjustments refer to adapt it to commercial applications such as diagnostics research and drug development. CUSTOMERS Since the product launch“Capitalization Table” on page 14. Dollar amounts, except per share data, are presented in August 1997, we have sold over 450 WAVE Systems in 20 countries to core laboratory facilities, academic research centers, medical institutions and biopharmaceutical companies. Customers that have purchased at least one WAVE System include Harvard University, Stanford University, Baylor College of Medicine, University of Chicago, Fred Hutchison Cancer Research Facility, Mayo Clinic, National Cancer Institute, National Institutes of Health, Institut Curie, 1 University of Cambridge, Wellcome Trust-Oxford University, Institut Gustave Roussy, SmithKline Beecham, Bristol-Meyers Squibb, Millennium Pharmaceuticals, Merck & Company, Novartis and Eli Lilly and Company. OUR STRATEGY We intend to be the leading provider of technology platforms which enable life sciences researchers to discover and understand variations in the human genome, in order to accelerate and improve drug development and diagnostics. Key elements of this strategy include: - FOCUS ON THE GENETIC VARIATION DISCOVERY MARKET; - ESTABLISH THE WAVE SYSTEM AS THE INDUSTRY STANDARD; - INCREASE CONSUMABLE SALES; - PENETRATE NEW MARKETS; AND - BUILD A SUBSTANTIAL INTELLECTUAL PROPERTY ESTATE. RECENT DEVELOPMENTS thousands.

   Nine Months Ended September 30,

  Year Ended December 31,

 
   2005

  2005

  2004

  2004

  2004

  2003

  2002

 
      As Adjusted        As Adjusted       

Statement of Operations Data:

                             

Net sales

  $23,711  $23,711  $25,834  $33,789  $33,789  $33,866  $37,554 

Cost of good sold

   13,609   13,609   18,484   24,596   24,596   24,315   19,569 
   


 


 


 


 


 


 


Gross profit

   10,102   10,102   7,350   9,193   9,193   9,551   17,985 

Selling, general and administrative

   10,023   10,023   12,866   17,499   17,499   17,324   24,199 

Research and development

   1,696   1,696   5,344   6,685   6,685   9,305   12,201 

Restructuring charges(1)

   —     —     —     3,570   3,570   738   3,282 

Impairment charges(2)

   247   247   11,964   11,965   11,965   4,772   —   

Gain on sale of facility(3)

   —     —     —     (1,466)  (1,466)  —     —   

Gain on sale of product line

   —     —     —     —     —     —     —   
   


 


 


 


 


 


 


Operating expenses

   11,966   11,966   30,174   38,253   38,253   32,139   39,682 

Other income (expense)(4)

   (1,888)  (611)  (4,704)  (5,406)  (239)  (305)  437 
   


 


 


 


 


 


 


Loss before income taxes

   (3,752)  (2,475)  (27,528)  (34,466)  (29,299)  (22,893)  (21,260)

Income tax (benefit) expense

   27   27   (94)  (94)  (94)  65   105 
   


 


 


 


 


 


 


Net loss

  $(3,779) $(2,502) $(27,434) $(34,372) $(29,205) $(22,958) $(21,365)
   


 


 


 


 


 


 


Basic and diluted loss per share

  $(0.12) $(0.05) $(0.95) $(1.19) $(0.66) $(0.94) $(0.91)

Basic and diluted weighted average shares outstanding

   32,837   47,763   28,951   29,066   43,992   24,484   23,583 

   As of September 30, 2005

  As of December 31,

   Actual

  As Adjusted

  2004

  2003

Balance Sheet Data:

                

Total assets(5)

  $31,789  $37,163  $37,458  $57,306

Borrowings under credit line

   6,935   —     6,514   2,142

Current portion of long-term debt

   675   —     825   1,693

Long-term debt, less current portion

   1,226   —     2,199   —  

Total stockholders’ equity

   15,577   29,220   16,535   45,058

(1)Restructuring plans were implemented in 2002 and 2004 to reduce and align our expenses with current business prospects. The plans included employee terminations, office closures, termination of collaborations and write-offs of abandoned intellectual property. As a result, restructuring charges were recorded and are included in operating expenses. See Note N to the accompanying consolidated financial statements.

(2)Impairment charges relate primarily to the impairment of goodwill, and in 2004, also include a charge of $2,100 related to the impairment of property and equipment. See Note C to the accompanying consolidated financial statements.

(3)Gain on sale of facility relates to the sale of our specialty olignucleotide manufacturing facility in Boulder, Colorado during the fourth quarter of 2004. See note M to the accompanying consolidated financial statements.

(4)Other income (expense) for all years presented primarily includes interest expense and in 2004 it includes a loss on debt extinguishment of $2,859 resulting from certain modifications to our Laurus Loans that were treated as extinguishments for financial reporting purposes. See Note E to the accompanying consolidated financial statements.

(5)The reduction in total assets from December 31, 2003 to December 31, 2004 related primarily to impairment charges of $11,965 in our Nucleic Acids operating segment (see Notes C and K to the accompanying consolidated financial statements) and the sale of our specialty oligonucleotide manufacturing facility in Boulder, Colorado (see Note M to the accompanying consolidated financial statements). The reduction in total assets from December 31, 2002 to December 31, 2003 related primarily to operating losses that were funded by reductions in cash and cash equivalents and short term investments.

General Information

We were incorporated in Delaware on March 6, 1997 to develop, manufacture and market our DNA separation and analysis products in addition to continuing to manufacture and sell the non-life sciences instrumentation products that were being manufactured and sold by our predecessor company, CETAC Holding Company, Inc. and its subsidiaries, CETAC Technologies, Inc., Sarasep, Inc. and Interaction Chromatography, Inc. On July 1, 1997, we merged CETAC Holding Company, Inc. and its subsidiaries into Transgenomic. We have since decided to focus our resources on our life sciences products and recently sold the assets related to our non-life sciences instrument product line. See "Related Party Transactions." On July 21, 2000, we completed the initial public offering of our common stock. We sold 5,152,000 shares at a price of $15.00 per share in our initial public offering. In addition, we issued 300,000 shares of our common stock at $5.00 per share to the holder of a warrant on the same date. On August 15, 2000, we converted $12 million of our convertible notes, plus accrued interest, into 2,750,906 shares of our common stock.1997. Our principal office is located at 12325 Emmet Street, Omaha, Nebraska 68164 (telephone: 402-452-5400). We maintain manufacturing facilities in Omaha, Nebraska, San Jose, California, Glasgow, Scotland and our principalCramlington, England. We maintain research and development officeoffices in San Jose, California (telephone: 408-432-3230). OurGaithersburg, Maryland and Omaha, Nebraska.

We make reports filed by us with the SEC available free of charge on our website as soon as reasonably practicable after these reports are filed. The address of our website is located at http://www.transgenomic.com. The information contained inInformation on our website, including any SEC report, is not part of this prospectus,Prospectus and you should not rely only on the information contained in this prospectusit in deciding whether to invest in our common stock. 2 SHARES TO BE SOLD BY SELLING STOCKHOLDERS Common Stock offered by Selling Stockholders................ 3,195,047 shares Common Stock outstanding.................................... 21,205,566 shares
---------------------------- The

RISK FACTORS

An investment in our common stock involves a number of shares outstanding does not include (i) 106,754 shares that will be issued upon the exercise of outstanding warrants, (ii) 261,904 shares of stock held in treasury and (iii) shares that we could issue under our employee stock option plan. Asrisks. Before making an investment decision, you should carefully consider all of the daterisks and other information described in this Prospectus. The risks discussed in this Prospectus could materially adversely affect our business, financial condition and results of this prospectus, we have outstanding options to purchase 4,034,881 shares of common stock at exercise prices ranging from $5.00 to $13.00 per share. We may issue options to acquire up to 1,774,150 additional sharesoperations and cause the trading price of our common stock underto decline significantly. If this plan. ---------------------------- 3 SUMMARY CONSOLIDATED HISTORICAL FINANCIAL DATA The summary consolidated historicaloccurs, you may lose all or part of your investment.

Risks Relating to Our Business

We may not have adequate financial data forresources to execute our 1997, 1998business plan.

At October 31, 2005, we had cash and 1999 fiscal yearscash equivalents and for the nine months endedshort-term investment of $6.68 million. While we believe that existing sources of liquidity are sufficient to meet expected cash needs through 2006, we have experienced recurring net losses and have an accumulated deficit totaling $110.88 million at September 30, 19992005 and 2000 is derivedhave historically relied upon cash flows from our consolidated financial statementsinvesting and financing activities to offset significant cash outflows from operating activities. To the extent necessary, we believe that we can manage costs and expenses at reduced levels to conserve working capital. The need for these periods. The unaudited statements of operations data for the nine months ended September 30, 2000, may not be indicative of the results of operations for a full year. You should read this summary data along with "Management's Discussionany such cost and Analysis of Financial Condition and Results of Operations," our consolidated financial statements and notes thereto and the unaudited pro forma financial information and notes thereto, included elsewhere in this prospectus.
NINE MONTHS ENDED YEAR ENDED DECEMBER 31, SEPTEMBER 30, ------------------------------ ------------------- 1997 1998 1999 1999 2000 -------- -------- -------- -------- -------- (IN THOUSANDS, EXCEPT PER SHARE DATA) STATEMENTS OF OPERATIONS DATA: Net sales.................................... $11,577 $18,935 $23,035 $16,903 $18,786 Gross profit................................. 5,241 9,345 10,945 7,863 9,384 Operating expenses........................... 8,459 11,320 17,829 12,671 16,804 Loss from operations......................... (3,218) (1,975) (6,884) (4,808) (7,420) Net loss..................................... $(2,410) $(1,576) $(9,827) $(7,428) $(8,289) ======= ======= ======= ======= ======= Basic and diluted loss per share............. $ (0.22) $ (0.13) $ (0.76) $ (0.57) $ (0.55) ======= ======= ======= ======= ======= Basic and diluted weighted average shares outstanding................................ 11,145 12,279 13,000 13,000 15,022 ======= ======= ======= ======= =======
AS OF AS OF DECEMBER 31, SEPTEMBER 30, ------------------- -------------- 1998 1999 2000 -------- -------- -------------- (IN THOUSANDS) BALANCE SHEET DATA: Total assets.............................................. $14,736 $19,964 $83,461 Long-term debt, less current portion...................... 695 12,538 -- Stockholders' equity (deficit)............................ 6,649 (2,099) 76,593
4 SUMMARY UNAUDITED PRO FORMA FINANCIAL DATA The following summary unaudited pro forma statements of operations data for the nine months ended September 30, 2000 and the year ended December 31, 1999 reflects the sale of assets related to our non-life sciences instrument product line on May 19, 2000 as if the sale had occurred on January 1, 1999. The unaudited pro forma financial data are intended for informational purposes only and are not intended to be indicativeexpense reductions would likely delay implementation of our results of operations had this transaction occurred on the date specified, nor are they indicative ofbusiness plan. Ultimately, we must achieve sufficient revenues in order to generate positive net earnings and cash flows from operations. However, we cannot assure you that we will be able to increase our future results of operations. You should read this summary along with our consolidated financial statements and notes thereto, our unaudited pro forma financial information and notes thereto, "Management's Discussion and Analysis of Financial Condition and Results of Operations" included elsewhere in this prospectus.
NINE MONTHS ENDED SEPTEMBER 30, 2000 --------------------------------------------- ADJUSTMENTS FOR SALE OF NON-LIFE SCIENCES TRANSGENOMIC INSTRUMENT TRANSGENOMIC (HISTORICAL) PRODUCT LINE PRO FORMA ------------ --------------- ------------ (IN THOUSANDS, EXCEPT PER SHARE DATA) STATEMENT OF OPERATIONS DATA: Net sales......................................... $18,786 $2,171 $16,615 Gross profit...................................... 9,384 738 8,646 Operating expenses................................ 16,804 1,408 15,396 Loss from operations.............................. (7,420) (670) (6,750) Other expense..................................... (869) -- (869) Loss before income taxes.......................... (8,289) (670) (7,619) Net loss.......................................... $(8,289) $ (670) $(7,619) ======= ====== ======= Basic and diluted loss per share........................................... $ (0.55) $ (0.51) ======= ======= Basic and diluted weighted average shares outstanding..................................... 15,022 15,022 ======= =======
5
YEAR ENDED DECEMBER 31, 1999 --------------------------------------------- ADJUSTMENTS FOR SALE OF NON-LIFE SCIENCES TRANSGENOMIC INSTRUMENT TRANSGENOMIC (HISTORICAL) PRODUCT LINE PRO FORMA ------------ --------------- ------------ (IN THOUSANDS, EXCEPT PER SHARE DATA) STATEMENT OF OPERATIONS DATA: Net sales......................................... $23,035 $8,794 $ 14,241 Gross profit...................................... 10,945 3,869 7,076 Operating expenses................................ 17,829 3,576 14,253 (Loss) income from operations..................... (6,884) 293 (7,177) Other expense..................................... (1,198) -- (1,198) (Loss) income before income taxes................. (8,082) 293 (8,375) Net (loss) income................................. $(9,827) $ 293 $(10,120) ======= ====== ======== Basic and diluted loss per share........................................... $ (0.76) $ (0.78) ======= ======== Basic and diluted weighted average shares outstanding..................................... 13,000 13,000 ======= ========
6 RISK FACTORS YOU SHOULD CONSIDER CAREFULLY THE FOLLOWING RISK FACTORS AND ALL OTHER INFORMATION CONTAINED IN THIS PROSPECTUS BEFORE PURCHASING OUR COMMON STOCK. INVESTING IN OUR COMMON STOCK INVOLVES A HIGH DEGREE OF RISK. ANY OF THE FOLLOWING RISKS COULD HARM OUR BUSINESS, FINANCIAL CONDITION AND RESULTS OF OPERATIONS AND COULD RESULT IN A COMPLETE LOSS OF YOUR INVESTMENT. RISKS RELATED TO OUR BUSINESS OUR LIMITED OPERATING HISTORY AS A COMPANY FOCUSED ON LIFE SCIENCES TECHNOLOGIES AND APPLICATIONS SUBJECTS US TO RISKS INHERENT IN THE DEVELOPMENT OF A NEW BUSINESS ENTERPRISE AND TO THE RISK THAT WE MAY NOT ACHIEVE PROFITABILITY. revenues.

We have a limitedhistory of operating history as a company focused on life sciences technologieslosses and applications and are at a relatively early stage of development in this business. Our future financial performance will depend on the growth in demand for automated DNA separation and analysis enabling technologies. The genomics market is new and emerging, is rapidly evolving, is characterized by an increasing number of market entrants, and will be subject to frequent and continuing changes in standards, customers' preferences and technology. As a result, our business is subject to all of the risks inherentmay incur losses in the development of a new business enterprise, such as the need: - to develop a market for our products; - to obtain enough capital to support the expenses of developing and commercializing our products; and - to attract and retain qualified management, sales, technical and scientific staffs. future.

We expect that it will be a number of years, if ever, before we will achieve profitability from the sale of our products. Our future operating results will depend on a number of factors, including the market acceptance of our products, the introduction of new products by our competitors, our ability to adapt our technology to the commercial needs of our customers and to developments in the genomics industry, and the timing and extent of our research and development efforts. Our limited operating history in the life sciences industry makes accurate prediction of future operations difficult. If our operating results fail to meet the expectations of securities analysts or investors, our stock price could decline. WE HAVE A HISTORY OF OPERATING LOSSES AND EXPECT TO INCUR LOSSES IN THE FUTURE. Wehave experienced losses from operations since inception of $8.3our operations. Our loss from operations for the years ended December 31, 2004, 2003 and 2002 were $29.06 million, during$22.59 million and $21.70 million, respectively, and for the first nine months ended September 30, 2000, $6.9 million in fiscal 1999, $2.0 million in fiscal 1998 and $3.2 million in fiscal 1997.of 2005 were $1.86 million. These losses were mostlyhave been due principally to the high levels of research and development expenses and sales and marketing expenses related to the development and marketing of our WAVE System. Inthat we have incurred in order to develop and market our products, restructuring charges and impairment charges. In addition, markets for our products have developed more slowly than expected in many cases and may continue to enhance our WAVE System and related products, develop new products, increase the pace of installations and expand our marketing, sales and customer support service staffs, we expect to incur significant increases in our expenses over the next several years.do so. As a result, we could continuemay incur operating losses in the future.

Markets for our products and services may develop slowly.

There are many factors that affect the market demand for our products and services that we cannot control. This is especially true in our Nucleic Acids operating segment where the demand for our products depends to incur lossesa large degree on the success that our customers and potential customers have in developing useful pharmaceutical products based on genetic intervention. A central strategy for our Nucleic Acids operating segment is to sell synthetic nucleic acid products to biopharmaceutical and pharmaceutical companies that are seeking to develop commercially viable genomic-based diagnostic and therapeutic products. We have invested a significant amount of capital into acquiring and developing manufacturing facilities and other assets to allow us to pursue this market. However, this is a new field of commercial development, and many of these biopharmaceutical and pharmaceutical companies are in the forseeable futureearly stages of their efforts to develop genomic-based diagnostics and therapeutics and have encountered difficulties in these efforts. As a result, the demand for our synthetic nucleic acid products is difficult to forecast and may never be profitable. OUR TECHNOLOGY AND PRODUCTS ARE RELATIVELY NEW AND MAY NOT GAIN MARKET ACCEPTANCE AMONG GENOMICS RESEARCHERS. Ourdevelop slowly or sporadically. In addition, we cannot assure you that these companies will not internally develop the chemistries and manufacturing capabilities to produce the products they could buy from us. Demand for our WAVE System is similarly affected by the needs and other automated DNA separationbudgetary resources of research institutions, universities, hospitals and analysis products are relatively new products. Market acceptanceothers who use the WAVE System for genetic-variation research. The WAVE System represents a significant expenditure by these types of

customers and often requires a long sales cycle. If revenues from the sales of our products is dependent upon factors, some of which are not in our control, such as continued growth in the genomics industry, the availability and price of competing 7 products and technologies, the success of our sales efforts, and the acceptance of our product by the academic and research community, such as biologists, geneticists and biochemists, who are more familiar with the existing, traditional methods of DNA separation and analysis. Our products must compete against well-established techniques, such as gel and capillary electrophoresis and sequencing-based technologies. We cannot be certain that our products will replace or compete successfully against existing products or that our products will achieve market acceptance. If our products do not achieve market acceptance,services continue at current levels, we may not achieve profitability. WE WILL NEED TO REFINE OUR WAVE SYSTEM TO ALLOW IT TO MEET THE REQUIREMENTS OF COMMERCIAL USERS. Our WAVE System is relatively new and has been developed primarily for basic genomics research applications. The WAVE System will require significant enhancementsneed to its capacity and software in order for ittake steps to be adapted to commercial applications such as diagnostic research and drug development. The adaptation of the current WAVE System for these commercial applications will requirefurther reduce operating expenses or raise additional research and development work that may be expensive and time-consuming.working capital. We cannot assure you that sales will increase or that we will be able to makereduce operating expenses or raise additional working capital.

Two customers account for a significant portion of sales in our BioSystems and Nucleic Acids operating segments.

During nine months ended September 30, 2005, sales to Geron Corporation (“Geron”) totaled $1.73 million and represented 54%, of net sales within our Nucleic Acids operating segment and 7% of our total consolidated net sales. During the necessary improvementsyear ended December 31, 2004, sales to Geron Corporation totaled $4.15 million and represented 49% of total net sales within our Nucleic Acids operating segment and 12% of total consolidated net sales. Sales to Geron are governed by a supply agreement that does not require Geron to purchase any minimum quantity of our products. Accordingly, the WAVE System for use in commercial applications. Ifamount of nucleic acid products we are unablesell to complete the further development of the WAVE System we may notGeron is subject to change. Revenues from our Nucleic Acids operating segment business would be able to successfully market it for commercial applications and this will limit our future revenues. IF ETHICAL AND OTHER CONCERNS SURROUNDING THE USE OF GENETIC INFORMATION BECOME WIDESPREAD, WE MAY HAVE LESS DEMAND FOR OUR PRODUCTS. Genetic testing has raised ethical issues regarding confidentiality and the appropriate uses of the resulting information. For these reasons, governmental authorities may call for limits on or regulation of the use of genetic testing or prohibit testing for genetic predisposition to disease, particularly for those that have no known cure. Any of these scenarios could reduce the potential marketssubstantially reduced if Geron’s need for our products which could limitdeclined or if it decided to obtain these products from other suppliers.

During the nine months ended September 30, 2005, sales to a large pharmaceutical company totaled $2.0 million and represented 10% of net sales within our future revenues. WE HAVE BioSystems operating segment and 9% of our total consolidated net sales. During the year ended December 31, 2004, sales to this customer totaled $1.66 million and represented 7% of total net sales within our BioSystems operating segment and 5% of total consolidated net sales. Sales to this customer are governed by a non-binding master services agreement that does not require the customer to purchase any minimum quantity of our services. Accordingly, the amount of sales to this customer is subject to change.

Customer clinical trials may be delayed or discontinued.

A LIMITED SALES FORCE AND LIMITED EXPERIENCE WITH DIRECT MARKETING OF OUR PRODUCTS WHICH COULD LIMIT OUR ABILITY TO EFFECTIVELY PENETRATE NEW MARKETS.significant percentage of our Nucleic Acids operating segment and discovery services revenues are generated by sales to customers involved in drug development. Our direct sales force may not be sufficiently large or knowledgeable to successfully penetrate the market. We may not be able to expand our direct sales force to meet our commercial objectives. In addition, our sales force may not be able to address complex scientificproducts and technical issues raisedservices are generally used by our customers. Our customer support personnel may also lack the broad range of technical expertise required to adequately service and support our productsthese customers in the field. THE SALE OF OUR PRODUCTS INVOLVES A LENGTHY SALES CYCLE WHICH MAKES OUR REVENUES DIFFICULT TO FORECAST. Our ability to obtain customers for our WAVE System and related accessories dependsmanufacture of drug candidates in large partvarying stages of clinical trials. If these clinical trials are delayed or cancelled or are otherwise not successful, this could have a significant impact on the perception that our products can help accelerate basic genomics research, diagnostic testing and related applications such as drug discovery and development efforts. A WAVE System sells for between $60,000 to $100,000 depending on its features and accessories. For many potential customers, who are often constrained by limited research budgets, this will be a large capital outlay. Additionally,revenues we generate from the sales cycle is often three to six months long due to the need to educate potential customers as to the benefits and use of our WAVE System. We also need to effectively communicate the benefits of our WAVE System to a variety of constituencies within potential customer groups, including research and development personnel and key management. We may expend substantial funds and sales effort with no assurance that athese products.

The sale will result. Due to the lengthy sales cycle required, our revenues could be difficult to forecast. 8 OUR BUSINESS MAY EXPERIENCE LONG COLLECTION PERIODS WHICH COULD HAVE A NEGATIVE IMPACT ON OUR LIQUIDITY. We have experienced in the past, and may experience in the future, collection periods of up to a year or more in connection with sales of our WAVE System. Some customers delay payment due to the large capital outlay associated with a purchase of the WAVE System. Other clients in the academic and research fields are accustomed to longer payment periods than commercial buyers. In general, our overseas customers pay less promptly than is customary in the United States. In addition, because we are in the early stages of commercialization of the WAVE System, we sometimes agree to provide extended payment terms in order to make a sale. Our typical accounts receivable terms are 30 to 60 days. Longer collection periods may have a negative impact on our liquidity. As of September 30, 2000, our accounts receivable equaled $5.5 million. Balances subject to extended terms were approximately $251,000, of which approximately $66,000 was due more than 1 year from September 30, 2000. WE MAY NEED TO RAISE ADDITIONAL FUNDING WHICH MAY NOT BE AVAILABLE. To date, we have financed our operations primarily from the proceeds of a $77.3 million public offering of common stock, a $10,000,000 private offering of common stock, a $12,000,000 issuance of convertible notes and borrowings under our $5 million bank line of credit. We will continue to need substantial amounts of cash for research and development and to expand our sales and marketing infrastructure. We expect our capital and operating expenses to increase over the next several years as we expand this infrastructure and our research and development activities. The amount of additional capital which we will need to raise will depend on many factors, including: - the level of our research and development activities; - market acceptance of our products and technologies; -business operations in international markets subjects us to additional risks.

During the levellast three fiscal years, our international sales have been approximately 55-65% of our net sales. As a result, a major portion of our revenues and expenses are subject to risks associated with international sales and marketing expenses; - expendituresoperations. These risks include:

payment cycles in connection with alliances and license agreements and in acquiring new businesses and technologies; - costs incurred in enforcing and defending our patent claims and other intellectual property rights; and - the cost of financing the purchase of additional capital equipment and development tools. We may need to raise the additional capitalforeign markets are typically longer than in the future through bank financingsU.S., and capital spending budgets for research agencies can vary over time with foreign governments;

changes in foreign currency exchange rates can make our products more costly and operating expenses higher in local currencies since our foreign sales and operating expenses are typically paid for in U.S. Dollars, British Pounds or strategic investments. Additional financing may not be availablethe Euro; and

the potential for changes in U.S. and foreign laws or regulations that result in additional import or export restrictions, higher tariffs or other taxes, more burdensome licensing requirements or similar impediments to us whenour ability to sell products and services profitably in these markets.

Our WAVE System includes hardware components and instrumentation manufactured by a single supplier and if we need it, or, if available, we cannot assure that we will beare no longer able to obtain such financing on terms favorablethese components and instrumentation our ability to us ormanufacture our stockholders. If we raise additional capital by issuing equity securities, the issuance of such securities would result in ownership dilution to our stockholders. OUR WAVE SYSTEM INCLUDES HARDWARE COMPONENTS AND INSTRUMENTS MANUFACTURED BY A SINGLE SUPPLIER AND IF WE WERE NO LONGER ABLE TO OBTAIN THESE COMPONENTS AND INSTRUMENTS OUR ABILITY TO MANUFACTURE OUR PRODUCTS COULD BE IMPAIRED. products could be impaired.

We currently rely on a single supplier, Hitachi Instruments, Inc.,High Technologies America, to provide the basic instrument used in our WAVE System.Systems. While other suppliers of instrumentation and computer hardware are available, we believe that our arrangement with Hitachi offers strategic advantages. Hitachi is replacing its current instrument line with a new instrument line. While we presently plan to convert our technology and applications to this new instrument line, such conversion may not be successful and, therefore, we may incur additional costs for the custom manufacturing of the current instrument line. If we were required to seek alternative sources of supply, it could be time consuming or expensive or require significant and costly modification of our WAVE System. Also, if we were unable to obtain instruments from Hitachi in sufficient quantities or in a timely manner, our ability to manufacture our products could be impaired, which could limit our future revenues. 9 OUR CHROMATOGRAPHIC COLUMNS, A CORE COMPONENT OF THE WAVE SYSTEM, ARE MANUFACTURED AT A SINGLE FACILITY WHICH IS LOCATED IN AN EARTHQUAKE-PRONE AREA. All

We may not have adequate personnel to execute our business plan.

In order to reduce our operating costs, we have significantly reduced the number of employees, including reductions in our proprietary DNASep columns are manufactured atresearch and development staff and our manufacturing facility in San Jose, California, which is located in an earthquake-prone area. In the event our manufacturing facility or equipment was affected by man-made or natural disasters, we would be unable to manufacture our products for sale or meet customer demand or sales projections. If our manufacturing operations were curtailed or ceased for any significant period of time, it could limit our future revenues. WE FACE, AND WILL CONTINUE TO FACE, INTENSE COMPETITION, BOTH IN THE U.S. AND ABROAD, FROM COMPANIES THAT ARE ENGAGED IN THE DEVELOPMENT OF PRODUCTS THAT ANALYZE DNA AND PROVIDE GENETIC INFORMATION. The market for our products is highly competitive. Our principal competitors include other biotechnology companies that provide alternative technologies and products for the separation and analysis of DNA. Many of our competitors have greater financial, operational, sales and marketing resourcespersonnel. In addition, we may lose other key management, scientific, technical, sales and more experience in research and development and commercialization than we have. Moreover, some of our competitors have greater name recognition than we do and provide more conventional technologies and products with which some of our customers and potential customersmanufacturing personnel from time to time. It may have more familiarity or experience. In orderbe very difficult to effectively compete against alternative technologies we will need to demonstrate the superior performance, speed, capabilities and cost effectiveness of our WAVE System. The genomics industry is characterized by extensive research efforts and rapid technological progress. To remain competitive, we will be required to continue to expand and enhance the functionality of our DNA separation and analysis equipment and to offer comprehensive DNA analysis, and complimentary applications and solutions, with greater ease of use. This will include the need to increase the WAVE System's capacity and to develop new instrumentation, software and application kits to allow the system to provide a broader range of DNA and RNA separation and analysis applications. New products may require additional development work, enhancement, testing, or further refinement beforereplace personnel if they can be made commercially available and, therefore, we could experience significant delaysare needed in the developmentfuture, and manufacturethe loss of key personnel could harm our products. Even after new products are made commercially available, unforeseen technical difficulties could arise, requiring additional expenditures by us to correct such difficultiesbusiness and possibly resulting in further delays.operating results. We cannot be certain that new products will be successfully developed at all. If our products have performance, reliability or quality shortcomings, then we may experience reduced orders, higher development costs, delays in collecting accounts receivable and additional warranty and service expenses, and our reputation as a reliable provider of quality products could be harmed. In addition, new developments are expected to continue in DNA analysis, and we cannot assure you that our WAVE Systememployee reductions will not be made obsolete by more effective or less expensive technologies. Because of rapid technological change, we may be requiredimpair our ability to expend greater amounts in the development ofcontinue to develop new products whichand refine existing products in turn will requireorder to remain competitive. In addition, these reductions could prevent us from successfully marketing our products and developing our customer base.

Our markets are very competitive.

As described above, we compete with many other companies in both our Biosystems and Nucleic Acids operating segments. Many of these competing companies have greater revenuesresources than we do or may enjoy other competitive advantages. This may allow them to recoup such expenditures. We cannot assure you that we will be able to make the necessary enhancementsmore effectively market their products to our technologycustomers or potential customers, to develop products that make our products obsolete or to compete successfully with new technologies that may emerge. WE RECENTLY SOLD THE ASSETS RELATED TO OUR NON-LIFE SCIENCES INSTRUMENT PRODUCT LINE WHICH HAVE HISTORICALLY GENERATED MOST OF OUR REVENUES AND EARNINGS. In addition to our DNA separationproduce and analysissell products we have produced and sold various non-life sciences products. Until 1999, most of our revenues and profits came from these non-life sciences products. We have decided to focus our resources on our new automated DNA separation and analysis products and technologies and during the second quarter of 2000 we sold the assets related to our non-life sciences product line.less expensively than us. As a result we will no longer generate revenues from the sale of these products. The future growthcompetitive factors, demand for and pricing of our company will be entirely dependent on the sale of our WAVE 10 System and associated DNA separation products and technologies. You should keep this fact in mind when reviewingservices could be negatively affected.

Our patents may not protect us from others using our financial statements. Because of the change intechnology that could harm our product offerings, our historic financial statements will not necessarily indicate our future financial performance. OUR PATENTS MAY NOT PROTECT US FROM OTHERS USING OUR TECHNOLOGY WHICH COULD HARM OUR BUSINESS AND COMPETITIVE POSITION. Our business and competitive position are dependent upon our ability to protect our proprietary technology. While we currently hold a number of domestic and foreign patents and licenses, the issuance of a patent is not conclusive as to its validity or enforceability, nor does it provide the patent holder with freedom to operate without infringing the patent rights of others. Our patents or licenses could be challenged by litigation and, if the outcome of such litigation were adverse to us, our competitors could be free to use our technology. As a result, the invalidation of key patents owned by or licensed to us or non-approval of pending patent applications could increase competition for our products. We may not be able to obtain additional patents for our technology, or if we are able to do so, patents may not provide us with substantial protection or be commercially beneficial. Our patent applications may not protect our products because of the following reasons: - we cannot be certain that any of our pending patent applications will result in additional issued patents; - we may develop additional proprietary technologies that are not patentable; - we cannot be certain that any patents issued or licensed to us will provide a basis for commercially viable products; - we cannot be certain that any patents issued or licensed to us will not be challenged or circumvented or invalidated by third parties; and - we cannot be certain that any patents issued to others will not have an adverse effect on our ability to do business. position.

Patent law relating to the scope of claims in the technology fields in which we operate is still evolving. The degree of future protection for our proprietary rights is uncertain. Furthermore, we cannot be certain that others will not independently develop similar or alternative products or technology, duplicate any of our products, or, if patents are issued to us, design around the patented products developed by us. Our patents or licenses could be challenged by litigation and, if the outcome of such litigation were adverse to us, our competitors could be free to use our technology. We may not be able to obtain additional patents for our technology, or if we are able to do so, patents may not provide us with substantial protection or be commercially beneficial. In addition, we could incur substantial costs in litigation if we are required to defend ourselves in patent suits brought by third parties or if we initiate such suits. WE CANNOT BE CERTAIN THAT OTHER MEASURES TAKEN TO PROTECT OUR INTELLECTUAL PROPERTY WILL BE EFFECTIVE.

We cannot be certain that other measures taken to protect our intellectual property will be effective.

We rely upon trade secret protection, copyright and trademark laws, non-disclosure agreements and other contractual provisions for some of our confidential and proprietary information that is not subject matter for which patent protection is being sought. Such measures, however, may not provide adequate protection for our trade secrets or other proprietary information. If theysuch measures do not protect our rights, third parties could use our technology and our ability to compete in the market would be reduced. While we require employees, academic collaborators

We are dependent upon our licensed technologies and consultantsmay need to enter into confidentiality and/or intellectual property assignments where appropriate, any ofobtain additional licenses in the following could still occur: - proprietary information could be disclosed or others may gain accessfuture to such information; - others may independently develop substantially equivalent proprietary informationoffer our products and techniques; 11 - we may not have adequate remedies for any breach; or - we may not be able to meaningfully protect our trade secrets. WE ARE DEPENDENT UPON OUR LICENSED TECHNOLOGIES AND MAY NEED TO OBTAIN ADDITIONAL LICENSES IN THE FUTURE TO OFFER OUR PRODUCTS AND REMAIN COMPETITIVE. remain competitive.

We have acquired or licensed key components of our technologies from third parties. If these agreements were to terminate prematurely or if wedue to our breach of the terms of anythese licenses or we otherwise fail to maintain our rights to such technology, we may lose the right to manufacture or sell a substantial portion of our products. In addition, we may need to obtain licenses to additional technologies in the future in order to keep our products competitive. If we fail to license or otherwise acquire necessary technologies, we may not be able to develop new products that we need to remain competitive. THE PROTECTION OF INTELLECTUAL PROPERTY IN FOREIGN COUNTRIES IS UNCERTAIN. We

The patent underlying our nonexclusive license to manufacture standard nucleic acid building blocks expired as of March 15, 2005. The expiration of this patent could result in additional manufacturers entering the market for these products. Some of these manufacturers may have sold approximately 50%lower cost structures or other competitive advantages which may reduce our market share and/or our operating margins related to these products.

The protection of intellectual property in foreign countries is uncertain.

A significant percentage of our WAVE Systemssales are to customers located outside the U.S. The patent and other intellectual property laws of some foreign countries may not protect our intellectual property rights to the same extent as U.S. laws. We may need to bring proceedings to defend our patent rights or to determine the validity of our competitors'competitors’ foreign patents. These proceedings could result in substantial cost and diversion of our efforts. Finally, some of our patent protection in the U.S. is not available to us in foreign countries due to the laws of those countries. OUR PRODUCTS COULD INFRINGE ON THE INTELLECTUAL PROPERTY RIGHTS OF OTHERS WHICH COULD REQUIRE US TO PAY SUBSTANTIAL ROYALTIES.

Our products could infringe on the intellectual property rights of others.

There are a significant number of U.S. and foreign patents and patent applications submitted for technologies in, or related to, our area of business. As a result, any application or exploitation of our technology could infringe patents or proprietary rights of others and any licenses that we might need as a result of such infringement might not be available to us on commercially reasonable terms, if at all. This may lead others to assert patent infringement or other intellectual property claims against us. We may have

Our failure to pay substantial damages, including treble damages, for past infringement if it is ultimately determined that our products infringe on another party's intellectual property rights. We could also be prohibited from selling our products before we obtain a license, which, if available at all, may require uscomply with any applicable government regulations or otherwise respond to pay substantial royalties. Even if a claim is without merit, defending a lawsuit takes significant time, may be expensive and may divert management attention from other business concerns. Any public announcements relatedclaims relating to litigationimproper handling, storage or interference proceedings initiated or threatened against us could cause our stock price to decline. WE DEPEND ON ATTRACTING AND RETAINING KEY EMPLOYEES. We are highly dependent on the principal membersdisposal of our management staff and research and development group, including Collin J. D'Silva, our Chief Executive Officer. We have entered into employment agreements with Mr. D'Silva and other executive officers, but not with all of our other key employees. The loss of services of any of these individuals could seriously harm our product development and commercialization efforts for our new life sciences products. Our future success will also depend on our ability to attract, hire and retain additional personnel, including sales and marketing personnel, technical support and customer service staff and application scientists. There is intense competition for qualified personnel in our industry, especially for experienced personnel in the areas of chemistry and molecular biology, software and electric engineering, manufacturing and marketing, and there can be no assurancehazardous chemicals that we will be able to continue to attract and retain such personnel. Failure to attract and retain key personnel could reduce 12 our ability to continue development of our DNA separation and analysis technology and to successfully market our products. WE WILL NEED TO EFFECTIVELY MANAGE OUR GROWTH IF WE ARE TO SUCCESSFULLY IMPLEMENT OUR STRATEGY. The number of employees and scope of our business operations are expected to grow as we continue the commercialization of our WAVE System. This growthuse may place a strain on our management and operations. Our ability to manage our growth will depend on the ability of our officers and key employees to continue to implement and improve our operational, management information and financial control systems and to expand, train and manage our work force both in the U.S. and abroad. We may be required to open non-U.S. offices in addition to our current U.K., Japan and satellite European offices, which could result in additional burdens on our systems and resources. Our inability to manage our growth effectively couldadversely affect our ability to pursue business opportunities and expand our business. OUR FAILURE TO COMPLY WITH ANY APPLICABLE GOVERNMENT REGULATIONS OR OTHERWISE RESPOND TO CLAIMS RELATING TO IMPROPER HANDLING, STORAGE OR DISPOSAL OF HAZARDOUS CHEMICALS WHICH WE USE MAY ADVERSELY AFFECT OUR RESULTS OF OPERATIONS. results of operations.

Our research and development and manufacturing activities involve the controlled use of hazardous materials and chemicals, including acetonitrile.chemicals. We are subject to federal, state, local and localinternational laws and regulations governing the use, storage, handling and disposal of hazardous materials and waste products. If we fail to comply with applicable laws or regulations, we could be required to pay penalties or be held liable for any damages that result and this liability could exceed our financial resources. We cannot

assure you that accidental contamination or injury will not occur. Any such accident could damage our research and manufacturing facilities and operations, resulting in delays and increased costs. RISKS RELATED TO THIS OFFERING WE ARE CONTROLLED BY A SMALL GROUP OF OUR EXISTING STOCKHOLDERS, WHOSE INTERESTS MAY DIFFER FROM OTHER STOCKHOLDERS.

Risks Relating To This Offering and Ownership of Our directors, executive officersCommon Stock

The price for our common stock is volatile and principal stockholders and their affiliates beneficially own approximately 50%may drop.

The trading price for our common stock has fluctuated significantly over recent years. The volatility in the price of our outstandingstock is attributable to a number of factors, not all of which relate to our operating results and financial position. Nevertheless, continued volatility in the market price for our stock should be expected and we cannot assure you that the price of our stock will not decrease in the future. Fluctuations or further declines in the price of our stock may affect our ability to sell shares of our stock and to raise capital through future equity financing.

If we are unable to maintain our Nasdaq listing, your ability to trade shares of our common stock could suffer.

In order for our common stock to remain listed on the Nasdaq National Market (“Nasdaq”), we must meet the minimum listing requirements for continued listing, including, among other requirements, minimum bid price and market value of public float requirements. If our common stock is delisted from the Nasdaq, transactions in our common stock would likely be conducted only in the over-the counter market, or potentially on regional exchanges, which could negatively impact the trading volume and price of our common stock, and investors may find it more difficult to purchase or dispose of, or to obtain accurate quotations as to the market value of, our common stock. Accordingly, they collectively will have a significant influence in determiningIn addition, if our common stock were not listed on the outcome of any corporate transaction or other matter submitted to the stockholders for approval, including mergers, acquisitions, consolidationsNasdaq and the sale of all or substantially alltrading price of our assets,common stock remains below $5.00 per share, trading in our common stock would also be subject to certain rules that require additional disclosures by broker-dealers in connection with any trades involving a “penny stock.” In such event, the additional burdens imposed on broker-dealers to effect transactions in our common stock could further limit the market liquidity of our common stock and the ability of investors to trade our common stock.

We may issue a substantial amount of our common stock to holders of options and warrants and this could reduce the market price for our stock.

We also the powerhad obligations to prevent or cause a change in control.issue 13,603,592 shares of common stock under outstanding stock options and warrants. The interestsissuance of these stockholdersadditional shares of common stock may differ from the interests of the other stockholders. PROVISIONS IN OUR CHARTER MAY INHIBIT A TAKEOVER, WHICH COULD LIMIT THE PRICE INVESTORS MIGHT BE WILLING TO PAY IN THE FUTURE FOR OUR COMMON STOCK. Provisions inbe dilutive to our certificate of incorporationcurrent shareholders and bylaws may have the effect of delaying or preventing a change in control or changes in our management that stockholders consider favorable or beneficial. If a change of control or change in management is delayed or prevented,could negatively impact the market price of our common stock could decline. 13 OUR STOCK PRICE HAS BEEN VOLATILE AND YOUR INVESTMENT COULD SUFFER A DECLINE IN VALUE, WHICH IN TURN COULD AFFECT OUR ABILITY TO RAISE ADDITIONAL CAPITAL TO FUND THE COMMERCIALIZATION OF OUR PRODUCTS. The trading price of our common stock has been volatile and subject to large fluctuations in price in response to various factors, many of which will be beyond our control. These factors include: - actual or anticipated variations in quarterly operating results; - announcements of technological innovations by us or our competitors; - new products or services introduced or announced by us or our competitors; - changes in financial estimates by securities analysts; - conditions or trends in the biotechnology, pharmaceutical and genomics industries; - announcements by us of significant acquisitions, strategic partnerships, joint ventures or capital commitments; or - additions or departures of key personnel. The market price of our common shares could also decline as a result of salesstock.

Sales of substantial amounts of our common stock in the public market or the perception that substantial sales could occur. These sales also might make it difficult for us to sell equity securities in the future at a time and at a price that we deem appropriate. See "Shares Eligible for Future Sale." In addition, the stock market in general, and the Nasdaq National Market and the market for technology companies in particular, has recently experienced extreme price and volume fluctuations that have often been unrelated or disproportionate to the operating performance of those companies. Further, there has been particular volatility in the market prices of securities of biotechnology and life sciences companies. These broad market and industry factors may seriously harmadversely affect the market price of our common stock.

At November 29, 2005, we have 49,172,079 shares of common stock regardlessoutstanding. All but 13,972,384 shares held by affiliates of the Company are freely tradable without restriction or further registration under the Securities Act. Shares held by affiliates may also be sold subject only to the requirements of Rule 144 under the Securities Act. The sale of these shares in the public markets has potential to cause significant downward pressure on the price of our operating performance. Incommon stock. This is particularly the past, following periodscase if the shares being placed into the market exceed the market’s ability to absorb the stock. Such an event could place further downward pressure on the price of volatilityour common stock. This presents an opportunity for short sellers to contribute to the further decline of our stock price. If there are significant short sales of our stock, the price decline that would result from this activity will cause the share price to decline more so, which, in turn, may cause long holders of the stock to sell their shares thereby contributing to sales of stock in the market.

The price you pay for shares offered by the selling stockholders may be higher than the prices paid by other people acquiring such shares.

Selling stockholders may sell shares under this Prospectus from time to time either at prices then prevailing in the market or at other prices they negotiate with buyers. Accordingly, the price of a company's securities, securities class-action litigation has often been instituted against that company. Such litigation, if instituted against us, could result in substantial costs and a diversion of management's attention and resources. WE HAVE NEVER PAID DIVIDENDS ON OUR CAPITAL STOCK AND DO NOT INTEND TO DO SO FOR THE FORSEEABLE FUTURE. Unlike many public companies, we have never paid dividends on our capital stock and do not intend toyou pay any dividends for the foreseeable future. We have agreed not to pay dividends without the consentshares of our lenders. Investors seeking dividends or other current distributions should not invest in our common stock. See "Dividend Policy." 14 FORWARD-LOOKING STATEMENTS We have made forward-looking statements in this prospectus that are subject to risks and uncertainties. Many of these forward-looking statements refer to our plans, objectives, expectations and intentions, as well as our future financial results. You can identify these forward-looking statements by forward-looking words such as "expects," "anticipates," "intends," "plans," "may," "will," "believes," "seeks," "estimates" and similar expressions. Because these forward-looking statements involve risks and uncertainties, there are important factors that could cause our actual results to differ materially from those expressed or implied by these forward-looking statements, including our plans, objectives, expectations and intentions and other factors discussed under "Risk Factors" and other factors identified by cautionary language used elsewhere in this prospectus. Before you invest in our common stock you shouldpurchase from a selling stockholder may be aware thathigher than the occurrenceprices paid by other people acquiring such shares.

USE OF PROCEEDS

We will not receive additional proceeds from the sale of the events describedShares offered by this Prospectus. However, we have already received net proceeds (after transaction costs of $1.18 million) of $13.90 million in conjunction with the 2005 Private Placement. These proceeds were partially used to repay all outstanding principal and accrued interest on our Laurus Loans including fees to facilitate the private placement and prepayment penalties to Laurus in the sum of $0.82 million. The remaining proceeds of $5.35 million will be used for future working capital needs. We also received proceeds of $2.05 million in conjunction with the private placement that we closed in the fourth quarter of 2003. Additionally, we may receive approximately $10.49 million upon the exercise of warrants for the remaining 8,062,577 Shares that may be offered hereby. The net proceeds we receive from any exercise of these risk factors and elsewhere in this prospectus could materially and adversely affect our business, financial condition and results of operations. warrants, if any, will be used by us primarily for working capital purposes.

PRICE RANGE OF COMMON STOCK AND DIVIDEND POLICY Since July 17, 2000, the date of our initial public offering, our

Our common stock has been tradedis listed for trading on the Nasdaq National Market under the symbol TBIO. The following table sets forth the high and low salesclosing prices for our common stock forduring each of the third and fourth calendar quarters of 2000. Prior to July 17, 2000,2003 and 2004 and through November 29, 2005

   High

  Low

Year Ended December 31, 2003

        

First Quarter

  $4.22  $1.40

Second Quarter

  $2.43  $0.93

Third Quarter

  $2.14  $1.03

Fourth Quarter

  $2.98  $1.45

Year Ended December 31, 2004

        

First Quarter

  $3.23  $1.96

Second Quarter

  $1.87  $1.24

Third Quarter

  $1.58  $1.07

Fourth Quarter

  $1.52  $1.06

Year Ending December 31, 2005

        

First Quarter

  $1.11  $0.53

Second Quarter

  $0.90  $0.45

Third Quarter

  $1.24  $0.70

Fourth Quarter (through November 29, 2005)

  $1.02  $0.80

At November 29, 2005, there was no public market for our common stock.
YEAR ENDED DECEMBER 31, 2000 HIGH LOW - ---------------------------- -------- -------- Third Quarter (July 17-September 30, 2000)................ $30.016 $ 15.75 Fourth Quarter............................................ $ 23.00 $ 5.75
On December 31, 2000, there were approximately 2,500 holdersare 49,172,079 shares of our common stock. stock outstanding and approximately 3,475 holders of record.

We have never declared or paid any cash dividends on our capitalcommon stock and we do not anticipate paying any cash dividends on our common stock in the foreseeable future. We currently expect to retain all earnings, if any, for investment in our business. In addition, the terms of our current credit facility prohibits us from paying cash dividends without our lender's consent. Dividends on our common stock will be paid only if and when declared by our boardBoard of directors.Directors. The board'sBoard’s ability to declare a dividend is subject to limits imposed by Delaware corporate law. In determining whether to declare dividends, the boardBoard may consider our financial condition, results of operations, working capital requirements, future prospects and other relevant factors. 15

SELECTED CONSOLIDATED FINANCIAL DATA

The statementfollowing selected consolidated financial data should be read together with “Management’s Discussion and Analysis of Financial Condition and Results of Operations” and our consolidated financial statements and related notes included elsewhere in this Prospectus. The selected consolidated balance sheet data at December 31, 2004 and 2003 and the selected consolidated statements of operations data for the yearseach year ended December 31, 1997, 19982004, 2003 and 1999 and the balance sheet data as of December 31, 1998 and 1999 are2002 have been derived from our historicalaudited consolidated financial statements and notes theretothat are included elsewhere in this prospectus, which have been audited by Deloitte & Touche LLP, independent auditors.Prospectus. The statementselected consolidated balance sheet data at December 31, 2002, 2001 and 2000 and the selected consolidated statements of operations data for the yearseach year ended December 31, 19952001 and 1996 and the balance sheet data as of December 31, 1995, 1996 and 1997 are derived from our audited historical consolidated financial statements which are not included in this prospectus. The statement of operations data for the nine months ended September 30, 1999 and 2000 and the balance sheet data as of September 30, 2000 have been derived from our unauditedaudited consolidated financial statements that are not included elsewhere in this prospectus.Prospectus. The unauditedselected consolidated balance sheet data at September 30, 2005 and the selected consolidated statements of operations data for the nine months ended September 30, 2000, may2005 and 2004 are derived from our unaudited condensed consolidated financial statements included in this Prospectus. The unaudited condensed consolidated financial statements include, in the opinion of management, all adjustments that management considers necessary for the fair presentation of the financial information set forth in those statements. Historical results are not benecessarily indicative of the results to be expected in the future. Dollar amounts, except per share data, are presented in thousands.

   Nine Months Ended September 30,

  Year Ended December 31,

 
   2005

  2004

  2004

  2003

  2002

  2001(1)

  2000(1)

 

Statement of Operations Data:

                             

Net sales

  $23,711  $25,834  $33,789  $33,866  $37,554  $38,467  $25,883 

Cost of good sold

   13,609   18,484   24,596   24,315   19,569   17,198   12,800 
   


 


 


 


 


 


 


Gross profit

   10,102   7,350   9,193   9,551   17,985   21,269   13,083 

Selling, general and administrative

   10,023   12,866   17,499   17,324   24,199   21,636   14,908 

Research and development

   1,696   5,344   6,685   9,305   12,201   9,372   7,652 

Restructuring charges(2)

   —     —     3,570   738   3,282   —     —   

Impairment charges(3)

   247   11,964   11,965   4,772   —     —     —   

Gain on sale of facility(4)

   —     —     (1,466)  —     —     —     —   

Gain on sale of product line

   —     —     —     —     —     —     (784)
   


 


 


 


 


 


 


Operating expenses

   11,966   30,174   38,253   32,139   39,682   31,008   21,776 

Other income (expense)(5)

   (1,888)  (4,704)  (5,406)  (305)  437   2,362   212 
   


 


 


 


 


 


 


Loss before income taxes

   (3,752)  (27,528)  (34,466)  (22,893)  (21,260)  (7,377)  (8,481)

Income tax (benefit) expense

   27   (94)  (94)  65   105   24   180 
   


 


 


 


 


 


 


Net loss

  $(3,779) $(27,434) $(34,372) $(22,958) $(21,365) $(7,401) $(8,661)
   


 


 


 


 


 


 


Basic and diluted loss per share

  $(0.12) $(0.95) $(1.19) $(0.94) $(0.91) $(0.33) $(0.52)

Basic and diluted weighted average shares outstanding

   32,837   28,951   29,066   24,484   23,583   22,560   16,630 

   As of
September 30,
2005


  As of December 31,

     2004

  2003

  2002

  2001

  2000

Balance Sheet Data:

                        

Total assets(6)

  $31,789  $37,458  $57,306  $74,035  $89,286  $77,863

Borrowings under credit line

   6,935   6,514   2,142   —     —     —  

Current portion of long-term debt

   675   825   1,693   63   —     —  

Long-term debt, less current portion

   1,226   2,199   —     1,499   —     —  

Total stockholders’ equity

   15,577   16,535   45,058   61,515   82,104   73,966

(1)In May 2001, we acquired Annovis, Inc., a specialty chemicals company that develops, manufactures and markets a wide variety of nucleic acid-based products and services for the life science industry, for a total purchase price of approximately $16,910. Annovis’ results of operations have been included in the accompanying financial statements beginning on May 1, 2001. Additionally, our consolidated financial statements include the results from our non-life sciences product line which was sold effective April 1, 2000.

(2)Restructuring plans were implemented in 2002 and 2004 to reduce and align our expenses with current business prospects. The plans included employee terminations, office closures, termination of collaborations and write-offs of abandoned intellectual property. As a result, restructuring charges were recorded and are included in operating expenses. See Note N to the accompanying consolidated financial statements.

(3)Impairment charges relate primarily to the impairment of goodwill, and in 2004, also include a charge of $2,100 related to the impairment of property and equipment. See Note C to the accompanying consolidated financial statements.

(4)Gain on sale of facility relates to the sale of our specialty olignucleotide manufacturing facility in Boulder, Colorado during the fourth quarter of 2004. See note M to the accompanying consolidated financial statements.

(5)Other income (expense) for all years presented primarily includes interest expense and in 2004 it includes a loss on debt extinguishment of $2,859 resulting from certain modifications to our Laurus Loans that were treated as extinguishments for financial reporting purposes. See Note E to the accompanying consolidated financial statements.

(6)The reduction in total assets from December 31, 2003 to December 31, 2004 related primarily to impairment charges of $11,965 in our Nucleic Acids operating segment (see Notes C and K to the accompanying consolidated financial statements) and the sale of our specialty oligonucleotide manufacturing facility in Boulder, Colorado (see Note M to the accompanying consolidated financial statements). The reduction in total assets from December 31, 2002 to December 31, 2003 related primarily to operating losses that were funded by reductions in cash and cash equivalents and short term investments.

CAPITALIZATION

The following table reflects our capitalization as of operations for a full year. InSeptember 30, 2005 on an actual and as adjusted basis as if the opinion2005 Private Placement and simultaneous repayment of the Laurus Loans had occurred on September 30, 2005.

   As of September 30,

 
   Actual

  As Adjusted

 

Credit Line(1)

  $6,935  $—   

Current portion of Term Note(1)

   675   —   

Term Note, less current portion(1)

   1,226   —   

Stockholders’ equity:

         

Preferred stock, $0.01 par value, 15,000,000 shares authorized, none outstanding

   —     —   

Common stock, $0.01 par value, 60,000,000 shares authorized, 34,246,336 and 49,172,079 shares outstanding, respectively(2)

   348   497 

Additional paid-in capital(1) (2)

   125,058   138,803 

Accumulated other comprehensive income

   1,051   1,051 

Accumulated deficit(3)

   (110,880)  (111,131)
   


 


Total stockholders’ equity

   15,577   29,220 
   


 


Total capitalization

  $24,413  $29,220 
   


 


(1)Net proceeds from the 2005 Private Placement (after transaction costs of $1,180) totaled $13,895 and were used in part to prepay all indebtedness and prepayment fees to Laurus. The remaining proceeds will be used for the future working capital needs of the Company. Transaction costs included fees to Oppenheimer of $1,055 and other transaction specific costs of approximately $125.

(2)Subsequent to September 30, 2005, we issued 14,925,743 shares in conjunction with the 2005 Private Placement. At November 29, 2005, we have 13,603,592 potentially dilutive securities consisting of 5,541,015 options issued under our stock option plan and warrants representing 8,062,577 shares.

(3)The as-adjusted presentation assumes that net premiums related to the Laurus Loans totaling $573 at September 30, 2005 will result in a gain upon prepayment of these loans. This gain will be offset by fees to Laurus of $500 to facilitate the private placement and prepayment penalties of $324.

MANAGEMENT’S DISCUSSION AND ANALYSIS OF

FINANCIAL CONDITION AND RESULTS OF OPERATIONS

The following discussion of our management, the unaudited consolidated financial statements reflect all adjustments (consistingcondition and results of only normal and recurring accruals) necessary for a fair presentation of such information. The following selected financial dataoperations should be read in conjunctiontogether with our consolidated financial statements, unaudited condensed consolidated financial statements and the related notes thereto and the information under "Management's Discussion and Analysis of Financial Condition and Results of Operations" included elsewhere in this prospectus.
NINE MONTHS ENDED YEAR ENDED DECEMBER 31, SEPTEMBER 30, ---------------------------------------------------- ------------------- 1995(1) 1996(1) 1997 1998 1999 1999 2000 -------- -------- -------- -------- -------- -------- -------- (IN THOUSANDS, EXCEPT PER SHARE DATA) STATEMENT OF OPERATIONS DATA: Net sales.......................... $7,933 $12,535 $11,577 $18,935 $23,035 $16,903 $18,786 Cost of good sold.................. 3,516 6,760 6,336 9,590 12,090 9,040 9,402 ------ ------- ------- ------- ------- ------- ------- Gross profit....................... 4,417 5,775 5,241 9,345 10,945 7,863 9,384 Selling, General and Administrative................... 2,042 4,751 6,412 8,160 11,532 8,531 10,363 Research and Development........... 1,518 1,385 2,047 3,159 6,297 4,140 5,650 Stock Based Compensation Expense... -- -- -- -- -- -- 791 ------ ------- ------- ------- ------- ------- ------- Operating expenses................. 3,560 6,136 8,459 11,319 17,829 12,671 16,804 Income (loss) before income taxes............................ 728 (644) (3,646) (2,506) (8,082) (5,567) (8,289) Net income (loss).................. $ 494 $ (415) $(2,410) $(1,576) $(9,827) $(7,428) $(8,289) ====== ======= ======= ======= ======= ======= ======= Basic and diluted net income (loss) per share........................ $ 0.05 $ (0.04) $ (0.22) $ (0.13) $ (0.76) $ (0.57) $ (0.55) ====== ======= ======= ======= ======= ======= ======= Basic and diluted weighted average shares outstanding............... 10,000 11,000 11,145 12,279 13,000 13,000 15,022 ====== ======= ======= ======= ======= ======= =======
AS OF AS OF DECEMBER 31, SEPTEMBER 30, ---------------------------------------------------- -------------- 1995(1) 1996(1) 1997 1998 1999 2000 -------- -------- -------- -------- -------- -------------- (IN THOUSANDS) BALANCE SHEET DATA: Total assets......................... $5,774 $9,527 $10,010 $14,736 $19,964 $83,461 Long-term debt, less current portion............................ 626 1,597 1,128 695 12,538 -- Total stockholders' equity (deficit).......................... 2,429 2,114 991 6,649 (2,099) 76,593
- ------------------------ (1) Financial information priorProspectus. This discussion contains forward-looking statements based upon current expectations that involve risks, uncertainties and assumptions. Our actual results may differ materially from those anticipated in these forward-looking statements as a result of various factors, including those set forth under “Risk Factors,” “Information Regarding Forward-Looking Statements” and elsewhere in this Prospectus.

The following discussion also gives effect to July 1, 1997 is thatthe restatement of our predecessor corporation, CETAC Holdingstatements of cash flows for the years ended December 31, 2004 and 2003, as discussed in Note P to the consolidated financial statements for the years ended December 31, 2004, 2003 and 2002.

Overview

The Company Inc.develops, manufactures and sells innovative products for the analysis, synthesis and purification of nucleic acids through two operating segments, BioSystems and Nucleic Acids.

The BioSystems operating segment develops, assembles, manufactures and markets versatile products and provides analytical services to the medical research, clinical and pharmaceutical markets for use in genetic variation analysis. Net sales from this operating segment are categorized as bioinstruments, bioconsumables and discovery services.

Bioinstruments. The flagship product of the BioSystems operating segment is the WAVE system which has broad applicability to genetic variation detection in both molecular genetic research and molecular diagnostics. There was a world-wide installed base of 1,269 WAVE systems as of September 30, 2005. Additionally, this operating segment utilizes its subsidiaries or predecessors. 16 MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS THE FOLLOWING DISCUSSION SHOULD BE READ IN CONJUNCTION WITH OUR CONSOLIDATED FINANCIAL STATEMENTS AND NOTES INCLUDED ELSEWHERE IN THIS PROSPECTUS. OVERVIEW We provide innovative toolssales and distribution network to sell a number of independent, third party equipment platforms. Service contracts to maintain installed systems are sold and supported by technical support personnel.

Bioconsumables. The installed WAVE base generates a demand for DNA separationconsumables that are required for the system’s continued operation. These products are developed, manufactured and analysis to researchers seeking to discoversold by this operating segment. In addition, the BioSystems operating segment manufactures and understand variations in the human genetic code and the relationship of these variations to disease. Our WAVE-Registered Trademark- System is a versatile systemsells consumable products that can be used on multiple, independent platforms. These products include SURVEYOR Nuclease and a range of HPLC separation columns.

Discovery Services. The BioSystems operating segment provides various genetic laboratory services through a contract research lab in Gaithersburg, Maryland and a second laboratory in Omaha, Nebraska that operates in a Good Laboratory Practices (“GLP”) compliant environment and is certified under the Clinical Laboratory Improvement Amendment. The services provided primarily include (1) genomic biomarker analysis services to pharmaceutical and biopharmaceutical companies to support preclinical and clinical development of targeted therapeutics; and (2) molecular-based testing for mutation detection, size-based double-strand DNA separationhematology, oncology and analysis, single-strand DNA separationcertain inherited diseases for physicians and analysisthird-party laboratories.

The Nucleic Acids operating segment develops, manufactures and DNA purification. Our business plan ismarkets chemical building blocks for nucleic acid synthesis to focusbiotechnology, pharmaceutical and oligonucleotide synthesis companies and research institutions throughout the world. These products are produced primarily in this operating segment’s only facility, in Glasgow, Scotland. Prior to November 11, 2004, this operating

segment also manufactured synthesized segments of nucleic acids (known as oligonucleotides) in a facility in Boulder, Colorado. On November 11, 2004, the assets associated with this facility were sold to an unaffiliated third party. As a result, the Nucleic Acids operating segment no longer manufactures and sells these specialized oligonucleotides.

Results of Operations

Nine Months Ended September 30, 2005 and 2004

Dollars in thousands


  2005

  2004

  Change

  

%

Change


 

Net Sales

                

Bioinstruments

  $11,343  $10,766  $577  5%

Bioconsumables

   6,977   6,286   691  11%

Discovery Services

   2,159   1,398   761  54%
   


 


 


 

Total BioSystems Business Unit

   20,479   18,450   2,029  11%

Chemical Building Blocks

   3,232   5,588   (2,356) (42)%

Specialty Oligonucleotides and Services

   —     1,796   (1,796) (100)%
   


 


 


 

Total Synthetic Nucleic Acids Business Unit

   3,232   7,384   (4,152) (56)%
   


 


 


 

Total Net Sales

   23,711   25,834   (2,123) (8)%

Cost of Goods Sold

                

Bioinstruments

   5,396   4,401   995  23%

Bioconsumables

   3,334   2,981   353  12%

Discovery Services

   1,744   1,041   703  68%
   


 


 


 

Total BioSystems Business Unit

   10,474   8,423   2,051  24%

Chemical Building Blocks

   3,135   5,452   (2,317) (43)%

Specialty Oligonucleotides and Services

   —     4,609   (4,609) (100)%
   


 


 


 

Total Synthetic Nucleic Acids Business Unit

   3,135   10,061   (6,926) 69%
   


 


 


 

Total Cost of Goods Sold

   13,609   18,484   (4,875) (26)%

Selling, General and Administrative Expenses

   10,023   12,866   (2,843) (22)%

Research and Development Expenses

   1,696   5,344   (3,648) (68)%

Impairment Charges

   247   11,964   (11,717) (98)%

Other Income (Expense)

   (1,888)  (4,704)  (2,816) (60)%

Net Sales. Net sales for the nine months ended September 30, 2005 decreased $2.12 million or 8% from the same period of 2004 as a result of a $4.15 million or 56% decrease in net sales from our Nucleic Acids operating segment offset by a $2.03 million or 11% increase in net sales in our BioSystems operating segment.

The increase in net sales in our BioSystems operating segment resulted from an increase of $0.58 million or 5% from bioinstruments, $0.69 million or 11% from bioconsumables, and $0.76 million or 54% from discovery services. WAVE Systems sold totaled 76 during the nine months ended September 30, 2005 compared to 85 during the same period of 2004. The selling prices of our instruments vary based on the genomicsspecific model and optional accessories. We had an installed base of approximately 1,269 units at September 30, 2005 compared to 1,193 units at December 31, 2004. The increase in the installed base of instruments continues to drive increases in sales of bioconsumables used with these instruments. The increase in discovery services revenue during 2005 was primarily attributable to the discovery services agreements that we entered into with a large pharmaceutical company to support their clinical development of oncology therapeutics. During the nine months ended September 30, 2005, discovery services sales to this customer totaled $2.01 million and represented 10% of net sales within the BioSystems operating segment and 9% of the life sciences industrytotal consolidated net sales. We have no long-term agreement

with customer; therefore, sales will fluctuate and the development, marketing and support ofmay be zero. Future revenues from our proprietary technology for the automated separation and analysis of DNA. RevenuesBioSystems operating segment would be substantially reduced if this customer’s need for our life sciences products are generated fromdeclined.

Nucleic Acids operating segment sales decreased by $4.15 million or 56% during the nine months ended September 30, 2005 compared to the same period of 2004 as a result of fewer chemical building block sales to Geron and the sale of our principal product,specialty oligonucleotides facility in Boulder, Colorado. Net sales to Geron during the WAVE-Registered Trademark- System, and associated consumable products and reagents. Throughnine months ended September 30, 2000, we2005 totaled $1.73 million compared to $3.59 million during the same period of 2004. Net sales to Geron during the nine months ended September 30, 2005 represented 54% of net sales in our Nucleic Acids operating segment and 7% of total consolidated net sales. Net sales to Geron during the nine months ended September 30, 2004, represented 49% of net sales within our Nucleic Acids operating segment and 14% of total consolidated net sales. We have sold over 370 WAVE-Registered Trademark- Systems to major academic research centersno long-term agreement with Geron; therefore, sales will fluctuate and commercial biopharmaceutical companies in 20 countries. Revenuesmay be zero. Future revenue from our Nucleic Acids operating segment would be substantially reduced if Geron’s need for our products declined. As a result of the sale of consumableour facility in Boulder, Colorado, net sales of specialty oligonucleotides decreased by $1.80 million. We no longer manufacture or sell oligonucleotides.

Costs of Goods Sold.Costs of goods sold include material costs for the products that we sell and substantially all other costs associated with our manufacturing facilities (primarily personnel costs, rent and depreciation). It also includes direct costs (primarily personnel costs and supplies) associated with our Discovery Services operations. Depreciation expense included in costs of goods sold totaled $2.23 million and $2.22 million during the nine months ended September 30, 2005 and 2004, respectively.

Costs of goods sold during the nine months ended September 30, 2005 decreased $4.88 million or 26% from the same period of 2004 as a result of a $6.93 million or 69% decrease in our Nucleic Acids operating segment offset by a $2.05 million or 24% increase in our BioSystems operating segment. The overall decrease was primarily attributable to the sale of our oligonucleotide facility and from termination of associated personnel and the elimination of facilities related costs in conjunction with our 2004 Restructuring Plan.

Gross profit was $10.10 million or 43% of total net sales during the nine months ended September 30, 2005 compared to $7.35 million and 28% during the same period of 2004. A summary of gross profit by operating segment follows (dollars in thousands):

   Nine Months Ended September 30,

 
   2005

  2004

 
   

Gross

Profit


  Percent of
Revenue


  Gross
Profit/(Loss)


  Percent of
Revenue


 

BioSystems operating segment

  $10,005  49% $10,027  54%

Nucleic Acids operating segment

   97  3%  (2,677) (36)%
   

     


   
   $10,102  43% $7,350  28%
   

     


   

The decrease in BioSystems operating segment gross profit as a percent of revenue to 49% from 54% for the nine months ended September 30, 2005 and 2004, respectively, is largely attributable to changes in the firstcomposition of products sold. Generally, sales of WAVEs and ancillary instrumentation generate higher gross profits than sales of third party platforms. Sales of specialty consumables (SURVEYOR Nuclease, HPLC separation columns, etc.) generate higher gross profits than base buffers and enzymes. Gross profits from discovery services have been less than expected due to the continuing build out of capacity and expansion of product offerings. Our Nucleic Acids operating segment continues to have excess capacity in its Glasgow, Scotland manufacturing facility that will adversely impact costs of goods sold and gross profit until demand for our Nucleic Acids building block products increase.

Selling, General and Administrative Expenses. Selling, general and administrative expenses primarily include personnel costs, marketing, travel and entertainment costs, professional fees, and facility costs. These costs totaled $10.02 million during the nine months ended September 30, 2005 compared to $12.87 million during the same period of 2000 have represented approximately2004, a decrease of $2.85 million or 22% of our net sales derived from our life sciences business. We expect that over the next five years, sales from consumable products will increase as. As a percentage of our net sales. Before July 1, 1997, we manufacturedrevenue, selling, general and sold instrumentsadministrative expenses totaled 42% and other products used50% during the nine months ended September 30, 2005 and 2004, respectively. This decrease resulted primarily from termination of associated personnel and the elimination of facilities related costs in conjunction with the 2004 Restructuring Plan. Foreign currency transaction adjustments increased operating expenses by approximately $0.24 million during the nine months ended September 30, 2005 compared to the same period of 2004 when foreign currency transaction adjustments reduced operating expenses by approximately $0.14 million. Depreciation expense included in selling, general and administrative expenses totaled $0.50 million and $0.74 million during the nine months ended September 30, 2004 and 2004, respectively.

Research and Development Expenses. Research and development expenses primarily include personnel costs, supplies, and facility costs. These costs totaled $1.70 million during the nine months ended September 30, 2005 compared to $5.34 million during the same period of 2004, a decrease of $3.65 million or 68%. The decrease related primarily to the 2004 Restructuring Plan, which resulted in the non-life sciences instrumentation industry throughelimination of substantially all research and development efforts associated with our predecessor company, CETAC Holding Company, Inc.Nucleic Acids operating segment. Depreciation expense included in research and its subsidiaries. On July 1, 1997,development expenses included $0.42 million and $0.75 million during the nine months ended September 30, 2005 and 2004, respectively.

As a percentage of revenue, research and development expenses totaled 7% and 21% of revenue during the nine months ended September 30, 2005 and 2004, respectively. We expect to continue to invest up to 10% of our revenues in research and development activities primarily associated with our BioSystems operating segment. Research and development costs are expensed in the year in which they are incurred.

Impairment Charges.During the nine months ended September 30, 2005, we merged these companies into Transgenomic, Inc., a new Delaware corporation, fordetermined that certain international patent pursuits were no longer consistent with our strategic plan. Accordingly, we recorded an impairment charge of $0.25 million related to the purposeabandonment of developing, manufacturing and selling our new life sciences product line in addition to continuing to manufacture and market our existing non-life sciences products. In 1999, we decided to focus our resources on our life sciences product line. Accordingly, duringsuch pursuits.

During the second quarter of 20002004, our Board of Directors directed us to explore strategic alternatives for the Nucleic Acids operating segment. The process included significant due diligence by us, our advisors and prospective independent buyers and other interested parties. Based upon information obtained through this process, we solddetermined that it was more likely than not that the value of the assets associated with this business was impaired. We engaged an external valuation firm to assist us in conducting an interim period impairment test that resulted in us recording a non-cash charge of $11.96 million related to our non-life sciences instrument products. Thesethese assets during the nine months ended September 30, 2004. The charge consisted of inventory,$9.87 million related to the impairment of goodwill and $2.10 million related to the impairment of property plant and equipment, patents,equipment.

Other Income (Expense). Other expense during the nine months ended September 30, 2005 of $1.89 million consisted of interest expense of $1.92 million and other intellectual property rightsincome of $0.03 million. Other expense during the nine months ended September 30, 2004 consisted of interest expense of $1.68 million, loss on debt extinguishment of $2.86 million and a lease deposit,other expense of $0.16 million, which consisted primarily of net investment losses associated with sales of Geron stock.

Interest expense consisted of the following (in thousands):

   Nine Months Ended September 30,

   2005

  2004

Interest paid or accrued on outstanding debt

  $477  $388

Amortization of debt premiums

   (816)  —  

Amortization of debt discounts – warrants

   24   —  

Amortization of debt discount – beneficial conversion feature

   725   809

Valuation charge associated with March 2005 conversions

   1,365   —  

Other

   144   487
   


 

   $1,919  $1,684
   


 

The increase in interest paid or accrued on outstanding debt resulted from higher average debt balances and interest rates. Gross debt (before related premiums and discounts) totaled $8.26 million at September 30, 2005 with an aggregate book value, netinterest rate of $125,0008.75% compared to $8.50 million at December 31, 2004 with an interest rate of accrued liabilities,7.25%. During the nine months ended September 30, 2005 and 2004, we had average debt of approximately $4.7$8.03 million as of April 1, 2000. Financial information for periods ending beforeand $7.81 million, respectively. The high and low borrowings under our Credit Line during the effective datenine months ended September 30, 2005 were $6.90 million and $4.75 million, respectively.

On March 18, 2005, the Company agreed to allow Laurus to convert $1.88 million of the sale, April 1, 2000, includesoutstanding principal balance under the resultsCredit Line into 3,600,000 shares of our non-life science instrument product line. On July 21, 2000, we completed our initial public offering, selling 5,152,000its common stock at $0.52 per share. In addition, on March 24, 2005 the Company agreed to allow Laurus to convert $0.65 million of the outstanding principal balance of the Term Note into 1,250,000 shares of common stock at $15.00$0.52 per shareshare. Laurus agreed to apply this Term Note conversion against substantially all remaining 2005 scheduled principal payments on such loan. The closing market price of the Company’s common stock the day before each of these conversions was $0.58 per share. No other provisions of our Credit Line or Term Note were modified, including the $1.00 conversion price for remaining debt. In conjunction with these conversions we accelerated amortization of $0.41 million of related debt premiums and discounts and recorded a charge of $1.37 million related to the fair value of incremental shares received by Laurus.

Loss on debt extinguishment totaled $2.86 million during the nine months ended September 30, 2004. As described in Note E to the accompanying consolidated financial statements, certain August 31, 2004 modifications to our Laurus Loans were treated as extinguishments for financial reporting purposes since the change in present value of expected cash flows between the original and modified agreements was greater than 10%. As such, we recorded a loss on extinguishment of debt of $2.86 million at August 31, 2004 reflecting the difference between (i) the recorded amount of debt, net proceedsof related discounts, of $7.43 million and (ii) the fair value of the new debt instrument of $10.29 million plus the fair value of the new warrants of $0.11 million. The difference between the fair value of the new debt of $10.29 million and the face value of the debt of $8.57 million represents a premium, which will be reflected as a reduction of interest expense over the life of the new debt.

Income Tax Expense.Income tax recorded during the nine months ended September 30, 2005 and 2004 related to income taxes in states, foreign countries and other local jurisdictions, offset by refunds received.

Due to the Company’s cumulative losses, expected losses in future years and inability to utilize any additional losses as carrybacks, the Company did not provided for an income tax benefit during the nine months ended September 30, 2005 or 2004 based on management’s determination that it was more likely than not that such benefits would not be realized. The Company will continue to assess the recoverability of deferred tax assets and the related valuation allowance. To the extent the Company begins to generate taxable income in future periods and it determines that such valuation allowance is no longer required, the tax benefit of the remaining deferred tax assets will be recognized at such time. As of

September 30, 2005, the Company’s deferred tax assets were offset by a valuation allowance of approximately $69.9$41.2 million. Since

Years Ended December 31, 2004, 2003 and 2002

            Dollar Change

  Percent Change

 
   2004

  2003

  2002

  2003 to
2004


  2002 to
2003


  2003 to
2004


  2002 to
2003


 

Net Sales

                           

Bioinstruments

  $14,385  $17,916  $19,098  $(3,531) $(1,182) (20)% (6)%

Bioconsumables

   8,838   7,260   5,137   1,578   2,123  22% 41%

Discovery Services

   2,020   868   —     1,152   868  133% —   
   


 


 

  


 


 

 

Total BioSystems operating segment

   25,243   26,044   24,235   (801)  1,809  (3)% 7%

Chemical Building Blocks

   6,488   6,631   13,319   (143)  (6,688) (2)% (50)%

Specialty Oligonucleotides

   2,058   1,191   —     867   1,191  73% —   
   


 


 

  


 


 

 

Total Nucleic Acids operating segment

   8,546   7,822   13,319   724   (5,497) 9% (41)%
   


 


 

  


 


 

 

Total Net Sales

   33,789   33,866   37,554   (77)  (3,688) (1)% (10)%

Cost of Goods Sold

                           

Bioinstruments

   6,382   7,343   7,650   (961)  (307) (13)% (4)%

Bioconsumables

   4,012   3,475   2,284   537   1,191  15% 52%

Discovery Services

   1,603   557   —     1,046   557  188% —   
   


 


 

  


 


 

 

Total BioSystems operating segment

   11,997   11,375   9,934   622   1,441  5% 15%

Chemical Building Blocks

   7,165   6,937   9,635   228   (2,698) 3% (28)%

Specialty Oligonucleotides

   5,434   6,003   —     (569)  6,003  (9)% —   
   


 


 

  


 


 

 

Total Nucleic Acids operating segment

   12,599   12,940   9,635   (341)  3,305  (3)% 34%
   


 


 

  


 


 

 

Total Cost of Goods Sold

   24,596   24,315   19,569   281   4,746  (1)% 24%

Selling, General and Administrative Expenses

   17,499   17,324   24,199   175   (6,875) 1% (28)%

Research and Development Expenses

   6,685   9,305   12,201   (2,620)  (2,896) (28)% (24)%

Restructuring Charges

   3,570   738   3,282   2,832   (2,544) 384% (78)%

Impairment Charges

   11,965   4,772   —     5,726   4,772  120% —   

Gain on sale of facility

   1,466   —     —     1,466   —    —    —   

Other Income (Expense)

   (5,406)  (305)  437   5,102   742  1673% 170%

Net Sales. Net sales during 2004 decreased $0.08 million or 1% from 2003 as a result of a $0.80 million or 3% decrease in sales in our decisionBioSystems operating segment offset by a $0.72 million or 9% increase in sales in our Nucleic Acids operating segment.

The decrease in sales in our BioSystems operating segment resulted from a decrease of $3.58 million or 20% from bioinstruments that was partially offset by increases in sales of bioconsumables of $1.58 million or 22% and Discovery Services of $1.15 million or 133%. The decrease of bioinstrument sales was primarily the result of a decline in the number of WAVE Systems sold from 122 in 2003 to 107 in 2004. The selling prices of our instruments vary based on the specific model and optional accessories. We had an installed base of approximately 1,200 units at December 31, 2004. The increase in the installed base of instruments continues to drive increases in sales of bioconsumables used with these instruments. The increase in Discovery Services revenue during 2004 was primarily attributable to the discovery services agreements that we entered into with pharmaceutical companies to support their clinical development of oncology therapeutics. We plan to continue to seek opportunities to provide genetic variation discovery and analysis services to pharmaceutical and other customers and believe that these services provide us a significant opportunity to expand revenues in the future.

Nucleic Acids operating segment sales increased by $0.72 million or 9% in 2004 compared to 2003 as a result of a substantial increase in sales of specialty oligonucleotides produced by our facility in

Boulder, Colorado as raw materials in DNA-based drug candidates. As a result of the sale of this facility in November 2004, we will no longer manufacture or sell oligonucleotides. Sales of our chemical building block products produced in our Glasgow, Scotland facility were essentially the same in 2004 as in 2003. During 2004, sales of chemical building blocks to Geron Corporation totaled $4.15 million and represented 12% of total consolidated net sales, 49% of total net sales within our Nucleic Acids operating segment and 61% of chemical building blocks revenue. We do not have long-term sales commitments from Geron Corporation and, accordingly, the amount we sell them is subject to change. Revenues from our Nucleic Acids operating segment would be substantially reduced if Geron’s need for our products declined or if it decided to obtain these products from other suppliers.

Costs of Goods Sold.Costs of goods sold include material costs for the products that we sell and substantially all other costs associated with our manufacturing facilities (primarily personnel costs, rent and depreciation). It also includes direct costs (primarily personnel costs and supplies) associated with our Discovery Services product line. Depreciation expense included in costs of goods sold totaled $2.10 million and $1.74 million in 2004 and 2003, respectively.

Costs of goods sold during 2004 decreased $0.28 million or 1% from 2003 as a result of a $0.62 million or 5% increase in our BioSystems operating segment offset by a $0.34 million or 3% decrease in our Nucleic Acids operating segment. The overall decrease is consistent with the decrease in net sales.

Gross profit was $9.19 million or 27% of total net sales during 2004 compared to $9.55 million and 28% during 2003. A summary of margins by operating segment follows (dollars in thousands):

   2004

  2003

 
   Dollars

  Percent

  Dollar

  Percent

 

BioSystems operating segment

  $13,246  52% $14,669  56%

Nucleic Acids operating segment

   (4,053) (47)%  (5,118) (65)%
   


    


   
   $9,193  27% $9,551  28%
   


    


   

We expect gross profits from our BioSystems operating segment to be within historic ranges of 50% to 60%. As a result of the sale of our Boulder, Colorado facility and the restructuring plan implemented in November 2004, we anticipate that our cost of goods sold will be significantly improved. However, our Nucleic Acids operating segment continues to have excess capacity in its Glasgow, Scotland manufacturing facility that will adversely impact costs of goods sold and margins until demand for our Nucleic Acids building block products increase.

Selling, General and Administrative Expenses. Selling, general and administrative expenses primarily include personnel costs, marketing, travel and entertainment costs, professional fees, and facility costs. These costs totaled $17.50 million in 2004 compared to $17.32 million in 2003, an increase of $0.18 million or 1%. This increase related to a $1.26 million increase in selling expenses offset by a $1.09 million reduction in general and administrative expenses. As a percentage of revenue, selling, general and administrative expenses totaled just over 51% in both 2004 and 2003. Depreciation expense include in selling, general and administrative expenses totaled $1.02 million and $1.28 million in 2004 and 2003, respectively.

Research and Development Expenses. Research and development expenses primarily include personnel costs, supplies, and facility costs. These costs totaled $6.69 million in 2004 compared to $9.31 million in 2003, a decrease of $2.62 million or 28%. As a percentage of revenue, research and development expenses totaled 20% and 27% of revenue in 2004 and 2003, respectively. These decreases related to our focus on expense control, the sale of our life sciences products, we have incurred significant losses,Boulder, Colorado facility and as of September 30, 2000, we had an accumulated deficit of $20.6 million. Our losses have resulted principally from costs incurredthe restructuring plan implemented in November 2004. Depreciation expense included in research and development

expenses included $0.88 million and selling, general$0.89 million in 2004 and administrative costs associated with our operations.2003, respectively. We expect to continue to incur substantialinvest up to 10% of our revenues in research and development activities primarily associated with our BioSystems operating segment. Research and selling, generaldevelopment costs are expensed in the year in which they are incurred.

Restructuring Charges. On November 13, 2004, our Board of Directors approved a restructuring plan designed to refocus on the BioSystems operating segment and administrative costs as we continue to expand our operations. RESULTS OF OPERATIONS NINE MONTHS ENDED SEPTEMBER 30, 2000 AND 1999 NET SALES. Net sales increased 11%, from $16.9 million in 1999 to $18.8 million in 2000. Sales of our life sciences products increased 68%, from $9.9 million in 1999 to $16.6 million in 2000. Total revenues from sales of WAVE-Registered Trademark- Systems increased 67%, from $7.8 million in 1999 to $13.0 million in 2000. Life sciences consumable sales increased 70%, from $2.1 million in 1999 to $3.6 million in 2000. Sales of consumable products increased asbetter align the installed base of WAVE-Registered Trademark- Systems has increased and as researchers begin to use them more extensively in place of other methods of DNA analysis. Sales of 17 our non-life science instrument products decreased 69%, from $7.0 million in 1999 to $2.2 in 2000 dueCompany’s cost structure with anticipated revenues. The plan (which is incremental to the fact thatsale of the specialty oligonucleotide manufacturing facility in Boulder, Colorado) included a workforce reduction of approximately 60 positions and the closure of two domestic research and development facilities associated with our Nucleic Acids operating segment and two European field offices. Additionally, we sold this product line effective April 1, 2000, therefore, no saleseliminated approximately 10 positions at its chemical building blocks manufacturing facility in Glasgow, Scotland. In conjunction with these changes, we incurred a charge of these products were recorded after March$3.57 million during the quarter ending December 31, 2000. COST OF GOODS SOLD. Cost2004 consisting of goods sold increased 4% from $9.0severance benefits of $1.41 million, in 1999future rents on closed facilities (net of projected sublease rents) of $1.24 million, the write-off of property and equipment specifically attributable to $9.4closed facilities of $0.74 million in 2000, representing 54%and other costs of net sales in 1999 and 50% of net sales in 2000. Cost of goods sold as a percent of sales has improved year over year due to lower material costs for our life science instruments as compared to the non-life science instruments.$0.18 million. We anticipate that this percentage will improve in the future as consumables become a greater percentage of our revenues. SELLING, GENERAL AND ADMINISTRATIVE EXPENSES. Selling, general and administrative expenses increased 22%, from $8.5 million in 1999 to $10.4 million in 2000. This increase is the result of additional personnel and personnel-related expenses and depreciation. Average selling, general and administrative personnel counts increased 20% for the nine months from 83 in 1999 to 99 in 2000. Direct personnel expenses and increased travel and travel relatedhad accrued expenses associated with this restructuring plan of $1.91 million at December 31, 2004 of which $1.49 million is expect to be paid in 2005.

Impairment Charges.During the activitiessecond quarter of 2004, our expanded staff accountedBoard of Directors directed us to explore strategic alternatives for approximately 75%the Nucleic Acids operating segment. The process included significant due diligence by us, our advisors and prospective independent buyers and other interested parties. Based upon information obtained through this process, we determined that it was more likely than not that the value of the total increase. Increased depreciation expenseassets associated with investmentsthis business were impaired. We engaged an external valuation firm to assist us in offices and equipment supporting our expanded staff accounted for approximately 10%conducting an interim period impairment test that resulted in us recording a non-cash charge of the total increase. We anticipate selling, general and administrative expenses$11.97 million related to increase over the next several years to support our growing marketing, sales and business activities and costs associated with operating a public company. RESEARCH AND DEVELOPMENT EXPENSES. Research and development expenses increased 37%, from $4.1 million in 1999 to $5.7 million in 2000. These expenses represented 24% of net sales in 1999 versus 30% of net sales in 2000. The increase in these expenses is attributable to increased personnel and personnel related expenses, the costs associated with the expanded activities of the staff and depreciation. Average research and development personnel count increased 16% in the nine months from 49 in 1999 to 57 in 2000. Salaries, payroll taxes and benefits accounted for approximately 60% of the total increase. The increase in depreciation is the result of investments in equipmentassets during the first ninethree months ended June 30, 2004. The charge consisted of 2000. The increase in depreciation accounted for approximately 25%$9.87 million related to the impairment of goodwill and $2.10 million related to the total increase. We expect researchimpairment of property and development spending to increase overequipment.

Gain on Sale of Facility. On November 11, 2004, we sold the next several years as we expand our development efforts. STOCK BASED COMPENSATION. Stock based compensation expense was $791,000 in 2000. In connection with the sale of our non-life science instrument product line, the Company accelerated the vesting of 71,700 options, which would have otherwise been forfeited. Former employees who wereassets associated with our non-life science product line held these options.specialty oligonucleotides manufacturing facility in Boulder, Colorado to a subsidiary of Eyetech Pharmaceuticals, Inc. (“Eyetech”). The acceleration resultedsale price was $3.00 million in cash plus the assumption of the lease on the Boulder facility and of certain equipment leases with a gross value of $2.38 million. Net proceeds from the sale (after transaction expenses and fees paid to our investment advisors) equaled approximately $2.70 million. In conjunction with this transaction, we recorded a gain on sale of $1.47 million in the recording of $574,000 of stock based compensation expense in the firstfourth quarter of 2000. The remaining2004.

Other Income (Expense). Other expense is due to amortizationduring 2004 of deferred compensation related to stock options issued. OTHER EXPENSES. Other expenses,$5.41 million consisted of interest expense of $2.38 million, loss on debt extinguishment of $2.86 million, and other net expense of $0.16 million which consist mainlyconsisted primarily of net investment losses associated with available-for-sales securities (Geron stock). Other expense during 2003 of $0.31 million consisted of interest income of $0.20 million, interest expense of $0.31 million and expense, increased from $760,000 in 1999 to $870,000 in 2000. Interest expense for the nine months was $1.8 million as compared to $885,000 in 1999. other net expenses of $0.20 million.

The increase in interest expense wasresulted from higher average debt balances and interest rates. Gross debt totaled $8.95 million at December 31, 2004 compared to $4.69 million at December 31, 2003. Our Credit Line and Term Note had average balances during 2004 of $5.69 million and $2.73 million, respectively, with weighted average interest rates of 6.39% and 6.48%, respectively. The high and low borrowings under our Credit Line during 2004 were $7.23 million and $2.63 million, respectively. Interest expense in 2004 and 2003 includes amortization of related premiums and discounts of $1.64 million and $0, respectively.

Loss on debt extinguishment totaled $2.86 million during 2004. As described in Note E to the resultaccompanying consolidated financial statements, certain August 31, 2004 modifications to our Laurus Loans were treated as extinguishments for financial reporting purposes since the change in present value of expected cash flows between the original and modified agreements is greater than 10%. As such, we recorded a loss on extinguishment of debt of $2.86 million at August 31, 2004 reflecting the difference between (i) the recorded amount of debt, net of related discounts, of $7.43 million and (ii) the fair value of the new debt instrument of $10.29 million plus the fair value of the new warrants of $0.11 million. The difference between the fair value of the new debt of $10.29 million and the face value of the debt of $8.57 million represents a premium, which will be reflected as a reduction of interest expense on our $12 million convertible notes that were issued in March 1999, additional interest expense on our working capital lending facility and accelerated interest charges on our convertible notes. Onover the effective date of our initial public offering interest payable on the notes was accelerated through the maturity datelife of the notes at an annual interest rate of 3.6%. As a result, the Company recorded additional interestnew debt.

Income Tax Expense. Income tax expense of approximately $795,000relates solely to our operations in the third quarter of 2000. Interest income for the nine months was $920,000 as comparedcertain foreign countries and certain states. In addition to $107,000 in 1999. The increase in interest income is a result of the investment of the net proceeds from our initial public offering. INCOME TAXES. The income tax expense in 1999 was $1.9 million while in 2000 nothese jurisdictions, we do not record any income tax benefit was provided. The expense recorded in 1999 relates to the establishment of a valuation allowance against previously recorded deferred tax assets. No further tax benefit is being recordedbenefits due 18 to our cumulative losses in recent years, expected losses in future years and the uncertainty as to whether we will be able to utilize any additional losses as carrybacks. We will continue to assess the recoverability of deferred tax assets and the related valuation allowance. We expect to continue to incur losses and expect to continue to provide valuation allowances against deferred tax assets. To the extent we begin to generate income in future years and it is determined that such valuation allowance is no longer required, the tax benefit of the remaining deferred tax assets will be recognized. YEARS ENDED DECEMBEROur deferred tax assets as of December 31, 1999 AND 1998 NET SALES.2004 were $38.29 million and were entirely offset by a valuation allowance. As of December 31, 2004, we had federal net operating loss carryforwards of approximately $91.47 million. Our net operating loss carryforwards will expire at various dates from 2008 through 2024, if not utilized. We also had state income tax loss carryforwards of $37.62 million at December 31, 2004. These carryforwards will also expire at various dates beginning in 2005 if not utilized.

Years Ended December 31, 2003 and 2002

NetSales. Net sales decreased in 2003, as compared to 2002, due to a significant decline in demand for our Nucleic Acids products. Sales in our Nucleic Acids operating segment decreased due to a significant decline in demand for our chemical building block products. These products are used by our biopharmaceutical and pharmaceutical customers as raw materials in DNA based drug candidates. The decrease in demand is largely attributable to the timing of completion and/or failure of Phase III clinical trials by certain of our large customers. This decrease in demand for DNA building blocks in 2003 was partially offset by sales of oligonucleotides generated by our start-up manufacturing facility in Boulder, Colorado.

Sales in our BioSystems operating segment increased 22%, from $18.9 million for the year ended 1998 to $23.0 million for the year ended 1999. Sales from our life sciences products increased 91%, from $7.4 million in 1998 to $14.2 in 1999. Total revenues2003. Revenues from sales of WAVE systems and related services were relatively flat with 2002. However, bioconsumable product sales strength resulted from increased WAVE related consumable usage as the installed base of WAVE Systems has increased 107%, from $5.4 millionand as researchers begin to use them more extensively in 1998place of other methods of DNA analysis. Also contributing to $11.2 millionthe increase were revenues generated by new product sales including our Optimase product line that was launched in 1999. WAVE System unit sales increased 85% from 72 in 1998 to 133 in 1999. Life science consumables sales increased 50%, from $2.0 million in 1998 to $3.0 million in 1999. In 1999, we acquired another manufacturer of life science consumables2002 and began including salesto see increased usage in 2003. Sales of these products in our revenues. These sales, along withWAVE systems declined slightly from 2002 to 2003 offset by an increase in related services revenues. The slight decline in systems sales was mainly due to continued low sales volumes to our North American customer base. Increased services revenue was attributable to our focus on providing genetic variation discovery and analysis services to our pharmaceutical base of $662,000 in salescustomers.

Cost of our WAVE Systems consumables, account for the increase in total life science consumables sales. Sales of our non-life sciences instruments decreased 24%, from $11.5 million in 1998 to $8.8 million in 1999. This decrease was a result of reduced demand for these products related to an industry-wide consolidation among customers for these products and the negative effect of a reorganization of our dealer and distributor network. COST OF GOODS SOLD.GoodsSold. Cost of goods sold increased from $9.6 million in 19982003 over 2002 despite the decline in our revenues. This increase was anticipated and was attributable mainly to $12.1 millionexcess manufacturing capacity in 1999 due to increased sales. Costour Nucleic Acids operating segment. The BioSystems operating segment cost of goods sold as a

percentage of sales declined year over year but remained relatively constant from 1998within historical ranges at approximately 43%. The margins in our Nucleic Acids operating segment were negatively impacted by higher manufacturing costs and excess capacity due largely to 1999, increasing from 51%our plant expansion efforts in 1998 to 52% in 1999. GENERAL AND ADMINISTRATIVE EXPENSES.Glasgow, Scotland and Boulder, Colorado.

Selling, General and administrative expenses increased 35%, from $2.8 million in 1998 to $3.8 million in 1999. This increase is the result of increased wages and salaries, personnel-related expenses and increased consulting fees. General and administrative personnel increased from 22 in 1998 to 30 in 1999, or 36%. Compensation, benefits, hiring expenses and other direct personnel costs accounted for 28% of the total increase. Additionally, we paid a one-time advisory services fee of $550,000, or 55% of the total increase, in 1999 in connection with consulting and financial advisory services associated with the development of our strategic business plan and related intermediate and long-term financial strategies. We anticipateAdministrative Expenses. Selling, general and administrative expenses decreased significantly from 2002 to continue to increase over the next several years to support2003 as a result of our growing businessrestructuring activities and costs associated with operating a public company. MARKETING AND SALES EXPENSES. Marketing and sales expenses increased 45%, from $5.4 million in 1998 to $7.8 million in 1999. This increase is the result of continuing to build our direct sales and marketing staff in the United States for our entry into the life sciences market. We also opened an office in Japan and expanded our life sciences sales efforts in Europe. Sales and marketing personnel increased 43%, from 47 in 1998 to 67 in 1999. Of this increase in personnel, 8 were in the United States, 9 in Europe and 3 in Japan. Compensation, benefits, hiring expenses and other direct personnel costs accounted for 42%focus on expense control. Nearly half of the total increase. The remaining increase is attributable to higher indirectdecrease was in personnel expenses associated with marketing and sales activities. We expect thesepersonnel related expenses to continue to increase over the next several years as we expandsignificantly reduced our marketingemployee headcount. Additionally, reductions in outside services, advertising, sales promotions, depreciation and sales efforts. RESEARCH AND DEVELOPMENT EXPENSES.travel expenses accounted for approximately 30% of the total decrease.

Research and Development Expenses. Research and development expenses increased 99%, from $3.2decreased significantly as a result of our restructuring activities and focus on expense control. Over 60% of the total decrease was in personnel and personnel related expenses as we significantly reduced our employee headcount. Additionally, significant reductions in outside services, supplies, depreciation and travel expenses were realized. During 2003 there were no capitalized software costs, whereas in the prior year we capitalized approximately $1.13 million in 1998 to $6.3 million in 1999. These expenses represented 17% of net sales in 1998, versus 27% of net sales in 1999.development costs. Research and development expenses consist of salaries and related personnel costs of researchers and software developers, material costs for prototypes and test units, legal expenses relating to intellectual property research and application development activities, testing and enhancement of our products, and amortization of intellectual property. We expense our research and development costs in the year in which they are incurred.incurred with the exception of certain capitalized software development costs.

Restructuring Charges. During the fourth quarter of 2002 management formulated and executed a significant portion of a restructuring plan. The increaseplan was developed to reduce expenses thereby better aligning the Company’s expense structure with current business prospects. The plan included employee terminations, office closures, termination of collaborations and write-offs of abandoned intellectual property. We continued to execute the plan during the first half of 2003 resulting in these expensesthe additional charges recorded in 2003. These charges consisted of mainly employee severance costs and the write-off of a note receivable related to the abandonment of a product development collaboration. The note receivable write-off was attributable to an 84% increase 19 in researcha non-cash charge of $0.35 million.

Goodwill Impairment Charge. Statement of Financial Accounting Standard (SFAS) No. 142,Goodwill and development personnel, from 31 in 1998 to 57 in 1999. Compensation, benefits, hiring expensesOther Intangible Assets, establishes guidelines for accounting for goodwill and other direct personnel costs accountedintangible assets and provides that goodwill and other intangible assets with indefinite lives will not be amortized, but will be evaluated for 62% of the total increase.impairment annually. The remaining increase is attributableCompany engaged an external valuation firm to the costs associatedassist with the expanded activitiescompletion of its annual impairment test during the research and development staff. We expect research and development spending to increase significantly over the next several years asfourth quarter of 2003. As a result of this test we expand our research and product development efforts. OTHER EXPENSES. Other expenses, which consisted mainlyrecorded a non-cash goodwill impairment charge of net interest expense, increased 125%, from $532,000 in 1998 to $1.2$4.77 million in 1999. This increase was related to interest expense on our placement of $12.0 million of convertible notes in March 1999. INCOME TAXES.nucleic acids segment.

Income Taxes. The income tax benefit in 1998 was $930,000, while in 1999 incomeCompany’s tax expense was $1.7 million. A valuation reserve of $4.5 million wasrelates to its operations in certain foreign countries and certain states. No tax benefits are being recorded in 1999 due to our cumulative losses in recent years, expected losses in future years and an inabilitythe uncertainty as to whether we will be able to utilize any additional losses as carrybacks. We will continue to assess the recoverability of deferred tax assets and the related valuation allowance. We expect to continue to incur losses and expect to continue to provide a valuation reserveallowances against deferred tax assets. To the extent we begin to generate income in future years and determineit is determined that such valuation allowance is no longer required, the tax benefit of the remaining deferred tax assets will be recognized. Our deferred tax assets as of December 31, 2003 were $30.60 million and were entirely offset by a valuation allowance. As of December 31, 1999,2003, we had federal net operating

loss carryforwards of approximately $11.6$78.50 million. We also had federal research and development tax credit carryforwards of approximately $131,000. The net operating loss and credit carryforwards will expire at various dates from 2012 through 2019, if not utilized. We also had state income tax loss carryforwards of $3.0 million. These carryforwards will also expire at various dates if not utilized. As of December 31, 1998 and 1999, we had net deferred tax assets of approximately $2.0$28.70 million and $4.7 million, respectively. The net deferred tax asset at December 31, 1999 has been offset by a valuation allowance of $4.5 million due to our cumulative losses in recent years, expected losses in future years2003.

Liquidity and an inability to utilize any additional losses as carrybacks. The net deferred tax assets were $2.0 millionCapital Resources

Our working capital positions at September 30, 2005 and $180,000 as of December 31, 1998 and 1999, respectively. Deferred tax assets relate primarily to net operating loss carryforwards. YEARS ENDED DECEMBER 31, 1998 AND 1997 NET SALES. Net sales increased 64%, from $11.6 million in 1997 to $18.9 million in 1998. Of the $7.3 million increase, $5.1 million was due to increased sales of our WAVE System and related consumable products. WAVE System unit sales increased from five in 1997 to 72 in 1998. Sales of life sciences consumable products2004 were $1.9 million in 1997 and $2.0 million in 1998. Sales of non-life sciences instrument products increased 22%, from $9.4 million in 1997 to $11.5 million in 1998. This increase was due to the release of an upgraded laser-based solid sampling product in the first quarter of 1998. COST OF GOODS SOLD. Cost of goods sold increased from $6.3 million in 1997 to $9.6 million in 1998, but decreased from 55% of net sales in 1997 to 51% of net sales in 1998. This decrease was due to the fact that sales of WAVE Systems accounted for a greater percentage of our total sales in 1998 than they did in 1997. as follows (in thousands):

   

September 30,

2005


  

December 31,

2004


  Change

 

Current assets(1)

  $16,399  $17,908  $(1,509)

Current liabilities

   14,986   18,724   (3,738)
   

  


 


Working Capital

  $1,413  $(816) $2,229 
   

  


 


(1)Current assets include cash and cash equivalents of $1,361 and $1,002 at September 30, 2005 and December 31, 2004, respectively.

The amount of in-house manufacturing costs incurred by us to produce WAVE Systems is less than the in-house manufacturing costs we incur to produce our non-life sciences instruments. The lower in-house manufacturing costs for the WAVE System are partially offset by the higher material costs associated with the WAVE System. The decrease was also due to the allocation of fixed manufacturing costs over a larger revenue base. GENERAL AND ADMINISTRATIVE EXPENSES. General and administrative expenses increased 14%, from $2.4 million in 1997 to $2.8 million in 1998. This increase is the result of increased bad debt expenses. In total, other general and administrative expenses remained consistent with the prior year. The increase in bad debt expenses was related to the write-off of one uncollectible account receivable in Europe. 20 MARKETING AND SALES EXPENSES. Marketing and sales expenses increased 35%, from $4.0 million in 1997 to $5.4 million in 1998. This increase is the result of building a direct sales and marketing staff in the United States for our entry into the life sciences market. Sales and marketing personnel increased 24% from 38 in 1997 to 47 in 1998. Compensation, benefits, hiring expenses and other direct personnel costs accounted for 54% of the total increase. The remaining increase is attributable to higher indirect personnel expenses associated with marketing and sales activities. RESEARCH AND DEVELOPMENT EXPENSES. Research and development expenses increased 54%, from $2.0 million in 1997 to $3.2 million in 1998. The increase in these expenses was attributable to an increaseimprovement in our research and development staff and increased research and development activities. Compensation, benefits, hiring expenses and other direct personnel costs accounted for 50% of the total increase. The remaining increase is related to the increased activities of both internal staff and out-sourced staff. OTHER EXPENSES. Other expenses, which consisted mainly of net interest expense, increased 24%, from $427,000 in 1997 to $532,000 in 1998. This increase was due to the payment of interest on $1.5 million of mezzanine short-term financing obtained at the end of 1997. This short-term financing was repaid in 1998. INCOME TAXES. The income tax benefit for 1997 was $1.2 million, while the benefit for 1998 was $930,000. The effective tax rate for 1997 was 34%, and the effective tax rate for 1998 was 37%. As of December 31, 1998, we had federal net operating loss carryforwards of approximately $3.9 million. We also had federal research and development tax credit carryforwards of approximately $76,000. The net operating loss and credit carryforwards will expire at various dates from 2012 through 2018, if not utilized. We also had state income tax loss carryforwards of $1.4 million. These carryforwards will also expire at various dates if not utilized. At December 31, 1998, the Company's management had determined that it was more likely than not that the deferred tax asset of $1.95 million would be realized through expected profits in future years. LIQUIDITY AND CAPITAL RESOURCES We have experienced net losses and negative cash flows from operations during the past three years. As a result, we had an accumulated deficit of $20.6 million as of September 30, 2000. On July 21, 2000, we issued 5,152,000 shares of common stock in our initial public offering at $15.00 per share. After payment of the underwriters' discounts and commissions and other expenses, we received net proceeds of approximately $69.9 million from this offering. In addition, the holder of a warrant to purchase 300,000 shares of common stock exercised the warrant at the time of our initial public offering thus providing us with an additional $1.5 million in cash. As of December 31, 1999 and September 30, 2000, we had approximately $153,000 and $60.4 million, respectively, in cash and cash equivalents. On May 19, 2000 we sold the assets related to our non-life sciences instrument product line to a company controlled by Stephen F. Dwyer, a director and a principal stockholder of ours, for a total adjusted purchase price of $5.65 million plus reimbursement by the buyer of approximately $400,000 of expenses paid by us since March 31, 2000 in connection with this product line. Approximately $3.65 million was paid in cash at the closing of the sale and $2.0 million was paid with an interest-bearing promissory note due on December 30, 2000. The purchaser financed the cash portion of the purchase price for these assets plus initial working capital needs with borrowings of approximately $4.6 million obtained from a bank. We acquired the notes evidencing these loans from the bank upon closing of our initial public offering by paying to the bank an amount equal to the entire principal balance of the notes plus accrued and unpaid interest. These acquired notes were consolidated with the original $2.0 million note. All of the principal of and accrued interest on this consolidated note was repaid prior to maturity. On December 29, 2000, we repurchased 261,904 shares of our common stock from Mr. Dwyer for $10.50 per share, which was the 21 closing price for our common stock on that day, for an aggregate purchase price of $2,749,992. Mr. Dwyer used the proceeds from this sale to partially prepay the principal of and interest on the consolidated note. The Company's $12 million convertible notes, due 2002, contained features that were impacted by our initial public offering. On the effective date of our initial public offering interest payable on the notes was accelerated through the maturity date of the notes at an annual interest rate of 3.6%. As a result, the Company recorded additional interest expense of approximately $795,000. These notes contained a conversion feature that would allow the Company, upon satisfaction of certain conditions, to cause conversion of the principal plus accrued interest into common stock of the Company at a conversion price of $5.00 per share. On August 14, 2000, the Company's Board of Directors authorized the Company to convert the notes into common stock upon meeting the required conditions. On August 15, 2000, such conditions were met and the notes were converted into 2,750,906 shares of common stock. All principal and accrued interest at the conversion date of approximately $13.9 million was recorded to stockholders equity. Our operating activities resulted in net outflows of $7.0 million inposition during the first nine months of 19992005 was due primarily to conversions of $2.58 million of borrowings under our Laurus Loans into shares of our common stock. We had $0.91 million available under our Credit Line at September 30, 2005. On October 31, 2005, we received proceeds from the 2005 Private Placement of $13.90 million after transaction costs of $1.18 million. These proceeds were partially used to repay all outstanding principal and accrued interest on our Laurus Loans including fees to facilitate the 2005 Private Placement and prepayment penalties to Laurus in the sum of $0.82 million. As a result, our Laurus Loans have been cancelled and are no longer available to us. The remaining proceeds of $5.35 million will be used for future working capital needs.

The following shows the effects of the 2005 Private Placement and simultaneous repayment of the Laurus Loans on our September 30, 2005 consolidated balance sheet data as comparedif these transactions had occurred on September 30, 2005 (in thousands).

   September 30, 2005

   Actual

  As Adjusted

Cash and cash equivalents

  $1,361  $6,669
   

  

Credit Line

  $6,935  $—  
   

  

Current portion of Term Note

  $675  $—  
   

  

Term Note, less current portion

  $1,226  $—  
   

  

Total stockholder’s equity(1)

  $15,577  $29,220
   

  

(1)At November 29, 2005, we have 49,172,079 shares outstanding and 13,603,592 potentially dilutive securities consisting of 5,541,015 options issued under our stock option plan and warrants representing 8,062,577 shares.

While we believe that existing sources of liquidity are sufficient to $3.7 million in 2000. The operatingmeet expected cash needs through 2006, we have experienced recurring net losses and have historically relied upon cash flows from investing and financing activities to offset significant cash outflows from operating activities. To the extent necessary, we believe that we can manage costs and expenses at reduced levels to conserve working capital. The need for this period resulted from significant investmentsany such cost and expense reductions would likely delay implementation of our business plan. Ultimately, we must achieve sufficient revenues in researchorder to generate positive net earnings and development, and sales and marketing, which resulted in operating losses. The operating cash outflows for the nine months are significantly lower than those in the prior year. This improvement in operating cash flows was attainedfrom operations.

Analysis of Cash Flows

Nine Months Ended September 30, 2005 and 2004

Net Change in part throughCash and Cash Equivalents.Cash and cash equivalents increased accounts receivable collection. Net cash used in investing activities was $2.8$0.36 million forduring the nine months ended September 30, 1999, compared to $3.5 million in 2000. The change in investing cash flow in 2000 is the2005 as a result of our acquisition of the notes evidencing loans previously obtained by the purchaser of our non-life sciences product linenet cash from investing activities and investments in property and equipment. Net cash provided by financing activities was $11.9of $0.24 million forand $2.31 million, respectively, offset by net cash used in operating activities of $1.98 million, and changes in foreign currency exchange rates of $0.21 million.

Cash Flows from Operating Activities. Cash flows used in operating activities totaled $1.98 million during the nine months ended September 30, 1999,2005 compared to $67.3$8.71 million during the same period of 2004. The use in 2005 related primarily to a net loss of $3.78 million offset by non-cash charges of $4.83 million. Non-cash charges consisted primarily of depreciation and amortization and certain financing costs. Working capital and other adjustments decreased cash flows from operating activities by $3.03 million. We spent $1.54 million during the nine months ended September 30, 2005 related to the 2004 Restructuring Plan. We had accrued expenses associated with this plan of $0.37 million at September 30, 2005. This balance relates primarily to future rents on closed facilities (net of projected sublease rents) of which $0.03 million is expected to be paid during the remainder of 2005 and $0.34 million in 2000.2006 and thereafter.

Cash Flows from Investing Activities. Cash flows provided by investing activities totaled $0.24 million during the nine months ended September 30, 2005 compared to cash flows used in investing activities of $1.54 million during the same period of 2004. The financingprincipal source of cash inflowsflows from investing activities in 2000 are2005 were sales of available for sale securities (Geron stock) of $0.62 million that were offset by purchases of $0.55 million of property and equipment primarily associated with the resultbuild out of our initial public offeringGlasgow, Scotland manufacturing facility that is substantially complete.

Cash Flows from Financing Activities. Cash flows from financing activities totaled $2.31 million during the nine months ended September 30, 2005 compared to $7.19 million during 2004. The principal source of cash flows from financing activities in 2005 was net draws on our Credit Line that were offset by the repayment of bank debt. The funds usedpayments on our Term Note. There are no scheduled principal payments for the repayment cameremainder of 2005 on our Term Note.

Years Ended December 31, 2004 and 2003

Net Change in Cash and Cash Equivalents.Cash and cash equivalents decreased $0.24 million during the year ended December 31, 2004 as net cash used in operating activities of $12.75 million offset by net cash from investing activities and financing activities of $6.03 million and $6.00 million, respectively and changes in foreign currency exchange rates of $0.48 million.

Cash Flows Used in Operating Activities. Cash flows used in operating activities totaled $12.75 million during 2004 compared to $13.02 million during 2003. The use in 2004 related primarily to a net loss of $34.37 million offset by non-cash charges of $21.80 million. Non-cash charges consisted of

depreciation and amortization, certain restructuring charges, impairment charges, certain financing costs and loss on debt extinguishment. Working capital and other adjustments decreased cash flows from operating activities by $0.18 million.

Cash Flows from Investing Activities. Cash flows from investing activities totaled $6.03 million during 2004 compared to cash flows used in investing activities of $2.95 million during 2003. The investing cash flows generated in 2004 were from the proceedssale of available for sale securities received from Geron for goods and services and the sale of our non-life science instrumentspecialty oligoneucleotide manufacturing facility and reductions in other assets that were offset by purchases of property and equipment.

Cash Flows from Financing Activities. Cash flows from financing activities totaled $6.00 million during 2004 compared to $7.30 million during 2003. The cash from financing activities in 2004 relate primarily to net draws on our Credit Line and proceeds from the Term Note that were offset by payments of long-term debt.

Obligations and Commitments

Our ongoing capital commitments consist of debt service requirements and obligations under capital leases. The following table sets forth our contractual obligations as of December 31, 2004 along with cash payments due in each period indicated (in thousands):

   Payments Due by Period

   2005

  2006

  2007

  2008

  2009 and
Thereafter


Credit Line(1)

  $5,948  $—    $—    $—    $—  

Term Note(1)

   850   900   850   —     —  

Operating lease payments(2)

   1,958   1,382   486   187   372
   

  

  

  

  

Total contractual obligations

  $8,756  $2,282  $1,336  $187  $372
   

  

  

  

  

The following table sets forth our contractual obligations as of September 30, 2005 along with cash payments due in each period indicated (in thousands):

   Payments Due by Period

   Total

  2005

  2006

  2007

  2008

  2009 and
thereafter


Credit Line(1)

  $6,588  $6,588  $—    $—    $—    $—  

Term Note(1)

   1,675   —     875   800   —     —  

Operating lease payments(2)

   2,584   359   1,233   443   189   360

Purchase obligations

   872   248   370   254   —     —  
   

  

  

  

  

  

Total contractual obligations

  $11,719  $7,195  $2,478  $1,497  $189  $360
   

  

  

  

  

  

(1)Interest payments under the Laurus Loans are not included in these tables. Historically, interest on these loans has been paid monthly based on outstanding debt and prevailing interest rates. In conjunction with the private placement that closed on October 31, 2005, we repaid the Term Note and Credit Line. As of November 29, 2005, we have no significant indebtedness that requires scheduled principal and interest payments. After giving effect to the repayment of the Credit Line and Term Note, total contractual obligations total $3,456 and are payable as follows: $607 in 2005, $1,603 in 2006, $697 in 2007, $189 in 2008 and $360 in 2009 and thereafter.

(2)These are gross lease commitments. Certain facilities underlying these commitments are sublet to independent third parties. As of December 31, 2004, annual rents from these tenants were expected to total $320, $170 and $20 in 2005, 2006 and thereafter, respectively. As of September 30, 2005, annual rents from these subtenants were expected to total $40, $172, and $16 in for the remainder of 2005, 2006 and thereafter, respectively.

At September 30, 2005 and December 31, 2004, we had firm commitments totaling $0.88 million and $0.80 million, respectively, to purchase components used in our WAVE Systems.

Off Balance Sheet Arrangements

At September 30, 2005 and December 31, 2004, we did not have any relationships with unconsolidated entities or financial partnerships, such as entities often referred to as structured finance or special purpose entities, which would have been established for the purpose of facilitating off-balance sheet arrangements or other contractually narrow or limited purposes.

Critical Accounting Policies

Accounting policies used in the preparation of the consolidated financial statements may involve the use of management judgments and estimates. Certain of our accounting policies are considered critical as they are both important to the portrayal of our financial statements and they require significant or complex judgments on the part of management. Our judgments and estimates are based on experience and assumptions that we believe are reasonable under the circumstances. Further, we evaluate our judgments and estimates from time to time as circumstances change. Actual financial results based on judgment or estimates may vary under different assumptions or circumstances. The following are certain critical accounting policies that may involve the use of judgment or estimates.

Allowance for Doubtful Account. Accounts receivable are shown net of an allowance for doubtful accounts. In determining an allowance for doubtful accounts, we consider the following.

The age of the accounts receivable,

Customer credit history,

Customer financial information,

Reasons for non-payment, and

Our knowledge of the customer.

If our customers’ financial condition were to deteriorate, resulting in a change in their ability to make payment, additional allowances may be required.

Inventories. Inventories are stated at the lower of cost or market. Cost is computed using standard costs for finished goods and average or latest actual cost for raw materials and work in process. Inventories include chemical building blocks for synthetic nucleic acids (know as phosphoramadites) and the raw materials to produce phosphoramadites. We periodically evaluate our inventory of phosphoramadites to determine whether they continue to meet quality and other specifications and over what time period such products are expected to be sold. Product that does not meet quality and other specifications can generally be re-worked to enhance purity. Costs to purify such product line and related yield losses are expensed as incurred. Product that is not expected to be sold within 12 months is classified as a long-term other assets.

Depreciation and Amortization of Long-Lived Assets. Our long-lived assets consist primarily of property and equipment, patents, intellectual property and capitalized software development costs. We believe the useful lives we assigned to these assets are reasonable. If our initial public offering. The financingassumptions about these assets change as a result of events or circumstances and we believe the assets may have declined in value we may record impairment charges resulting in an increase to operating expenses. Property and equipment are carried at cost. Depreciation and amortization are computed using the straight-line method over the estimated useful lives of the related assets ranging from 3 to 15 years. We capitalize external and in-house legal costs and filing fees associated with obtaining patents on its new discoveries and amortizes these costs using the straight-line method over the shorter of the legal life of the patent or its economic life, generally 17 years, beginning on the date the patent is issued. Intellectual property, which is purchased technology, is recorded at cost and is amortized over its estimated useful life.

Impairment of Long-Lived Assets. We evaluate goodwill for impairment on an annual basis. We assess the recoverability of long-lived assets whenever events or changes in circumstances indicate that the carrying amount of an asset may not be recoverable. These computations utilize judgments and assumptions inherent in our estimate of future undiscounted and discounted cash inflowsflows to determine recoverability of these assets. If our assumptions about these assets were to change as a result of events or circumstances, we may be required to record an impairment loss.

Revenue Recognition. Revenue on the sales of products is recognized in 1999 were dueaccordance with the terms of the sales arrangement. Such recognition is based on receipt of an unconditional customer order and transfer of title and risk of ownership to the customer, typically upon shipment of the product. Our sales terms do not provide for the right of return unless the product is damaged or defective. Revenues from certain services associated with our analytical instruments, to be performed subsequent to shipment of the products, is deferred and recognized when the services are provided. Such services, mainly limited to installation and training services that are not essential to the functionality of the instruments, typically are performed in a timely manner subsequent to shipment of the instrument.

Recently Issued Accounting Pronouncements

On December 16, 2004, the Financial Accounting Standards Board (FASB) issued Statement of Financial Accounting Standards (“SFAS”) No. 123R, “Share-Based Payment.” SFAS No.123R addresses the accounting for share-based payment transactions in which an enterprise receives employee services in exchange for (a) equity instruments of the enterprise or (b) liabilities that are based on the fair value of the enterprise’s equity instruments or that may be settled by the issuance of convertible notessuch equity instruments. SFAS No. 123R eliminates the ability to account for share-based compensation transactions using Accounting Principles Board Opinion No. 25 and generally requires that provided net proceeds of $11.4 million in March 1999, and net other borrowings. Our capital expenditures budgetsuch transactions be accounted for 2000 and 2001 is approximately $5.0 million. Capital expenditures for the current year are expected to relate to facility and equipment improvements related to our life sciences business. Research and development expenses are budgeted at approximately $7.2 million and $8.5 million, respectively for 2000 and 2001.using a fair-value-based method. We expect to devote substantial capital resourcesadopt this standard on January 1, 2006. We are assessing the final impact of this standard on our financial position, results of operations or cash flows. This assessment includes evaluating option valuation methodologies and assumptions as well as potential changes to continue our researchcompensation strategies.

On November 24, 2004, the FASB issued SFAS No. 151, “Inventory Costs – an amendment of ARB No. 43”. SFAS No. 151 requires idle facility expenses, freight, handling costs, and development efforts,wasted material (spoilage) costs to expand our marketingbe excluded from the cost of inventory and sales and customer support activities, and for other general corporate activities. Our capital requirements dependexpensed when incurred. It also requires that allocation of fixed production overhead to be based on a numberthe normal capacity of factors, including the level of our research and development activities, market acceptance of our products, the resources we devote to developing and supporting our products, and other factors. We believe that our current cash balancesproduction facilities. SFAS No. 151 will be sufficient to fundeffective for the Company on January 1, 2006. We are assessing the final impact of this standard on our financial position, results of operations through at least fiscal year 2003. During or after this period, if cash generated by operations is insufficient to satisfy our liquidity requirement, we may need to sell additional equity or debt securities, or obtain additional credit arrangements. IMPACT OF INFLATION flows.

Impact of Inflation

We do not believe that price inflation had a material adverse effect on our financial condition or results of operations during the periods presented. 22 RECENT ACCOUNTING PRONOUNCEMENTS In June 1998,

Foreign Currency Rate Fluctuations

During the Financial Accounting Standards Board issued Statement of Financial Accounting Standards No. 133, "ACCOUNTING FOR DERIVATIVE FINANCIAL INSTRUMENTS AND FOR HEDGING ACTIVITIES" (SFAS No. 133). This statement, which is effective for the Company beginning on January 1, 2001, requires the recognition of all derivative financial instruments as either assets or liabilities in the statement of financial position and measurement of those instruments at fair value. Management does not believe the adoption of SFAS No. 133 willlast three fiscal years, our international sales have a material effect on our financial statements. QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISK The primary objective of our investment activities is to preserve principal while at the same time maximizing the income we receive from our investments without significantly increasing risk. Some of the securities that we invest in may have market risk. This means that a change in prevailing interest rates may cause the market value of the investment to fluctuate. For example, if we hold a security that was issued with a fixed interest rate at the then-prevailing rate and the prevailing interest rate later rises, the market value of our investment will probably decline. To minimize this risk in the future, we intend to maintain our portfolio of cash equivalents and short-term investments in a variety of securities, including commercial paper, money market funds, government and non-government debt securities. The average duration of all of our investments in 2000 was less than one year. Due to the short term nature of these investments, we believe we have no material exposure to interest rate risk arising from our investments. Therefore, no quantitative tabular disclosure is presented. FOREIGN CURRENCY RATE FLUCTUATIONS Approximately 50%represented approximately 50-65% of our net sales. These sales have been to customers in the United States. While we do sellof products in many foreign countries most of these sales are mainly completed by our wholly-owned subsidiary,in either British Pounds Sterling or the Euro. Additionally, we have two wholly owned subsidiaries, Transgenomic, LTD., and are made in itsCruachem, LTD., whose operating currency is British pounds sterling, orPounds Sterling and the Euro. Results of operations for the Company'sCompany’s foreign subsidiarysubsidiaries are translated using the average exchange rate during the period. Assets and liabilities are translated at the exchange rate in effect on the balance sheet dates. As a result the Company iswe are subject to exchange rate risk, however, at this time management feelsrisk. The operational expenses of our foreign

subsidiaries help to reduce the currency exposure we have based on our sales denominated in foreign currencies by converting foreign currencies directly into goods and services. As such, we feel do not have a material exposure to foreign currency rate fluctuations. 23 BUSINESS OVERVIEW We provide innovative tools for DNA separationfluctuations at this time.

Quantitative and analysisQualitative Disclosures About Market Risk

Our Laurus Loans carried a variable interest rate of 2% over the prime rate or a minimum of 6%, and therefore, expose us to researchers seeking to discover and understand variationsinterest rate risk. Based on the outstanding balance of these loans at December 31, 2004 of $8.50 million, a 1% increase in the human genetic codeprime rate would increase our interest expense by approximately $0.09 million annually. We repaid the entire principal balance of the Laurus Loans on October 31, 2005 with the proceeds from the 2005 Private Placement. As a result, the Laurus Loans have been cancelled and are no longer available to us. Accordingly, we no longer have any borrowings which subject us to material interest rate risk.

BUSINESS

Company Overview

We develop, manufacture and sells innovative products for the relationshipanalysis, synthesis and purification of these variations to disease. Priornucleic acids through two operating segments, BioSystems and Nucleic Acids.

The BioSystems operating segment develops, assembles, manufactures and markets versatile products and provides analytical services to the formationmedical research, clinical and pharmaceutical markets for use in genetic variation analysis. Products and services are sold through a direct sales force in the United States and throughout much of Transgenomic, Inc., we conducted our business operationsWestern Europe. For the rest of the world, products and services are sold through an Iowa corporation knownmore than 25 dealers and distributors located in those local markets. Net sales from this operating segment are categorized as CETAC Holding Company, Inc.bioinstruments, bioconsumables and discovery services.

Bioinstruments. The flagship product of the BioSystems operating segment is the WAVE system which has broad applicability to genetic variation detection in both molecular genetic research and molecular diagnostics. There was a world-wide installed base of 1,269 WAVE systems as of September 30, 2005. Additionally, this operating segment utilizes its various subsidiaries. CETAC Holding Company, Inc. designed,sales and distribution network to sell a number of independent, third party equipment platforms. Service contracts to maintain installed systems are sold and supported by technical support personnel.

Bioconsumables. The installed WAVE base generates a demand for consumables that are required for the system’s continued operation. These products are developed, manufactured and sold several different typesby this operating segment. In addition, the BioSystems operating segment manufactures and sells consumable products that can be used on multiple, independent platforms. These products include SURVEYOR Nuclease and a range of non-life sciences instrumentsHPLC separation columns.

Discovery Services. The BioSystems operating segment provides various genetic laboratory services through a contract research lab in Gaithersburg, Maryland and a second laboratory in Omaha, Nebraska that prepare samplesoperates in a Good Laboratory Practices (“GLP”) compliant environment and is certified under the Clinical Laboratory Improvement Amendment. The services provided primarily include (1) genomic biomarker analysis services to pharmaceutical and biopharmaceutical companies to support preclinical and clinical development of material so that they may be more easily analyzed by,targeted therapeutics; and efficiently introduced into(2) molecular-based testing apparatus. Wefor hematology, oncology and certain inherited diseases for physicians and third-party laboratories.

The Nucleic Acids operating segment develops, manufactures and markets chemical building blocks for nucleic acid synthesis to biotechnology, pharmaceutical and oligonucleotide synthesis companies and research institutions throughout the world. These products are produced primarily in this operating segment’s only facility in Glasgow, Scotland. Prior to November 11, 2004, this operating segment also manufactured synthesized segments of nucleic acids (known as oligonucleotides) in a facility in Boulder, Colorado. On November 11, 2004, the assets associated with this facility were sold to an unaffiliated, third party. As a result, the Nucleic Acids operating segment no longer manufactures and sold chromatographysells these specialized oligonucleotides. A substantial portion of this operating segment’s revenues during 2005 and 2004 have been derived from one customer.

Business Strategy

Since inception, our business strategy has been to provide products and services to biomedical researchers, medical institutions, diagnostic and pharmaceutical companies that are used in a variety of testing applications, such as food analysis and environmental testing. On July 1, 1997, we consolidated these companies into a new Delaware corporation known as Transgenomic, Inc., that was formedtied to develop, manufacture and market our new DNA separation and analysis products in addition to continuing the non-life sciences business of CETAC Holding Company, Inc. and its subsidiaries. In 1999, we acquired, through our subsidiary in the United Kingdom, substantially all of the assets of Kramel Biotech International, Limited, a manufacturer of laboratory consumables used advancements

in the field of molecular biology. Ourgenetics. The movement in the field of genomics, and related market opportunities, has shifted from gene discovery to the analysis of variations in gene sequences. Researchers are beginning to link variations in the gene sequences to disorders and diseases. Accordingly, a principal component of our strategy has been to establish our WAVE System as the industry standard in the genetic research market and to develop additional markets for the WAVE System such as diagnostics. Through an expanding base of installed systems, we expect to increase the sales of consumable products used with the WAVE.

We have also historically sought to position ourselves as a partner to biopharmaceutical and pharmaceutical companies in the early stages of their efforts to develop genomic-based diagnostics and therapeutics, thereby allowing us to participate in future successes of products derived from the expanding knowledge of genomics. While we continue to believe that the long-term prospects for this business plan issegment are favorable, we concluded that near-term revenues from this segment would generate neither positive cash flows nor profits from operations. Consequently, in the second quarter of 2004, our Board of Directors directed management to focus onexplore strategic alternatives for our Nucleic Acids operating segment, including the genomics segmentpossible sale of one or both of the life sciences industryfacilities in Glasgow, Scotland and the development, marketing and support of our proprietary technology for the automated separation and analysis of DNA. Therefore,Boulder, Colorado. On November 11, 2004, we sold the assets associated with our non-life sciences instrument product linespecialty oligonucleotide manufacturing facility in May 2000. INDUSTRY BACKGROUND DNA AND GENOMICS-BASED RESEARCH The human body is composed of billions of cells each containing deoxyribonucleic acid, or DNA,Boulder, Colorado. We continue to operate our facility in Glasgow, Scotland which encodes the basic instructions for cellular function. The complete set of DNA is called the genome, or genetic code. The human genome is composed of 23 pairs of chromosomes which are further divided into over 100,000 smaller regions called genes. Genes areprimarily produces chemical building blocks used in the cell as the template for the productionsynthesis of proteins,nucleic acids. However, we have taken steps to consolidate these operations and it is these proteins that direct cell function that are ultimately reflected in the individual traits of the person. Each gene is made up of four different chemicals known as nucleotide bases which are commonly designated by the first letter of their chemical names, or G, C, A and T. The entire human genome contains approximately 3 billion of these nucleotides arranged in order along the two complimentary strands of the DNA molecule. The order of the nucleotides along these strands is known as the DNA sequence, and it is this sequence that determines the function of the genes. Therefore, any variation in the DNA sequence of a particular gene may result in a change in the cell function controlled by that gene. These changes, known as genetic mutations or polymorphisms, therefore, are often the cause of disease or make an individual more susceptible to disease. Genomics is the systematic and comprehensive analysis of the sequence, structure and function of the genes which comprise the genome with the objective of identifying and understanding the role of genes in human physiology and disease. During the last ten years, an intense effort has been underway to determine the sequence of genes in the entire human genome and this basic research is expected to be completed in the next few years. Both the U.S.-government sponsored Human Genome Project and private researchers have been involved in this effort which has provided an immense amount of sequencing information for human DNA. While these efforts will provide a basic blueprint of the human genome, they have necessarily been centered on determining the DNA sequence of a limited number of individuals. Therefore, this fundamental sequencing data will not, by itself, provide much information about the function of genes and their relationship to disease. This information will only be developed through the intense study of genetic variation. Accordingly, genomics researchers are now attempting to understand variations in this DNA sequence information and how it correlates to diseasereduce costs in order to develop new drugs, treatmentsbetter align operating expenses with anticipated revenues.

Our business strategy going forward is to achieve revenue growth in our BioSystems operating segment and diagnostic methods. 24 IMPORTANCE OF THE DISCOVERY OF GENETIC VARIATION There areto better align our cost structure with anticipated revenues in both of our operating segments.

Sales and Marketing

We have sold our products to customers in over 30 countries. We use a variety of mutations known to occur in DNA sequences. The most common form of genetic mutation involves a change in a single nucleotidedirect sales and is called a single nucleotide polymorphism, or SNP. Other types of genetic mutation include the insertion or deletion of several nucleotides and translocation or repetition of nucleotides. The identification and understanding of these mutations, including SNPs, are important because they may indicate predisposition to a variety of diseases. Since even a single mutation of a nucleotide can have a major role in human disease, efforts to understand and analyze genetic mutations have recently intensified. After SNPs or other mutations are discovered, their potential relevance to disease must be validated by determining the frequency of mutation in different segments of the population. Some diseases, such as muscular dystrophy, are caused by DNA mutations in a single gene. Many common diseases, such as diabetes, cancer and obesity, are caused by mutations in more than one gene. Since a single mutation or multiple mutations may be requiredsupport staff for a particular disease or trait to manifest itself, it is necessary to measure a sizable population of these mutations in order to be able to predict with confidence the association of a mutation with a particular disease or trait. Therefore, the need to discover new genetic variations will be ongoing as the variety of human diseases are studied and their correlation with different populations or groups of individuals is analyzed. In order to do this on the scale that likely will be required, researchers will need technologies that provide faster sample analysis, greater accuracy and reliability and lower costs than technologies that they have historically used. It will be especially important that the technology used by these researchers be able to detect all types of mutations, including SNPs, insertions and deletions, translocations and repetitions, whether the existence of the mutation is known or unknown. It is this need that we believe creates a market opportunity for our WAVE System and its ability to detect genetic mutations quickly, accurately and inexpensively. CURRENT TECHNOLOGIES FOR MUTATION ANALYSIS Current widely-used DNA mutation analysis technologies were originally developed primarily for collecting DNA sequence information and not for the discovery of mutation and other genetic variations. As these methods have been modified for use in SNP and other mutation analysis, several limitations have become clear. Current technologies for DNA analysis include the following: - GEL ELECTROPHORESIS. Gel electrophoresis is primarily a manual separation technique for DNA which uses an electrical current to cause DNA fragments to migrate over a gel. Because different lengths of DNA will migrate at different speeds, they will be separated by this process. The gel is transferred to a fluorescence-imaging camera and photographed or scanned into a computer so that the DNA can be visualized. If a particular fragment of DNA is required, then it must be cut from the gel with a scalpel, the section can be melted to a liquid or the DNA can be drawn out of the gel and into the surrounding electrolyte with a further application of an electric field. Gel electrophoresis provides good separation resolution and the cost of associated equipment is relatively inexpensive. - CAPILLARY ELECTROPHORESIS. Capillary electrophoresis may besales in the form of long thin capillaries or embodied in a chip. This technology separates DNA by passing an electric current through a capillary tube filled with a linear polymer and an electrolyte. DNA is introduced into the top of the capillary and the current is applied. This method is generally faster than conventional gel electrophoresis and allows for simultaneous detection of results. - CHIP ARRAY. Chip Array technology uses short fragments of single-strand DNA that are attached to small squares on the surface of a "chip" so that strands within a square have the same DNA sequence, but this sequence is different in each separate square. The sample strand of DNA is introduced to this chip and binds, or hybridizes, specifically only where it matches the sequence attached to one of the squares. In this way a match can be found, if 25 it exists, from a very large array of candidate DNA sequences. The chip primarily identifies sequences which are known prior to analysis. - MASS SPECTROMETRY. Mass spectrometry is a technique that applies a charge to the sample and introduces the ionized sample into a chamber that measures the mass per charge of each type of molecule. The mass of the sample and various fragments produced indicates the identity of the molecule that was introduced into the instrument. Although the sequence of the DNA is not measured when using mass spectrometry, the nucleotides making up the molecule bases can be measured. LIMITATIONS OF CURRENT TECHNOLOGIES Although these technologies are well accepted and established, none is ideally suited to the analysis of sequence mutations. The limitations of current methods include the following: - GEL ELECTROPHORESIS. Gel electrophoresis is a time-consuming, labor intensive process. Sample introduction, pouring of gels, separation, identification of bands, and recovery of DNA must all be done manually. As a result, the analysis of a single sample can often take many hours. In addition, there is no real-time monitoring of the process and this can cause problems. For example, if an insufficient sample were used for the analysis, a researcher would only become aware after several wasted hours of experimentation. - CAPILLARY ELECTROPHORESIS. Capillary electrophoresis can automate the gel electrophoresis process. However, it is difficult to control the conditions needed to determine genetic variation. Capillary electrophoresis also requires the attachment of detection-enhancing fluorescent molecules to the DNA. Fluorescent reagents are relatively expensive and their use requires further manipulation of the DNA molecules prior to analysis, thereby increasing the amount of time per sample spent by a researcher. In addition, the small quantities of DNA separated by capillary electrophoresis are usually not sufficient for sequencing of the DNA or cloning applications. - MASS SPECTROMETRY. Mass spectrometry is only a detection method. It does not incorporate any separation capability, which is essential for analysis of multiple DNA molecules needed for mutation detection, as well as for purification. In addition, this method cannot directly analyze large DNA fragments or double-stranded DNA due to its inflexibility and fundamental limitations. - CHIP ARRAY. Because this technology relies on sample DNA binding to a DNA strand with a known sequence attached to the chip, it is capable of detecting only known mutations matching the sequence on the chip. In addition, the binding process is unreliable when many mutations are to be detected in the sample. These disadvantages limit the usefulness of these other techniques for the efficient discovery of unknown genetic variation. While some types of gel electrophoresis and capillary electrophoresis can be used to determine the sequence of nucleotides on a gene fragment and thereby detect unknown mutations, they are expensive and labor-intensive because the researcher must identify and compare the sequence of the large number of nucleotides making up both the sample gene and the standard gene without knowing if a mutation exists or where the mutation may be. Insertions, deletions, translocations and repetitions are very difficult to detect using any of these technologies. THE TRANSGENOMIC SOLUTION We believe our WAVE System, which incorporates our proprietary DNASep technology and associated software, chemical reagents and other consumable products, will become a leading tool to analyze genetic variation. The WAVE System allows researchers to analyze both known and unknown genetic mutations faster, with more accuracy and at a lower cost than other commercially available techniques. The WAVE System enables a researcher to detect the presence of a mutation without the need to determine the DNA sequence of the gene being studied, allowing the screening of a large number of samples to identify mutations without the need to indiscriminately sequence all of the 26 samples. Only those samples which are determined to contain a mutation require further sequencing work in order to determine the precise change in the DNA sequence. Therefore, the use of the WAVE System can result in a significant savings of time and cost. We believe key benefits of the WAVE System include the following: - HIGH SPEED. DNA separation and analysis using our WAVE System can be performed faster than current methods, depending on the type of research being conducted. Separation times using our DNASep columns average approximately 5-7 minutes per sample and can be as short as 3 minutes, depending on the application. After the separation, results are immediately available for quantification, analysis, reporting and archiving. - IMPROVED DATA ACCURACY. Our WAVE System produces more accurate and consistent data than other existing techniques for mutation analysis. Based on published reports, accuracy in discovery of known and unknown mutations is greater than 95% with the WAVE System. The higher level of data quality achievable with the WAVE System is extremely valuable to the life sciences researcher. - REDUCED COST. Because our WAVE System is completely automated, the amount of time per sample spent by a researcher is greatly reduced. The WAVE System analyzes very small DNA samples and does not require additional sample purification. This allows samples to be analyzed with a smaller volume of chemical reagents than other methods. In addition, the WAVE System can detect DNA mutations directly without the use of expensive fluorescent tags or markers required by other techniques. Savings in labor, reagents and tags significantly reduce the costs per analysis over current methods. - AUTOMATION AND EASE OF USE. The WAVE System is fully automated and easy to operate. A multiple number of amplified DNA samples can be loaded into the WAVE System's autosampler. Once loaded, the appropriate application is chosen by the researcher and the WAVE System can automatically introduce the sample, conduct the DNA separation and analyze the results. Unlike other techniques, no purification or other additional preparation of the DNA sample is necessary. With the addition of a fragment collector, the WAVE System will automatically collect DNA material for further analysis. The entire process is controlled by our proprietary WAVEMaker software. This aspect of the WAVE System can significantly enhance the productivity of a genomics researcher. - DISCOVER NEW MUTATIONS. WAVE System technology can efficiently discover new mutations in a sample without prior knowledge of the mutation or its location. The WAVE System is uniquely well-suited to the discovery of insertions and deletions because it does not depend on knowing the DNA sequence in order to detect the mutation. Other than sequencing, most genotyping methods require prior knowledge of the location of the mutation. Compared to sequencing, which requires the researcher to determine and compare the sequence of a large number of nucleotides making up both the sample gene and the standard gene to detect unknown mutations, the WAVE System displays mutations, whether previously known or unknown, as a vertical spike, or peak, on a simple graph. The ability to accurately detect the presence of mutations allows for the screening of large fragments of DNA without time-consuming and cumbersome sequencing of the entire fragment. - SCALABILITY. Our bench top WAVE System is scalable depending on the research problem to be solved. The DNASep separation columns are available in different sizes depending on the application required. 27 STRATEGY We intend to be the leading provider of technology platforms which enable life science researchers to discover and understand variations in the human genetic code, or genome, in order to accelerate and improve drug development and diagnostics. Key elements of our strategy are as follows: - FOCUS ON THE GENETIC VARIATION DISCOVERY MARKET. Our current focus is to promote the use of our WAVE System by researchers involved in the discovery and analysis of genetic variation. The investment in genomics research is large and growing, and the corresponding need to analyze genetic variations has led to increased demand for new technologies such as the WAVE System. We believe the WAVE System significantly increases research productivity and may accelerate drug development and diagnostics. - ESTABLISH THE WAVE SYSTEM AS THE INDUSTRY STANDARD. We are focusing our initial marketing efforts on large well-known academic and commercial research institutions to establish the WAVE System as the industry standard for mutation analysis. We believe we are the first to bring high performance DNASep micro-bead technology to the market and have sold instruments to key genomics researchers to gain validation of our technology, which has resulted in the publication of over 60 articles in numerous scientific journals discussing the WAVE System. A key component of our strategy is to maintain a worldwide sales organization that provides technical support on a local level. We plan to increase the number of our sales teams composed of sales personnel, application scientists and technical support persons. In addition, because we believe that a major factor in ensuring the success of our products is to provide qualified technical support on a local level, we expect to increase the number of technical support representatives and application scientists. - INCREASE CONSUMABLE SALES. We expect that our expanding base of installed WAVE Systems will result in recurring sales of our associated consumable products which include our proprietary columns and reagents. Sales of our consumable products over the next five years should increase as a proportion of our net sales. In order to support the expected increase in consumable sales, we have dedicated manufacturing facilities in California, Nebraska and the U.K. - PENETRATE NEW MARKETS. Our WAVE System may be used for purposes other than genetic mutation discovery research. These other potential uses represent additional market opportunities that we intend to pursue. For example, a number of companies produce short single-strand DNA fragments, known as oligonucleotides, with a known sequence and sell them to genetic researchers who use them in research and other applications. When synthesizing oligonucleotides, it is important that the single-stranded DNA fragments do not contain fragments with unwanted DNA sequences. The WAVE System's ability to separate and purify DNA fragments could be used by the synthesizers of oligonucleotides to produce a more consistently pure product. We believe that this will become an important new market for the WAVE System. Another potential new market for the WAVE System will be the genetic screening market. This market consists primarily of hospitals and other medical facilities that could use the WAVE System to screen tissue or blood samples for mutations known to be related to genetic disease. We believe that the ability of the WAVE System to screen genetic mutations quickly, accurately and economically can make it a useful tool for this market. It will allow researchers to use the validated technology used for the original mutation discovery work to screen for mutations in a larger population. We are in the process of designing specific software and hardware improvements to adapt the WAVE System specifically for these new market opportunities. We expect these improvements to be available within the next 24 months. 28 - BUILD A SUBSTANTIAL INTELLECTUAL PROPERTY ESTATE. We pursue an intellectual property strategy of licensing patents and pursuing patent protection for our inventions. We currently hold 22 U.S. patents and 18 foreign patents and one non-exclusive license for a U.S. patent. We also have pending applications for 28 U.S. patents and 54 foreign patents. These issued and pending patents are directed at our DNA and related research technologies, and cover separation chemistry, molecular biology, algorithms, instruments and software. We believe that our strong intellectual property estate will continue to be an important competitive advantage. OUR TECHNOLOGY AND PRODUCTS Our WAVE System is a versatile system that can be used for mutation detection, size-based double-strand DNA separation and analysis, single-strand DNA separation and analysis and DNA purification. Because of this versatility, the WAVE System can essentially replace the use of traditional gel electrophoresis in the molecular biology laboratory. Our patented technology uses a process known as high performance liquid chromatography to separate DNA material so that genetic variation may be identified and analyzed. In this process, DNA is injected into a special tube or column containing microscopic polymer beads. These micro-beads have special surface chemistries that cause the DNA molecules to attach to the surface of the beads. A chemical reagent is then pumped through the column under carefully controlled pressure and temperature conditions causing the DNA molecules to be selectively released from the beads so that they can be separated and measured. Our proprietary software controls the entire process by computer and produces the results of the operation in an easy-to-read chart format. Once the DNA sample is loaded into the instrument and necessary data is entered into the software, the process requires virtually no additional input from the researcher. By using our patented DNASep columns and specifically-formulated reagents that we have developed for various research applications, the researcher is able to achieve a consistent high-quality result. Our WAVE System includes the following components: - an autosampler (automatically introduces the DNA sample into our WAVE instrument) - a pump (pumps sample and reagents through the DNASep column and instrument) - a DNASep column (separates DNA fragments) - a column oven (controls the temperature of the DNASep column) - a detector (detects and measures DNA coming off the column) - a fragment collector (collects high purity DNA fragments of interest) - a personal computer and WAVEMaker Software (used for instrument control, experiment design, data collection, data analysis, and reporting) 29 [DIAGRAM OF COMPONENTS OF WAVE SYSTEM] The basic operation of the WAVE System is described below: DNA SAMPLE PREPARATION. A sample of the DNA fragment of interest is first extracted from a biological sample such as tissue or blood. Extraneous proteins are removed from the DNA sample and the sample is placed into a multi-well plate along with chemicals or reagents. A targeted DNA sequence is then copied by repeated cycles of heating and cooling in order to produce enough of the targeted sequence so that it can be detected. This replication process is known as polymerase chain reaction, or PCR, amplification. After the sample has been amplified, the sample DNA fragment may be mixed with "normal" DNA fragments that have a known sequence of nucleotides. The sample is then heated to cause the two strands of the DNA molecules in both the sample DNA and the normal DNA to separate from each other. The mixture is then cooled so that the strands reattach to each other. Because they are mixed together, the single-strand DNA from the sample DNA and the normal DNA will, in some cases, recombine with each other. If the sample DNA has a sequence of nucleotides that differs from the normal DNA, some of the recombined strands will not completely match and, therefore, will not bind completely. As a result, both the mismatched, or heteroduplex, DNA fragments and the correctly matched, or homoduplex, DNA fragments will be present. On the other hand, if the sample DNA has the same sequence of nucleotides as the normal DNA, all of the recombined strands will match and bind completely and only homoduplex DNA fragments will be present. WAVE SYSTEM SAMPLE INTRODUCTION AND SEPARATION PROCESS. A sample plate containing DNA is inserted directly into the WAVE System's autosampler. The autosampler takes a small volume of the sample and injects it into the DNASep column containing the micro-beads. Due to the chemical affinity of the DNA to the surface chemistry on the micro-beads in the column, the DNA attaches itself to the micro-beads. After the sample is injected into the instrument, a mixture of reagent fluids is pumped into the column at specified reagent concentrations and temperature conditions. As the reagents are pumped through the column, DNA fragments are released and separated from each other. The DNA fragments flow from the DNASep column and through an ultraviolet or a fluorescence detector, which then measures and reports the passage of the DNA fragments of interest. Depending on the mode of operation, DNA fragments can be identified and measured to determine whether they are mutant or normal, or a specific DNA size or type. The separation and detection process continues until the entire DNA sample mixture is separated into individual fragments. Any fragment of interest can be collected for further study. 30 MODES OF OPERATION. DNA can be separated using three different modes by controlling the oven temperature. These modes include the following: - NON-DENATURING MODE. This mode uses relatively low temperature so that no melting, or denaturing, of the double-strand DNA occurs. This allows double-stranded DNA fragments to be separated by the number of nucleotides making up the fragment, with the shorter DNA fragments being first released from the column and increasingly longer fragments of DNA being released in ascending size order until the entire sample is separated. The high-resolution separation and purification of fragments can be used for high-purity cloning, sequencing or PCR amplification. Tests that are based on fragment length also use this mode. - PARTIAL-DENATURING MODE. The partial-denaturing mode is used for detecting genetic variation. In this mode, the WAVE System uses temperatures ranging from 50 DEG.C to 65 DEG.C to partially melt, or denature, the double-strand DNA. Because mismatched, or heteroduplex, DNA fragments will melt at a slightly lower temperature than homoduplex DNA fragments, they will be released first from the DNASep column, followed by the release of the homoduplex DNA fragments. If there was no sequence mutation in the sample DNA, only homoduplex fragments will be present, all of which will be released from the DNASep column at the same time. As the release of the DNA fragments is detected, it will be depicted by the WAVEMaker software as a single peak on a graph. However, if there was a sequence mutation in the sample DNA, both homoduplex and heteroduplex DNA fragments will be present. Because homoduplex and heteroduplex DNA fragments will release from the DNASep column at different times, these distinct release times will result in a second peak on the graph. - FULL-DENATURING MODE. The full-denaturing mode is used for the analysis of single-strand DNA and RNA (special molecules that transmit genetic information inside of a cell) where it is necessary to reduce the interaction of the two complementary strands of DNA with each other. In this mode, temperatures in excess of 70 DEG.C are used to separate single-strand DNA or RNA molecules according to sequence and size. DETECTION. The standard WAVE System uses ultraviolet, or UV, detection. UV detection is highly sensitive and can be used for all applications with standard PCR amplification. By adding fluorescence detection to our system, we can further decrease the amount of DNA needed for analysis. In this process, special fluorescent molecules, or tags, are attached to specific points in the DNA being analyzed. This makes it possible to detect fluorescently labeled DNA fragments from extremely low sample concentrations or from samples with low PCR amplification. FRAGMENT COLLECTION. Purified DNA fragments can be collected for PCR amplification, sequencing or for cloning. Cloning is a process where bacteria is used to grow a large amount of specified DNA fragments. It is important that the DNA material used for cloning is very pure so that only the specified DNA material is found in the bacteria colonies. Amplification and sequencing also benefit from highly purified DNA fragments. WAVEMAKER SOFTWARE. Our WAVEMaker Software integrates the instrumentation control and data acquisition functions of the WAVE System. The software performs several functions including the formatting and presentation of data. Our WAVEMaker Software provides logical input and output of instrument data that is easily understood by researchers familiar with conventional gel-based technology. We are working to further refine the software component of the WAVE System to make it easier to operate for a broader market of end users. WAVEMaker Software enables the user to choose a specific application. The clear display allows the user to set up the procedure in a matter of minutes. Customized protocols can easily be created and saved to facilitate future analyses. Point mutation detection can be performed by importing the sequence or size of the DNA fragment of interest into WAVEMaker Software. 31 The following diagram presents a sample screen taken from our WAVEMaker Software. [PICTURE OF COMPUTER SCREEN SHOWING WAVEMAKER SOFTWARE] PRICING. This integrated WAVE System is priced from $60,000 to $100,000 depending on features and accessories. The price is dependent upon user selected options, which include fragment collection, various detector configurations and software versions. WAVE OPTIMIZED MOLECULAR BIOLOGY CONSUMABLES The WAVE System requires the use of various consumable products which we manufacture and sell separately. As more WAVE Systems are sold, we expect that these consumable products will become an increasingly significant source of revenue for us. The principal consumable products used with the WAVE System are the DNASep columns and the chemical reagents that are used to carry the DNA samples though the WAVE System. Other consumables include filters and other replacement parts of the WAVE System. The DNASep columns are essentially small metal tubes which are packed with microscopic polymer beads, each of which is approximately two microns in diameter. A micron is one millionth of a meter. The surface of these micro-beads has a special chemical makeup that causes DNA molecules to adhere to them. The columns come in two sizes which are used depending on the amount of DNA being analyzed or purified. The smaller standard column sells for approximately $1,200 and the larger column sells for approximately $2,400. The WAVE System comes with one standard DNASep column which has a recommended warranted life of approximately 4,000 test cycles. Our experience to date indicates that the average customer uses between two and six columns per instrument per year. We also sell the chemical reagents used with the WAVE System. In general, these reagents are special fluids that are pumped through the columns in order to cause DNA molecules to release their 32 chemical bonds to the micro-beads under the correct conditions. Although most of these reagents are similar to those that can be obtained from various suppliers, we have developed formulas for these reagents that have been specially developed to be used in the WAVE System. By using these WAVE Optimized reagents, we believe that researchers are more likely to achieve consistent high quality results with their WAVE Systems. Some consumables are contained and packaged in convenient kits to increase ease of use and minimize possibility of user error. These kits may be used in sample preparation or automated instrument operations for particular applications. By adding different application kits, the WAVE System can perform various applications. RESEARCH AND DEVELOPMENT We continue to maintain an active program of research and development and expect to spend approximately $8.5 million on these efforts in 2001. Our research and development activities include the improvement of the DNA separation media used in our columns and the refinement of the hardware and software components of the WAVE System. In addition, we are working to understand different aspects of the chemistry of molecular biology testing and to use this knowledge to develop new molecular biology tests. Our research and development work is focused on developing additional functionality in the WAVE System that will allow us to sell into market segments other than the genetic mutation discovery market. For example, we are working on software and hardware advances that will tailor the WAVE System specifically for the analysis and purification of single-strand DNA. Short single-strand DNA, known as oligonucleotides, are used to target a known sequence of DNA in a gene. A number of companies produce oligonucleotides with a known sequence and sell them to genetic researchers who use them for PCR amplification, sequencing or other research applications and to medical facilities for diagnostic testing. When synthesizing oligonucleotides on a commercial scale, it is important to exclude fragments with unwanted DNA sequences. Our research efforts are focused on determining the quality of single-strand DNA needed for each application and on developing the appropriate instrumentation modifications, software and separation protocols for each. We expect to have WAVE Systems available for this market within 18 months. We are also developing improved methods and procedures to enable hospitals and other medical facilities to use the WAVE System to screen tissue or blood samples for mutations known to be related to genetic disease. We believe the WAVE System will be an attractive tool for this group of users because it will allow them to use the same validated methodology used to discover a mutation and its link to disease to screen for that mutation in a large population. We are working to make the screening process faster and more automated through the development of new software and improved separation media and instrumentation. We also expect to have these improvements available in the next 18 months. SALES AND MARKETING We currently sell our WAVE Systems and related consumables in major geographical markets. We target the U.S., the U.K. and most countries in Western Europe with a direct sales staff of 18 persons.Europe. For the rest of the world, we also sell our products tothrough dealers and distributors located in those local markets. We have over 25 dealers and distributors. We also maintain regionally-based technical support staffs and applications scientists to support our sales and marketing activities throughout the U.S., Europe and Japan. See Note O, "SalesEurope.

Operating segment and Product Information," to ourgeographic information is included in the consolidated financial statements for a summary of our net sales by geographic area and product group. Our marketing efforts utilize a variety of promotional channels including print advertisements, scientific conferences, trade shows, and Internet browser ads. The primary targets of our marketing efforts are life sciences researchers and medical geneticistsincluded elsewhere in academic and commercial research institutions. 33 CUSTOMERS We had sold WAVE Systems to customers in 20 countries. this Prospectus.

Customers that have purchased at least one WAVE System

Customers include numerous core laboratory facilities and a number of other leading academic and medical institutions in the U.S. and abroad, including Harvard University, Stanford University, Baylor College of Medicine, University of Chicago, Fred Hutchison Cancer Research Facility, Mayo Clinic, National Cancer Institute, National Institutes of Health, Institut Curie, University of Cambridge, Welcome Trust-Oxford University and Institut Gustave Roussy. Customersabroad. In addition, our customers also include a number of large, established U.S. and foreign pharmaceutical, biotech and biotech companies including SmithKline Beecham, Bristol-Meyers Squibb, Millennium Pharmaceuticals, Merck &commercial companies.

During the nine months ended September 30, 2005, sales to a large pharmaceutical company totaled $2.0 million and represented 10% of net sales within the BioSystems operating segment and 9% of total consolidated net sales. Sales to this customer are governed by a non-binding master services agreement dated August 22, 2002. Sales to this customer are governed by a non-binding master services agreement dated August 22, 2002. Accordingly, the amount of sales to this customer is subject to change.

During the nine months ended September 30, 2005, sales to Geron Corporation (“Geron”) totaled $1.7 million and represented 54% of net sales within the Nucleic Acids operating segment and 7% of total consolidated net sales. During 2004, sales to Geron Corporation totaled $4.15 million and represented

49% of total net sales within our Nucleic Acids operating segment and 12% of total consolidated net sales Sales to Geron are governed by a supply agreement under which Geron may pay the Company Novartisfor goods and Eli Lilly and Company. services with shares of Geron common stock. The supply agreement does not require Geron to purchase any minimum quantity of our products. Accordingly, the amount of nucleic acid products we sell to Geron is subject to change. Revenues from our Nucleic Acids business would be substantially reduced if Geron’s need for our products declined or if it decided to obtain these products from other suppliers.

No singleother customer accountedaccounts for more than 3%10% of total consolidated or operating segment net sales.

Research and Development

We maintain an active program of research and development and expect to continue to incur significant expense for these activities going forward. Our research and development activities include the improvement of the DNA separation media used in our salesWAVE System, the refinement of the hardware and software components of the WAVE System, the creation of unique enzymes and WAVE-Optimized® enzymes, and, to a lesser extent, the improvement of chemical and biochemical reaction techniques for synthetic nucleic acids.

For the nine months ended September 30, 2005 and for the year ended December 31, 2004, our research and development expenses were $1.70 million and $6.69 million, respectively. This represents a substantial reduction from our prior levels of expenditures that were $9.31 million and $12.20 million for the years ended December 31, 2003 and 2002, respectively. We expect to continue to invest in 1999. MANUFACTURING research and development activities at levels that are relatively consistent with those experienced during 2005; however, we may also curtail such activities as required.

Manufacturing

We manufacture all of our consumablebioconsumable products including our proprietary DNASep separation columns, liquid reagents, enzymes and liquid reagents.nucleic acid products. The major components of our WAVE systems are manufactured for us by a third party. We also incorporateintegrate our own modifications into the basic liquid chromatography instrument that we use in our WAVE System.hardware and software with these third party manufactured components. Our manufacturing facilities for our WAVE® systems and bioconsumables are located in Omaha, Nebraska, San Jose, California, Omaha, Nebraska, and Crewe,Cramlington, England. The nature of our instruments and bioconsumables business does not generally lend itself to tracking and reporting sales backlog.

Our phosphoramidites and related synthetic nucleic acid products are manufactured in our Glasgow, Scotland facility. Inventory for these products consists primarily of chemical building blocks for synthetic nucleic acids (know as phosphoramadites) and the raw materials to produce phosphoramadites. As of September 30, 2005 and December 31, 2004, we have classified a portion of this inventory as a long-term other asset based on its existing sales forecasts for these products. We obtain the basic liquid chromatography instrument forperiodically evaluate our WAVE System from Hitachi Instruments, Inc. This relationship allows usinventory of phosphoramadites to use Hitachi's significant manufacturing capabilitydetermine whether they continue to meet potential future increases in demand for the WAVE System without investing in expanding our own manufacturing capacity. Although our relationship with Hitachi has existed since 1997, we have recently entered into a new supply agreement with Hitachi under which they will cooperate with us in the co-development of a modified instrument for use in our WAVE System. Under the agreement, we have the exclusive rightquality and other specifications and over what time period such products are expected to market any co-developed products for DNA analysisbe sold. Product that does not meet quality and purification using our DNASep technologies. In addition, the agreement will provide for fixed pricing of the liquid chromatography instruments for our WAVE System. Our agreement with Hitachi has no fixed termother specifications can generally be re-worked to enhance purity. Costs to purify such product and we have retained the right to work with other vendors for liquid chromatography instruments. Under the agreement, there will be no transfer of intellectual property rights without a specific agreement to do so. LEGAL PROCEEDINGS Werelated yield losses are not a party, nor are any of our assets or properties subject, to any material legal proceedings. INTELLECTUAL PROPERTY expensed as incurred.

Intellectual Property

To establish and protect our proprietary technologies and products, we rely on a combination of patent, copyright, trademark and trade-secret laws, as well as confidentiality provisions in our contracts. We have implemented an aggressive patent strategy designedpresently own rights to provide us with freedom to operate and facilitate commercialization of our current and future products. We currently own 22 issued patents in the United States and have 28 pending applications, of which we have received notices of allowances for four. We also own 18 foreignmore than 80 issued patents and have 54 foreign patent30 pending applications pending. We hold an exclusive license for components ofin both the DNA separation technology used in ourU.S. and abroad. Our BioSystems operating segment products, comprising the WAVE® System under an agreement with the inventors. This license terminates in 2013. We have also entered into a non-exclusive license agreement with a U.S. university relating to DNA detection technology. The DNASep column and the systems with which it is combined are DNA compatible. The micro-beads used within the DNASep column are covered by U.S. Patent No. 5,585,236 and corresponding European patents. DNA compatible systems are free from materials which would bind with DNA and 34 interfere with the separations. Separating DNA with DNA compatible systems and related processes

consumables, are coveredprotected by U.S. Patents 5,772,889, 5,997,742, 5,972,222, 6,017,457, 6,024,878patents and 6,056,877, along within-licensed technologies that expire in various periods beginning in 2013 through 2022. Intellectual property related to our Synthetic Nucleic Acid business unit, other than production trade secrets, is almost entirely in-licensed. A number of these in-licensed patents have recently, or will soon, expire. As a corresponding foreign patent application pending. Additional patent applications for the DNA compatible column and system are pendingresult, we expect price competition in the U.S., Europe and Japan. Future products including disposable nucleic acid separation systems are covered by U.S. Patent 5,986,085 and pending U.S. and foreign patent applications. Generally, U.S. patents have a term of 17 years from the date of issue for patents issued from applications filed with the U.S. Patent Office priorNucleic Acids operating segment to June 8, 1995, and 20 years from the application filing date or earlier claimed priority dateintensify in the case of patents issued from applications filed on or after June 8, 1995. Patents in most other countries have a term of 20 years from the date of filing the patent application. Our issued United States patentsnext year. We will expire between 2009 and 2017. Our success depends to a significant degree upon our ability to develop proprietary products and technologies. We intend to continue to file patent applications and seek new licenses as wewarranted to protect and develop new products and technologies. Patents provide some degree of protection for our intellectual property. However, the assertion of patent protection involves complex legal and factual determinations and is therefore uncertain. The scope of any of our issued patents may not be sufficiently broad to offer meaningful protection. In addition, our issued patents or patents licensed to us may be successfully challenged, invalidated, circumvented or unenforceable so that our patent rights would not create an effective competitive barrier. Moreover, the laws of some foreign countries may not protect our proprietary rights to the same extent as do the laws of the United States and Canada. In addition, the laws governing patentability and the scope of patent coverage continue to evolve, particularly in areastechnologies of interest to us. As a result, there can be no assurance that patents will issue from anyour customer base in the coming years.

Competition

The markets in which our Biosystems operating segment operates are highly competitive and characterized by rapidly changing technological advances. A number of our patent applications competitors possess substantial resources and are able to develop and offer a much greater breadth of products and/or services, coupled with significant marketing and distribution capabilities. We compete principally on the basis of uniquely enabling technical advantages in specific but significant market segments.

Competition for our WAVE Systems arises primarily from applications licensed to us. In viewDNA sequencing and genotyping technologies. Competitors in these areas include Applied Biosystems, Beckman Coulter, Amersham (now part of these factors, our intellectual property positions bearGE Healthcare), Affymetrix, Agilent Technologies, Nanogen, Illumina, Sequenom, Pyrosequencing (now part of Biotage AB), Varian, and others. Competition for some degree of uncertainty. We also rely in part on trade-secret protection of our intellectual property. non-WAVE consumable products comes from numerous well-diversified life sciences reagents providers, including, among others, Invitrogen, Qiagen, Roche, Stratagene, and Promega. Our discovery services product line faces competition from a number of companies offering contract DNA sequencing and other genomic analysis services, including Genaissance Pharmaceuticals, GeneLogic, Agencourt, SeqWright, Gentris, and Perlagen. In addition, several clinical diagnostics service providers, such as Labcorp, Quest, and Specialty Laboratories, also offer related laboratory services in support of clinical trials. Finally, additional competition arises from academic core laboratory facilities.

Competition is also intense in the markets in which our Nucleic Acids operating segment functions, and increasingly driven by price. Transgenomic competes on the basis of its ability to develop and manufacture synthetic nucleic acid building blocks used to make DNA and RNA oligonucleotides. Competitors include Proligo, Degussa, Pierce Nucleic Acid Technologies, and Applied Byosystems. In addition, competition is expected in the future from new overseas entrants focusing on low cost production.

Employees

As of September 30, 2005, December 31, 2004 and December 31, 2003, we had employees focused in the following areas of our operation:

   September 30,
2005


  December 31,
2004


  December 31,
2003


BioSysytems Operating Segment

         

Manufacturing

  51  52  54

Sales, Marketing and Administration

  67  75  90

Research and Development

  10  19  31
   
  
  
   128  146  175

Nucleic Acids Operating Segment

         

Manufacturing

  16  20  45

Sales, Marketing and Administration

  8  6  8

Research and Development

  0  6  16
   
  
  
   24  32  69
   
  
  
   152  178  244
   
  
  

We attempt to protectsupplement our trade secrets by entering into confidentiality agreements with third parties, employeesworkforce through the use of independent contractors and consultants. As of September 30, 2005 and December 31, 2004, we have engaged independent contractors or consultants who provide services to us approximately equivalent to five and four full-time employees, respectively.

Our employees were employed in the following geographical locations.

   September 30,
2005


  December 31,
2004


  December 31,
2003


United States

  91  106  166

Europe (other than the United Kingdom)

  23  22  20

United Kingdom

  43  50  58
   
  
  
   157  178  244
   
  
  

Properties

We own one facility in Glasgow, Scotland and consultants also sign agreements requiring that they assign to us their interestslease 14 facilities throughout the world under non-cancelable leases with various terms. The following table summarizes occupied locations. Annual rent amounts presented in patents and copyrights arising from their work for us. All employees sign an agreement not to compete unfairly with us during their employment and after termination of their employment, through the misuse of confidential information, soliciting employees, soliciting customers and the like. However, it is possible that these agreements may be breached or invalidated and if so, there may not be an adequate corrective remedy available. Despite the measures we have taken to protect our intellectual property, we cannot assure you that third parties will not independently discover or invent competing technologies, or reverse engineer our trade secrets or other technologies. Therefore, the measures wetable are taking to protect our proprietary rights may not be adequate. We do not believe that our products infringe on the intellectual property rights of any third party. However, third parties may file claims asserting that our technologies or products infringe on their intellectual property. We cannot predict whether third parties will assert claims against us or against the licensors of technology licensed to us, or whether those claims will be found to have merit. If we are forced to defend against such claims, whether they are with or without any merit, whether they are resolvedreflected in favor of or against us or our licensors, we may face costly litigation and diversion of management's attention and resources. thousands.

Location


  

Function


  Square
Footage


  Annual
Rent


  

Lease Term
Expires


Owned

             

Glasgow, Scotland

  Phosphoramidite Manufacturing  44,212   N/A  N/A

Leased and Occupied

             

Omaha, Nebraska

  WAVE® and Consumable Manufacturing  25,000  $130  June 2007

San Jose, California

  Consumable Manufacturing  14,360  $139  October 2010

Cramlington, England

  Consumable Manufacturing  8,500  $53  March 2006

Omaha, Nebraska

  Multi Functional(1)  18,265  $187  July 2007

Paris, France

  Multi Functional(1)  4,843  $109  January 2014

Gaithersburg, Maryland

  Multi Functional(1)  6,560  $114  May 2006

Cambridge, Massachusetts

  Multi Functional(1)  2,500  $70  January 2007

Leased and Not Occupied (2)

  Multi Functional(1)  55,759  $505  2005 – 2007

(1)Multi Functional facilities include functions related to manufacturing, services, sales and marketing, research and development and/or administration.

(2)Leased and not occupied facilities represent six facilities with gross annual rents of $0.82 million. A number of these facilities are sublet to independent third parties. Annual rents from these subtenants are expected to total $0.32 million in 2005. We are pursuing sublet tenants for remaining vacated space.

As a result of such disputes,restructuring initiatives initiated in 2004 and 2002, a significant amount of leased space is unoccupied. In certain cases, we may have sublet this space to develop costly non-infringing technology or enter into licensing agreements. These agreements, if necessary, may be unavailable on terms acceptablethird parties.

Legal Proceedings

We are subject to us, or at all, which could seriously harm our business or financial condition. COMPETITION The market for our products is highly competitive. Our principal competitors include those entities that provide alternative technologies and products for the separation and analysis of DNA in the areas 35 of sample amplification, analysis process, sample separation and mutation detection and correlation. They include Affymetrix, Inc., Agilent Technologies, Amersham Pharmacia Biotech AB, Bio-Rad Laboratories, Inc., BioWhittaker Molecular Applications, Caliper Technologies Corp., GeneTrace Systems, Inc., Invitrogen Corporation, PE Corporation, Sequenom, Inc. and Varian Associates Inc. Moreover, competitors have greater name recognition than we do and provide more conventional technologies and products with which some of our customers and potential customers may have more familiarity or experience. In many cases, in order to compete against existing and alternative technologies, we will need to demonstrate the superior performance, speed and capabilities of our WAVE System, including our proprietary DNASep column and micro-bead technology. We cannot assure you that we will be able to make the necessary enhancements to our technology or products to compete successfully with newly emerging technologies. EMPLOYEES As of December 31, 2000, we had 189 full-time employees. The following sets forth thea number of persons employed inclaims of various amounts, which arise out of the principal areasnormal course of business. In our operation: Manufacturing............................................... 32 Sales and Marketing......................................... 68 Research and Development.................................... 59 Administration.............................................. 30
Our future success dependsopinion, the disposition of pending claims will not have a material adverse effect on our continuing abilityfinancial position, results of operations or cash flows.

MANAGEMENT

Our executive officers are appointed annually by the Board of Directors at the first meeting following the annual stockholders’ meeting. Other officers are appointed by the Board of Directors from time to attract, traintime. Each officer holds office until a successor has been duly appointed and retain highly qualified technical, sales and managerial personnel. Competition for these personnel is intense. Due toor until the limited numberdeath, resignation or removal of people available with the necessary technical skills, we can give no assurance that we can retain or attract key personnel in the future. None of our employees is represented by a labor union. We have not experienced any work stoppages and consider our relations with our employees to be good. PROPERTIES We do not own any real property. We currently lease office and manufacturing space in the following locations:
LOCATION SQUARE FOOTAGE ANNUAL RENT LEASE TERM EXPIRES - -------- -------------- ----------------- ------------------ Omaha, Nebraska................................... 16,734 $172,000 2007 San Jose, California.............................. 27,860 $468,000 2005 Crewe, England.................................... 10,250 L97,500 2006 Cramlington, England.............................. 8,200 L26,000 2001 Tokyo, Japan...................................... 1,000 Y7,293,000 2001 Cambridge, Massachusetts.......................... 2,500 $54,000 2002 Gaithersburg, Maryland............................ 2,294 $35,000 2004 Houston, Texas.................................... 2,760 $24,000 2003 San Diego, California............................. 4,995 $135,000 2003
36 MANAGEMENT DIRECTORS AND EXECUTIVE OFFICERSsuch officer. Our executive officers and directors, positions held by them and their ages are as follows: listed below followed by a brief biography.

NAME AGE POSITION - ---- -------- --------

Name


Age

Position


Collin J. D'Silva......................... 43 D’Silva

48Chairman of the Board, Chief Executive Officer and Director William P. Rasmussen...................... 48

Michael A. Summers

41Chief Financial Officer Douglas T. Gjerde, Ph.D................... 47 Chief Scientific Officer and Director John E. Doyle............................. 57 Executive Vice President of Operations William Walker............................ 65 Vice President of Intellectual Property

Mitchell L. Murphy........................ 44 Murphy

49Vice President, Secretary and Treasurer Stephen F. Dwyer.......................... 58 Director Jeffrey Sklar, M.D., Ph.D................. 53 Director Parag Saxena.............................. 45 Director Gregory J. Duman.......................... 45 Director Roland J. Santoni......................... 59 Director
COLLIN

Collin J. D'SILVA. D’Silva.Mr. D'SilvaD’Silva has served as our Chairman of the Board and Chief Executive Officer since 1997 and is also a Director. Mr. D'Silva,D’Silva, a co-founder of Transgenomic, has worked for Transgenomicthe Company and its predecessors since 1988. Prior to that time, Mr. D'SilvaD’Silva was employed by AT&T from 1980.1980 to 1988. At AT&T, he held various positions in engineering, materials management, sales support and business development. His last position at AT&T was Business Unit Manager and Engineering Manager for a network distribution products division. Mr. D'SilvaD’Silva holds a B.S. degree and a M.Eng. degree in industrial engineering from Iowa State University and an M.B.A. from Creighton University. WILLIAM P. RASMUSSEN. Mr. Rasmussen

Michael A. Summers.Mr. Summers joined us on October 1, 1998Transgenomic, Inc. in August 2004 and currently serves as our Chief Financial Officer. PriorMr. Summers was employed with C&A Industries, Inc. from 2003 to joining us, Mr. Rasmussen2004 where as General Manager he was responsible for the operations of various divisions that provided human capital management and consulting services. From 2001 to 2003, he was Executive Vice President and Chief Financial Officer at I-Mark Systems from 1996 until itfor Nexterna, Inc., a wholly-owned technology subsidiary of the Union Pacific Corporation. From 2000 to 2001, he was purchased in 1997. I-Mark Systems designed integrated computer voting solutions and was a successor corporation of ADD Consulting Inc., which provided computer staffing professionals to numerous industries. Mr. Rasmussen served asthe Chief Financial Officer of ADD Consulting Inc. from 1994 until joining I-Mark Systems in 1996. Mr. Rasmussen owned a travel management company from 1986 until 1998, and he provided consulting services to numerous software and telecommunication companies from 1984 through 1994. Mr. Rasmussen's previous experience also includes serving as Controller and Principle Accounting Officer for Applied Communications, Inc. from 1979 until 1984. Applied Communications, Inc.Able Telcom Holding Corp., now known as Transaction Systems Architects, Inc., is a software provider for transaction processing systems. DOUGLAS T. GJERDE, PH.D. Dr. Gjerde joined us in 1996 as Chief Scientific Officer. Dr. Gjerde has held positions as senior scientist for Exxon Researchpublicly-owned project management and Engineering, Director of Research for Wescan Instruments, and President and Director of Research & Development for Sarasep, Inc. Sarasep, which Dr. Gjerde co-founded, was acquired by us in 1996. Dr. Gjerde has authored 12 patents and has more than 40 journal publications, primarily focused on separation technology. Dr. Gjerde received his B.S. in chemistry in 1976 from Minnesota State University, Mankato, Minnesota, and his Ph.D. in analytical chemistry in 1980 from Iowa State University, Ames, Iowa. JOHN E. DOYLE. Mr. Doyle has been with our company since September 1997, initially focusing on operations and process improvement. In 1999, Mr. Doyle assumed responsibility for sales, again focusing on process as well as improvements in staffing.construction company. Prior to joining Transgenomic, he was2000, Mr. Summers held various positions including eight years as an auditor for the Omaha, Nebraska office of Deloitte & Touche, LLP. Mr. Summers graduated from Creighton University in 1987 with Supelco Inc. for 20 years, serving as Chief Executive Officer when it was a Sigma-Aldrich company; Business Unit Vice President when it was a subsidiary of Rohm and Haas Corporation; and 37 International Vice President when it was privately held. Mr. Doyle received his engineering degree from Pennsylvania State University. WILLIAM WALKER. Mr. Walker joined us in 1998 as Vice President of Intellectual Property. Mr. Walker is a corporate attorney with an emphasis in intellectual property law. Mr. Walker served as Director of Patents and Licensing for Syntex Corporation (1970-1981) and subsequently provided intellectual property counseling to new and emerging companies. Mr. Walker has a law degree from Georgetown University Law Center, a B.S. degree in chemical engineering from the University of Tennessee and a MFCC degree in psychology from Santa Clara University.business administration with an accounting major. He is a member of the California Bar and is active in numerous professional organizations. MITCHELLCertified Public Accountant.

Mitchell L. MURPHY. Murphy.Mr. Murphy joined us in 1992. His current duties include the overall corporate administration and shareholder relations. Prior to joining Transgenomic, he held accounting and financial management positions for 15 years with companies involved in manufacturing, steel distribution and rebar fabrication for 15 years.fabrication. He spent over two years as an auditor for the Omaha, Nebraska office of Deloitte, Haskins & Sells (now Deloitte & Touche LLP) working in a broad range of industries. Mr. Murphy graduated with honors from Creighton University in 1978 with a B.S. degree in business administration with an accounting major. STEPHEN F. DWYER. Mr. Dwyer is the Chief Executive Officer

Board of SD Acquisition Inc., a company that acquired the assets associated with our non-life sciences instrument product line during the second quarterDirectors and Committees

Our entire Board of 2000. Mr. Dwyer is a director and was a co-founderDirectors consists of Transgenomic. From 1996 until March 2000, Mr. Dwyer was employed by Transgenomic and its predecessor company, most recently as Vice Chairman. In 1966, Mr. Dwyer started Sasco Inc.,seven positions of which produced laboratory animals used in disease research. In 1986, Mr. Dwyer sold Sasco to Charles River Labs. He continued to run Sasco as a Charles River Labs subsidiary for the next eight years. JEFFREY SKLAR, M.D., PH.D. Dr. Sklar is professor of Pathology at Harvard Medical School, where he has been on the faculty for more than five years. He also serves as Director of the Divisions of Diagnostic Molecular Biology and Molecular Oncology, department of Pathology Brigham and Women's Hospital. Dr. Sklar serves on the Editorial Boards of Numerous Journals in the area of Pathlogy and Cancer and on Scientific Advisory Committees to the Dana-Farber Cancer Center, Boston, MA; the Fred Hutchinson Cancer Center, Seattle, Washington; the New England Regional Primate Center; Harvard University; and the National Institutes of Health. He is a director of Dianon Systems, Inc., and has served on the scientific advisory boards of numerous companies in the biotechnology field. Dr. Sklar holds an M.D. and Ph.D. from Yale University and an M.A. (honorary) from Harvard University. PARAG SAXENA. Mr. Saxena is the Chief Executive Officer of INVESCO Private Capital, Inc. ("IPC") and has held that position for more than five years. As a founding member of IPC, Mr. Saxena has been involved in numerous private capital transactions and has served as a director on a number of venture-backed healthcare and telecommunications companies. Mr. Saxena began his career in 1978 as a product engineer at Becton Dickinson Corporation. He later joined Booz, Allen and Hamilton in the Technology Management Services Group where his responsibilities included market analysis, technology strategy, acquisition evaluation and business strategy formulation for several Fortune 100 corporations in the healthcare field. Mr. Saxena joined Citicorp Investment Management, Inc. in 1983 as a founding member of the private capital group's predecessor and was responsible for healthcare private investments and small cap public stocks. Mr. Saxena received a B. Tech in 1977 from the Indian Institute of Technology and an M.S. in 1978 in Chemical Engineering from West Virginia College of Graduate Studies. He earned an M.B.A. in 1982 from the Wharton School of the University of Pennsylvania. GREGORY J. DUMAN. Mr. Duman has been a director since March 2000. Mr. Duman is the Chief Financial Officer of Artios, Inc. (formerly ECOM Worldwide, Inc.), a transaction processing services company, which he joined in 2000. Prior to that, he was Executive Vice President of Transaction 38 Systems Architects, Inc. ("TSA"). He joined TSA in 1983 as Director of Administration. He became Controller in 1985 and Vice President and Chief Financial Officer in 1991, serving until February 2000. From 1979 to 1983, he worked for Arthur Andersen & Co. as a certified public accountant. Mr. Duman is a director of TSA and Digital Courier Technologies, Inc. ROLAND J. SANTONI. Mr. Santoni has been a director since March 2000. He has been Professor of Law at Creighton University School of Law, Omaha, Nebraska since 1977. He also has been Of Counsel with Erickson & Sederstrom, P.C. since 1978. Mr. Santoni received a B.S. in Economics fromsix are occupied. The Wharton School, University of Pennsylvania, in 1963 and a J.D., CUM LAUDE, from the University of Pennsylvania School of Law in 1966. SCIENTIFIC ADVISORS We consult with several leading scientists from around the world, as part of our ongoing research and development efforts. These advisors assist us in formulating our research, development, and commercialization strategies. Some of these advisors include: - Dennis R. Burton, Ph.D., Professor of Immunology, The Scripps Research Institute, La Jolla, California. - R. Alan North, Ph.D., Professor and Director of the Institute of Molecular Physiology, the University of Sheffield, Sheffield, U.K. - Eric Hoffman, Ph.D., Director, Research Center for Genetic Medicine, The Children's National Medical Center, Washington, D.C. - Leon Yengoyan, Ph.D., Professor of Chemistry, San Jose State University, San Jose, California. We do not pay cash remuneration to our scientific advisors, but may reimburse them for reasonable expenses they incur on our behalf. We may also award stock options to them under our stock option plan. See "Stock Option and Other Compensation Plans" below. BOARD OF DIRECTORS Our Board of Directors is comprised of seven directors and is divided into three classes. Directors ofclasses with directors in each class are electedserving for termsa term of three years. Class I directors are Parag Saxena and Collin J. D'Silva. Class II directors are Stephen F. Dwyer and Jeffrey Sklar. Class III directors are Douglas T. Gjerde, Gregory Duman and Roland J. Santoni. The current terms of office of the current Class I, Class II and Class III directors will endexpire in 2007, 2008 and 2006, respectively.

The following table sets forth information about our directors. The Board of Directors has determined that Messrs. Saxena, Sloma, Sklar and Santoni are independent directors of the Company under the listing standards adopted by the Nasdaq Stock Market. All directors have held the positions with the companies (or their predecessors) set forth under “Principal Occupation” for at least five years, unless otherwise indicated.

Name


  Age

  

Principal Occupation


  Director
Since


  Term To
Expire


Gregory T. Sloma  54  Executive Vice President and Chief Financial Officer of SpeedNet Services, Inc. (1)  2004  2008
Jeffrey L. Sklar, M.D., Ph.D.  57  Professor of Pathology, Yale University School of Medicine(2)  1997  2008
Gregory J. Duman  50  President of Prism Technologies LLC(3)  2000  2006
Roland J. Santoni  64  Vice President of West Development, Inc. (4)  2000  2006
Collin J. D’Silva  48  President and Chief Executive Officer of the Company(5)  1997  2007

Parag Saxena

  50  Chief Executive Officer of INVESCO Private Capital, Inc.  1999  2007

(1)Mr. Sloma is also a director of West Corporation. From 1996 to 2003, Mr. Sloma served in several capacities including President, Chief Operating Officer, Chief Executive Officer, and Vice Chairman and Director of Mergers & Acquisitions for DTN Corporation. In September 2003, DTN Corporation filed a pre-packaged Chapter 11 reorganization petition in bankruptcy. DTN Corporation emerged from bankruptcy on October 31, 2003.

(2)From 1989 to 2003, Dr. Sklar was Professor of Pathology, Harvard Medical School.

(3)From 2001 to 2003, Mr. Duman was Executive Vice President and Chief Financial Officer of the Company. From 2000 to 2001, Mr. Duman was Chief Financial Officer of Artios, Inc. From 1983 to 2000, Mr. Duman served in several capacities including Controller, Chief Financial Officer and Executive Vice President of Transaction Systems Architects, Inc.

(4)From 1977 to 2003, Mr. Santoni was Professor of Law at Creighton University. In addition, from 1978 to 2003, he served Of Counsel with the law firm of Erickson & Sederstrom, P.C.

(5)Mr. D’Silva is also a director of Bruker Biosciences Corporation, formerly known as Bruker Daltonics, Inc.

The Board of Directors has established and assigned certain responsibilities to an Audit Committee and a Compensation Committee. We do not have a standing nominating committee. The Board determined that due to the relatively small size of the Board, and due to the policy on director nominations, which is described below, it was not necessary to form a separate committee to evaluate director nominations. Under the director nomination policy, director candidates are identified primarily through suggestions made by directors, management and stockholders of the Company. We have implemented no material changes to the procedures by which stockholders may recommend nominees for the Board of Directors. The Board of Directors will consider director nominees recommended by stockholders that are submitted in writing to the Secretary of the Company in a timely manner and which provide necessary biographical and business experience information regarding the nominee. All candidates for director will be evaluated based on their independence, character, judgment, diversity of experience, financial or business acumen, ability to represent and act on behalf of all stockholders, and

the needs of the Board. In general, the Board expects to nominate incumbent directors who express an interest in continuing to serve on the Board. The independent directors of the Company review and consider all candidates to serve as a director of the Company who are properly suggested by directors, management and stockholders of the Company, and the Board of Directors selects its nominees to serve as a director of the Company from among those candidates who are recommended to the Board of Directors by a majority of the independent directors of the Company.

Audit Committee. The Audit Committee’s primary duties and responsibilities include monitoring the integrity of our financial statements, monitoring the independence and performance of our external auditors, and monitoring our compliance with applicable legal and regulatory requirements. The functions of the Audit Committee also include reviewing periodically with independent auditors the performance of the services for which they are engaged, including reviewing the scope of the annual stockholders meetings heldaudit and its results, reviewing with management and the auditors the adequacy of our internal accounting controls, reviewing with management and the auditors the financial results prior to the filing of quarterly and annual reports, and reviewing fees charged by our independent auditors. Our independent auditors report directly and are accountable solely to the Audit Committee. The Audit Committee has the sole authority to hire and fire the independent auditors and is responsible for the oversight of the performance of their duties, including ensuring the independence of the independent auditors. The Audit Committee also approves in 2001, 2002advance the retention of, and 2003, respectively. BOARD COMMITTEESall fees to be paid to, the independent auditors. The auditrendering of any auditing services and all non-auditing services by the independent auditors is subject to the approval in advance of the Audit Committee. The Audit Committee operates under a written charter which is available on our website at www.transgenomic.com. The Audit Committee is required to be composed of directors who are independent of the Company under the rules of the Securities and Exchange Commission and under the listing standards of the Nasdaq Stock Market. The current members of the Audit Committee are directors Santoni, Saxena and Sloma. The Board of Directors has determined that Mr. Sloma qualifies as an “audit committee financial expert” under the rules of the Securities and Exchange Commission.

Compensation Committee.The Compensation Committee reviews and approves our compensation policy, changes in salary levels and bonus payments to our executive officers and other management and determines the timing and terms of awards made pursuant to our stock option plan. The Compensation Committee consists of Messrs. Duman,directors Sklar, Santoni and Saxena, each of whom is an independent director. The audit committee reviews the services providedhas been determined by our independent auditors, consults with the auditors on audits and proposed audits, and reviews and evaluates our control functions. The compensation committee consists of Messrs. Sklar, Dwyer and Saxena. The compensation committee reviews the compensation arrangements for our executive officers, makes recommendations to the Board of Directors regarding compensation matters and administers our employee stock option plan. See "Stock Option and Other to be independent under the listing standards of the Nasdaq Stock Market.

Compensation Plans" below. DIRECTOR COMPENSATION of Directors

Directors who are also our officers or affiliates are not separately compensated for serving on the Board of Directors other than reimbursement for out-of-pocket expenses related to attendance at board and committee meetings. Non-employeeIndependent directors are paid an annual retainer of $12,000. In addition, they receive a fee of $1,200 for attending meetings in person, or $600 for participating in a meeting by teleconference, as well as reimbursement for out-of-pocket expenses related to attendance at board and committee meetings. 39 Independent directors serving on any committee of the Board of Directors are paid an additional annual retainer of $2,500, except that the additional retainer paid to independent directors serving on the Audit Committee is $5,000.

Our non-employee and non-affiliated directors are issued options to purchase 15,000 shares of common stock under our 1997 Stock Option Planstock option plan upon initial appointment to the board. TheseBoard. For options granted prior to March 28, 2003, such options vest at the rate of 20% per year of service on the board.Board. Additional grants will bewere made from time to time so that each non-employee director holdswould hold 15,000 unvested options at any time. Effective March 28, 2003, the options granted to a non-employee and non-affiliated director upon

initial appointment to the Board vest at the rate of 33 1/3% per year of service on the Board. Additional grants of options to purchase 5,000 shares of common stock will be made on a date reasonably close to each anniversary of such director’s appointment to the Board to be determined by the Compensation Committee in its sole discretion, with such options vesting on the third anniversary of the grant. All options granted to non-employee directors have exercise prices that represented or exceeded the fair market value of our stock on the grant date. Exercise prices on outstanding options granted to our non-employee directors range from $5.00$2.37 to $13.00 per share. COMPENSATION COMMITTEE INTERLOCKS AND INSIDER PARTICIPATION No member of our

Compensation Committee Interlocks and Insider Participation

There are no Compensation Committee interlocks and no insider participation in compensation committee serves as a memberdecisions that are required to be reported under the rules and regulations of the boardSecurities Exchange Act of directors or compensation committee1934.

Compensation of any other company that has one or more executive officers serving as a member of our board of directors or compensation committee. EXECUTIVE COMPENSATION Executive Officers

The following table sets forth information regarding the totalannual and long-term compensation we paid during the year ended December 31, 1999by us to our Chief Executive Officer, and our next four most highly compensatedtwo other executive officers whose salary and bonusthree former executive officers for 1999 exceeded $100,000. Also included isservices rendered during the compensationthree years ended December 31, 2004.

SUMMARY COMPENSATION TABLE

Annual Compensation

Long-Term Compensation

Awards

Payouts

(a)

Name and Principal Position


(b)

Year


(c)

Salary

($)


(d)

Bonus

($)


(e)

Other Annual

Compensation(1)

($)


(f)

Restricted

Stock

Award(s)

($)


(g)

Securities

Underlying

Options/

SARs

(#)


(h)

LTIP

Payouts(2)

($)


(i)

All Other

Compensation(3)

($)


Collin J. D’Silva

President and Chief

Executive Officer

2004
2003
2002
140,568
142,308
200,000
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
15,311
5,927
6,113

Michael A. Summers(4)

Chief Financial

Officer

2004
2003
2002
54,578
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
1,135
—  
—  

Mitchell L. Murphy

Vice President,

Secretary and Treasurer

2004
2003
2002
135,544
120,000
100,538
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
50,000
—  
—  
—  
—  
14,468
5,986
8,412

Keith A. Johnson(5)

Former Vice President,

General Counsel

2004
2003
2002
135,392
135,000
112,673
—  
—  
—  
—  
—  
—  
—  
—  
—  
25,000
65,000
35,000
—  
—  
—  
10,890
4,776
35,036

John L. Allbery(6)

Former Executive Vice

President

2004
2003
2002
129,693
200,000
200,000
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
50,000
—  
—  
—  
—  
3,893
6,444
17,473

Michael J. Draper(7)

Former Chief Financial

Officer

2004
2003
2002
59,928
122,731
102,951
—  
—  
—  
—  
—  
—  
—  
—  
—  
—  
75,000
7,500
—  
—  
—  
938
6,873
5,481

(1)No disclosure is required in this column pursuant to applicable Securities and Exchange Commission regulations, as the aggregate value of items covered by this column does not exceed the lesser of $50,000 or 10% of the annual salary and bonus shown for each respective executive officer named.

(2)We do not have a long-term incentive plan as defined in Item 402 of Regulation S-K under the Securities Exchange Act of 1934, as amended.

(3)These amounts consist of accrued vacation to be taken in the future or paid in cash upon termination of employment, 401(k) Company matching contributions, reimbursed moving expenses and auto allowances, as applicable.

(4)Mr. Summers joined the Company and assumed the role of Chief Financial Officer on July 31, 2004.

(5)Mr. Johnson was appointed Vice President, General Counsel by the Board of Directors effective April 4, 2002 and resigned effective May 1, 2005.

(6)Mr. Allbery was appointed Executive Vice President by the Board of Directors effective May 23, 2001. He resigned from the Company on July 23, 2004.

(7)Mr. Draper resigned as Chief Financial Officer effective March 31, 2004.

Options/SAR Grants in Last Fiscal Year

The Compensation Committee may grant either qualified or non-qualified stock options to the officers and employees of anthe Company and nonqualified stock options to nonemployee directors and advisors under our stock option plan. The following table shows the options granted during 2004 to a former executive officer who resigned priorof the Company whose compensation is reported in the Summary Compensation Table.

   

(b)

Number of

Securities

Underlying

Options/SARs

Granted

(#)(1)


  

(c)

%

of Total

Options/SARs

Granted to

Employees in

Fiscal Year


  

(d)

Exercise or

Base Price

($/Sh)


  

(e)

Expiration

Date


  Potential Realized Value
at Assumed Annual
Rates of Stock Price
Appreciation for Option
Term(2)


(a)

Name


         

(f)

5%($)


  

(g)

10%($)


Keith A. Johnson

  25,000  6.9% $1.32  5/21/2014  $21,000  $53,000

(1)The exercise price of all options granted to executive officers during fiscal 2004 is equal to the fair market value of our common stock on the date of grant. Each option expires ten years from the date of grant. No stock appreciation rights (SARs) may be granted under our stock option plan.

(2)The dollar amounts set forth under these columns are the result of calculations of assumed appreciation in the price of our common stock at these annual rates from the respective dates of the grant to the respective expiration dates of the options. These assumptions are not intended to forecast future price appreciation of our common stock. The market price of our common stock may increase or decrease in value over the time period set forth above.

Aggregated Option/SAR Exercises in Last Fiscal Year and FY-End Option/SAR Values

The following table sets forth certain information concerning the number of exercised and unexercised options and the value of such options at the end of 2004 held by the year. These executive officers are referred to as the namedand three former executive officers elsewhereof the Company whose compensation is reported in the prospectus. SUMMARY COMPENSATION TABLE(1) Summary Compensation Table.

ANNUAL COMPENSATION ---------------------------------- OTHER ANNUAL ALL OTHER NAME AND PRINCIPAL POSITION SALARY BONUS COMPENSATION COMPENSATION(2) - --------------------------- -------- -------- ------------ ---------------

(a)

Name


(b)

Shares Acquired

on Exercise(#)


(c)

Value Realized

($)(1)


(d)

Number of

Securities

Underlying

Unexercised

Options/SARs at

Year End(#)

Exercisable/

Unexercisable


(e)

Value of

Unexercised

In-the-Money

Options/SARs at

YearEnd($)(1)

Exercisable/

Unexercisable


Collin J. D'Silva.................................. $132,440 $ D’Silva

—  —  $6,129 $21,587 Chief Executive Officer William Walker..................................... 201,466/ 0 1,889 5,631 Vice President$0 / $0

Michael A. Summers

—  —  0 / 0$0 / $0

Mitchell L. Murphy

—  —  146,000 / 4,000$0 / $0

Keith A. Johnson

—  —  72,917 / 87,083$0 / $0

John L. Allbery

—  —  0 / 0$0 / $0

Michael J. Draper

—  —  61,253 / 0$0 / $0

(1)Based on the difference between the closing sale price of Intellectual Property John E. Doyle...................................... 150,645 4,000 3,615 17,893 Executive Vice President of Operations Andrew T. Zander, Ph.D............................. 117,378 0 2,101 4,695 Vice President of Researchthe Common Stock on the exercise date or December 31, 2004 and Development(3) Douglas T. Gjerde, Ph.D............................ 101,216 0 3,074 19,394 Chief Scientific Officer P. Thomas Pogge.................................... 162,871 0 4,643 8,256 General Counsel(4) the related option exercise price.
- ------------------------ (1) No long term

Equity Compensation Plan Information

The following equity compensation was awardedplan information summarizes plans and securities approved and not approved by security holders as of December 31, 2004:

Plan category


  

(a)

Number of securities
to be issued upon
exercise of
outstanding options,
warrants and rights


  

(b)

Weighted-average
exercise price of
outstanding options,
warrants and rights


  

(c)

Number of securities
remaining available for
future issuance under
equity compensation plans
(excluding securities
reflected in column (a))


Equity compensation plans approved by security holders

  5,088,037  $5.09  867,727

Equity compensation plans not approved by security holders

  —     —    —  
   
  

  

Total

  5,088,037  $5.09  867,727
   
  

  

Long-Term Incentive Plans and Other Matters

We do not maintain a long-term incentive plan or paid topension plan (as defined in Item 402 of SEC Regulation S-K) for our executive officers and have not repriced any namedoptions or SARs for any executive officer during 1999. (2) Consists of accrued vacation to be taken in the future or paid in cash upon termination of employment. (3) Dr. Zander resigned as an executive officer on March 24, 2000. (4) Mr. Pogge resigned as an executive officer prior to the end of 1999. All executive officers are eligible to participate in our stock option plan (described under "Stocklast fiscal year.

Stock Option and Other Compensation Plans")Plans

Stock Option Plan.Our Fourth Amended and may participate in other employee benefit plans and programs, such as health insurance plans, that we offer to our other employees. 40 OPTION GRANTS IN LAST FISCAL YEAR None of the named executive officers were awarded any stock options during 1999. AGGREGATED OPTION EXERCISE IN LAST FISCAL YEAR AND YEAR-END OPTION VALUES None of the named executive officers exercised any stock options during 1999. STOCK OPTION AND OTHER COMPENSATION PLANS STOCK OPTION PLAN. Our stock option planRestated 1997 Stock Option Plan allows us to grant options to our employees, directors and advisors, which givegives them the right to buy our common stock at a fixed price, even if the market value of our stock goes up. Our stock option plan is administered by the compensation committeeThe Compensation Committee of our Board of Directors administers our stock option plan and it has the sole authority to set the number, exercise price, term and vesting provisions of the options granted under the plan.plan, except that any award made to a director serving on the Compensation Committee must be ratified by a majority of the entire Board of Directors. Under the terms of the plan, the exercise price of an incentive stock option, as defined under the Internal Revenue Code of 1986, as amended, cannot be less than the fair market value of our common stock on the date the option is granted. In general, options will expire if not exercised within ten years from the date they are granted. The committeeCompensation Committee may also require that an option holder remain employed by us for a specified period of time before an option may be exercised. These "vesting"The committee establishes these “vesting” provisions are established on an individual basis by the committee.basis. The committeeCompensation Committee will also decide whether options will be nonqualified options or structured to be qualified options for U.S. income tax purposes. Either incentive or nonqualified stock options may be granted to employees, but only nonqualified stock options may be granted to our non-employee directors and advisors. Options for a maximum of 6,000,0007,000,000 shares may be granted under the plan. As of the date of this prospectus, we have outstandingOutstanding options for 4,034,881a total of 5,541,015 shares of our common stock. Thesestock are outstanding at the Record Date, of which 4,396,281 may be exercised at this time. Outstanding options have exercise prices ranging from $5.00$1.00 to $13.00 per share.

Under the terms of our stock option plan, any options not vested will become immediately vested if the option holder dies, becomes permanently disabled or retires any options not vested at such time will become immediately vested.retires. If an option holder voluntarily resigns, any options not vested as of the date of resignation will terminate and all rights will cease, unlessas determined by the compensation committee determines otherwise.Compensation Committee and documented in the option grant documents. In the event an option holder'sholder’s employment, board membership or status as an advisor is terminated for cause, the option holder'sholder’s right to exercise an option, whether or not vested, will immediately terminate and all rights will cease, unless the compensation committeeCompensation Committee determines otherwise. EMPLOYEE SAVINGS PLAN.

Employee Savings Plan. We have also established an employee savings plan that is intended to qualify as a tax-qualified plan under Section 401(k) of the Internal Revenue Code. This plan allows for voluntary contributions up to statutory maximums by eligible employees. We match a specific proportion of these contributions, subject to limitations imposed by law. We may make additional contributions to the savings plan on behalf of our employees if our Board of Directors decides to do so. During theeach of three years ended December 31, 1997, 1998 and 1999,2004, we contributed $92,733, $117,923 and $174,973approximately $0.5 million to the savings plan on behalf of our employees. LIMITATION OF DIRECTORS AND OFFICERS LIABILITY

Employee Stock Purchase Plan. Our certificate of incorporation provides that no director will be liable for monetary damages for breachSecond Amended and Restated 2001 Employee Stock Purchase Plan (the “Stock Purchase Plan”) has been structured to qualify as an “employee stock purchase plan” under Section 423 of the director's fiduciary duty toInternal Revenue Code of 1986, as amended. Additionally, the company or its stockholders, except for liability arising from: - breachStock Purchase Plan authorizes the Compensation Committee of the director's dutyBoard of loyaltyDirectors to adopt sub-plans designed to achieve desired tax and other objectives in locations outside the company or its stockholders; - acts or omissions not in good faith or involving intentional misconduct or knowing violations of law; - improper distributionsUnited States. Up to stockholders and improper redemptions of stock; and - transactions from which the director derived an improper personal benefit. 41 This provision500,000 shares of our certificatecommon stock may be issued during the term of incorporation does not eliminate the directors' fiduciary duties, andStock Purchase Plan that is defined as December 1, 2001 through November 30, 2006. Employees are able to voluntarily participate in appropriate circumstances, equitable remedies includingthe Stock Purchase Plan through payroll deductions. Such deductions accumulate during the participation

periods, defined as three month periods. On the first business day of each participation period, each participant is deemed to have been granted an injunction or other forms of non-monetary relief would remain available under Delaware law. This provision also does not affect a director's responsibilities under any other laws including federal securities laws or state or federal environmental laws. In addition, our bylaws provide that we will indemnify our directors and officers to the fullest extent permitted by Delaware law. We are also empowered under our bylaws to enter into indemnification contracts with our directors and officers andoption to purchase insurancecommon stock at 85% of its fair market value as measured by the closing price of the stock on behalfeither the first or last business day of any person we are required or permitted to indemnify. We have obtained directors and officers liability insurance coverage which covers, among other things, liabilities arising under the Securities Act. EMPLOYMENT AGREEMENTS participation period, whichever is lower. The number of shares purchased is based upon the participant’s elected withholding amount. At the end of each participation period such option is automatically exercised.

Employment Agreements

We have entered into employment agreements with our Chief Executive Officer, Collin J. D'Silva,D’Silva and our Chief Financial Officer, William P. Rasmussen, our Chief Scientific Officer, Douglas T. Gjerde Ph.D. and our Vice-President of Intellectual Property, William R. Walker.Michael A. Summers. The employment agreements with Messrs. D’Silva and Summers require ourthese executives to devote their full time to our business activities, provided that they may serve as directors of or consultants to other companies that do not compete with us and for nonprofit corporations, civic organizations, professional groups and similar entities. OurThese executives are not allowed to compete with us during the term of their employment and for aone year after they are no longer our employee. Each agreement contains provisions under which ourthese executive officers have agreed to maintain the confidentiality of information concerning us and which prohibits them from disclosing confidential information about our business to people outside of the companyCompany, except for proper business purposes. Each of the

The employment agreementsagreement with Mr. D'Silva and Dr. GjerdeD’Silva has a term of 22 months expiring December 2006. The employment agreement with Mr. Summers has an initial term of fourthree years andexpiring July 2007. Each of these agreements may be extended unless we or Mr. D'Silva or Dr. Gjerde,the employee, as the case may be, give notice of an intention not to renew. The employment agreement with Mr. Walker has an initial term of two years and will automatically renew for an additional two-year period unless Mr. Walker or we give notice of an intention not to renew. The employment agreement with Mr. Rasmussen has an initial term of one year. If one of ourthese officers is terminated for reasons other than an act of serious misconduct, the officer will be entitled to severance pay in an amount equal to his then current base salary for an amount equal to twelve months' salary, except for Mr. Walker who will be entitled to severance pay in an amount equal to his then current base salary plusannual salary.

PRINCIPAL AND SELLING STOCKHOLDERS

Principal Shareholders

This table shows the amount of the previous year's bonus, provided that such severance payment does not exceed 299% of his current salary. In addition, if Mr. Walker dies or becomes permanently disabled, he will receive an amount equal to six months of salary. 42 PRINCIPAL STOCKHOLDERS The following table provides information as of December 31, 2000, concerning beneficial ownership of our common stock by: - each ofby our directors, for our current executive officers who are named executive officers; - each of our directors; -in the Summary Compensation Table, by all of our directors andcurrent executive officers and directors as a group;group, and -by each stockholder thatperson we knowbelieve beneficially owns more than 5% of our outstanding common stock. Basedstock on information furnished by such owners, we believe thator about the beneficial owners listed below havedate of this Prospectus. Each stockholder named in this table has sole voting and investment power over the shares he beneficially owns and all such shares are owned directly by the stockholder unless otherwise indicated. Stock ownership information of persons other than our executive officers and directors is based on available information, including but not limited to, Schedules 13D, 13F or 13G filed with respect to such shares. the Securities and Exchange Commission.

Name


  Number of Shares
Beneficially Owned


  Percent
of Class (1)


 

Directors and Executive Officers

       

Collin J. D’Silva, Director, President and Chief Executive Officer

  4,739,488(2) 9.6%

Michael A. Summers, Chief Financial Officer

  116,667(3) * 

Mitchell L. Murphy, Vice President, Secretary and Treasurer

  168,667(4) * 

Gregory J. Duman, Director

  240,400(5) * 

Jeffrey L. Sklar, M.D., Ph.D., Director

  24,000(6) * 

Roland J. Santoni, Director

  25,000(7) * 

Parag Saxena, Director

  0(8) * 

Gregory T. Sloma, Director

  10,000(9) * 

All directors and executive officers as a group (8 persons)

  5,324,222(10) 10.8%

Other Stockholders/Beneficial Owners

       

Kopp Investment Advisors, Inc.

  9,595,430(11) 19.5%

David M. Knott

  5,024,867(12) 9.9%

Mazama Capital Management, LLC

  3,792,948(13) 7.7%

LB I Group Inc.

  3,960,396(14) 8.1%

Michael A. Roth and Brian J. Stark

  2,722,772(15) 5.5%

Perceptive Life Sciences Master Fund, Ltd.

  2,772,277(16) 5.6%

NUMBER OF SHARES PERCENT NAME BENEFICIALLY OWNED BENEFICIALLY OWNED - ---- ------------------ ------------------ EXECUTIVE OFFICERS AND DIRECTORS
*Represents less than 1% of the outstanding Common Stock of the Company.

(1)Applicable percentage ownership is based on 49,172,079 shares of common stock outstanding as of November 29, 2005, together with securities presently exercisable or convertible into shares of common stock and securities that the holder, as of November 29, 2005, had the right to exercise or convert into shares of common stock within sixty (60) days. Securities that are exercisable or convertible as described above are deemed to be outstanding and beneficially owned by the person holding such securities for the purpose of computing the percentage of ownership of such person, but are not treated as outstanding for the purpose of computing the percentage ownership of any other person.

(2)Consists of 2,771,538 shares owned by Mr. D’Silva, 1,400,000 shares owned by the Arthur P. D’Silva Trust, of which Collin J. D'Silva(1)................................. 4,906,154 23.1% William P. Rasmussen(2).............................. 85,000 * Douglas T. Gjerde, Ph.D.D’Silva is the sole trustee, 484,616 shares owned by D’Silva, LLC, of which Mr. D’Silva is the managing member and vested options to purchase 83,334 shares at $1.03 per share. Mr. D’Silva also holds unvested options to purchase an additional 166,666 shares at $1.03 per share.

(3).......................... 2,500,000 11.0 John E. Doyle(4)..................................... 45,000 * William Walker(5)....................................Consists of vested options to purchase 66,667 shares at $1.09 per share and 50,000 * Mitchell L. Murphy(6)................................ 24,000 * Stephen F. Dwyer(7).................................. 2,724,096 12.8 Jeffreyshares at $1.03 per share. Mr. Summers also holds unvested options to purchase an additional 33,333 shares at $1.09 per share and 100,000 shares at $1.03 per share.

(4)Consists of 4,000 shares owned by Mr. Murphy and vested options to purchase 50,000 shares at $5.00 per share, 10,000 shares at $11.94 per share, 2,500 shares at $9.91 per share, 8,000 shares at $6.38 per share, 27,500 shares at $6.24 per share, 50,000 shares at $1.92 per share and 16,667 shares at $1.03 per share. Mr. Murphy also holds unvested options to purchase an additional 2,000 shares at $6.38 per share and 33,333 shares at $1.03 per share.

(5)Consists of 25,400 shares owned by Mr. Duman and vested options to purchase 15,000 shares at $10.00 per share and 200,000 shares at $6.00 per share. Mr. Duman also holds unvested options to purchase an additional 5,000 shares at $2.57 per share.

(6)Consists of vested options to purchase 15,000 shares at $5.00 per share and 9,000 shares at $13.00 per share. Dr. Sklar M.D., Ph.D.(8)........................ 9,000 * Gregory Duman(9)..................................... 25,400 * Roland J. Santoni(10)................................ 4,300 * Parag Saxena......................................... -- * All executive officersalso holds unvested options to purchase an additional 3,000 shares at $6.38 per share, 6,000 shares at $6.16 per share, 5,000 shares at $2.57 per share and directors as5,000 shares at $1.09 per share.

(7)Consists of 2,500 shares owned by Mr. Santoni and vested options to purchase 17,500 shares at $10.00 per share and 5,000 shares at $2.57 per share. Mr. Santoni also holds unvested options to purchase an additional 3,000 shares at $6.16 per share, 3,000 shares at $6.00 per share and 5,000 shares at $2.57 per share.

(8)Mr. Saxena holds unvested options to purchase 15,000 shares at $1.09 per share.

(9)Consists of vested options to purchase 10,000 shares at $2.57 per share. Mr. Sloma also holds unvested options to purchase an additional 5,000 shares at $2.57 per share.

(10)Includes vested options to acquire 636,168 shares of common stock.

(11)The address of Kopp Investment Advisors, Inc. is 7701 France Avenue South, Suite 500, Edina, Minnesota 55435.

(12)Consists of 3,960,396 shares of common stock held in the names of Knott Partners, L.P.; Matterhorn Offshore Fund Ltd; Common Fund Hedged Equity Company; Shoshone Partners, L.P.; Anno, L.P.; and Good Steward Trading Company (collectively, the “Knott Companies”) and warrants to purchase an additional 1,064,471 shares at $1.20 per share. These shares are beneficially owned by David M. Knott and Dorset Management Corporation. The address of David M. Knott and Dorset Management Group is 485 Underhill Boulevard, Suite 205, Syosset, New York 11791. In addition to the foregoing shares and warrants, the Knott Companies hold warrants to purchase an additional 519,687 shares at $1.20 per share. These warrants are subject to a group (11 persons)....................................... 10,372,950 45.3 OTHER STOCKHOLDERS Arthur P. D'Silva(11)................................ 1,093,846 5.2 INVESCO Privateconversion cap which precludes the holder thereof from exercising such warrants to the extent that such owner would beneficially own in excess of 9.9% of the Company’s common stock.

(13)The address of Mazama Capital Management, LLC is One Southwest Columbia Street, Suite 1500, Portland Oregon 97258.

(14)Consists of 3,960,396 shares of common stock held in the name of LB I Group Inc.(12).................... 2,292,426 10.8 Lehman Brothers Holdings Inc. beneficially owns these shares along with Lehman Brothers Inc. and LB I Group Inc. The address of each of these beneficial owners is 745 Seventh Avenue, New York, New York 10019. In addition to these shares, LB I Group Inc. holds warrants to purchase an additional 1,584,158 shares at $1.20 per share. These warrants are subject to a conversion cap which precludes the holder thereof from exercising such warrants to the extent that such owner would beneficially own in excess of 4.9% and 9.9% of the Company’s common stock.
- ------------------------ * Less than 1%. (1) Includes 1,400,000

(15)Consists of 2,722,772 shares of common stock held in the name of SF Capital Partners Ltd. The named individuals are the managing members of Stark Offshore Management, LLC, which is the investment manager of SF Capital Partners Ltd. and has sole voting and dispositive power over the shares. The named individuals have disclaimed beneficial ownership of the shares. The address for the named individuals is 3600 South Lake Drive, St. Francis, Wisconsin 53235. In addition to these shares, SF Capital Partners Ltd. holds warrants to purchase an additional 1,089,109 shares at $1.20 per share. These warrants are subject to a conversion cap which precludes the holder thereof from exercising such warrants to the extent that such owner would beneficially own in excess of 4.9% and 9.9% of the Company’s common stock.

(16)Consists of 1,980,198 shares owned by Perceptive Life Sciences Master Fund, Ltd. and warrants to purchase an additional 792,079 shares at $1.20 per share. The warrants are subject to a conversion cap which precludes the holder thereof from exercising such warrants to the extent that such owner would beneficially own in excess of 9.9% of the Company’s common stock. The address of Perceptive Life Sciences Master Fund, Ltd. is c/o Perceptive Advisors, 7284 W. Palmetto Park Road, Suite 306, Boca Raton, Florida 33433.

Selling Stockholders

The shares offered by this Prospectus may be sold from time to time by the Arthur P. D'Silva Trust, of which Collin J. D'Silva is the sole trustee and 484,616 shares owned by D'Silva, LLC of which Mr. D'Silva is the managing member. (2) Includes vested options to purchase 40,000 shares at $5.00 per share and 25,000 shares at $13.00 per share. Mr. Rasmussen holds unvested options to purchase an additional 10,000 shares at $5.00 per share and 25,000 shares at $13.00 per share. (3) Includes an option to purchase 1,500,000 shares at $5.00 per share. (4) Consists of vested options to acquire 45,000 shares at $5.00 per share. Mr. Doyle holds unvested options to purchase an additional 30,000 shares at $5.00 per share. (5) Consists of vested options to purchase 50,000 shares at $5.00 per share. Mr. Walker holds unvested options to purchase an additional 50,000 shares at $5.00 per share. (6) Consists of 4,000 shares owned by Mr. Murphy and vested options to purchase 20,000 shares at $5.00 per share. Mr. Murphy holds unvested options to purchase an additional 30,000 shares at $5.00 per share and 10,000 at $11.94 per share. 43 (7) Includes 500,000 shares owned by Nancy A. Dwyer, Mr. Dwyer's wife. (8) Consists of vested options to acquire 9,000 shares of common stock at $5.00 per share. Dr. Sklar also holds unvested options to purchase 6,000 shares at $5.00 per share and 9,000 shares at $13.00 per share. (9) Consists of 25,400 shares owned by Mr. Duman. Mr. Duman holds unvested options to purchase an additional 15,000 shares at $10.00 per share. (10) Consists of 1,800 shares owned by Mr. Santoni and vested options to purchase 2,500 shares of common stock at $10.00 per share. Mr. Santoni holds unvested options to purchase 15,000 shares at $10.00 per share. (11) Includes 783,000 shares owned by the Cecilia F. D'Silva Residuary Trust, of which Arthur P. D'Silva is co-trustee. Mr. D'Silva is the father of Collin J. D'Silva. Mr. D'Silva's address is Transgenomic, Inc., 12325 Emmet, Omaha, Nebraska 68164. (12) These shares are held by entities affiliated with INVESCO Private Capital, Inc. which disclaims beneficial ownership of such shares. The address of INVESCO Private Capital, Inc. is 1166 Avenue of the Americas, New York, New York 10036. These affiliated entities are each selling stockholders that may sell shares of our common stock under this prospectus. 44 SELLING STOCKHOLDERSnamed in the following table. The following table shows the number of shares beneficially owned by each of thethese selling stockholders which includes shares which mayare offering under this Prospectus will be issued upon the exercise of warrants. This prospectus also relatesadjusted to reflect any additional shares of common stock which may become issuable to the selling stockholders by reason of any stock dividend, stock split recapitalization or other similar transaction effected without the receipt of consideration and which results in an increase in the number of our outstanding shares of common stock. stock or which otherwise increases the number of shares issuable upon conversion of the loan proceeds or upon the exercise of the warrants under which such shares may by issued.

The following table also sets forth the total number of shares offeredof our common stock beneficially owned by this prospectus may be offered from time to time byeach of the selling stockholders. Nostockholders and the percentage of our total outstanding shares of common stock that each selling stockholder holds any position or office with Transgenomic or has any other material relationship with us. Mr. G. S. Beckwith Gilbert was a director of Transgenomic from December 1997 to November 1998.beneficially owns. Percentage ownership is based on the 21,205,566 shares of our common stock outstanding as ofon or about the date of this prospectus. For purposes of computingProspectus plus the percentage of outstanding shares held by each person or group of persons named below, any security which such person or group of persons has the right to acquire within 60 days is deemed to be outstanding for the purpose of computing the percentage ownership for such person or persons, but is not deemed to be outstanding for the purpose of computing the percentage ownership of any other person. Any estimate that we give regarding the number of shares that willmay be held byissued to certain of the selling stockholders and which may be sold under this Prospectus. The estimate of shares owned after completion of this offering assumes that all shares offered by the Prospectus are sold. These estimates may prove to be inaccurate because the selling stockholders may offer all or some of their shares and because there currently are no agreements, arrangements or understandings with respect to the sale of any of the shares.

   Shares Beneficially Owned
Prior to the Offering


     Shares Beneficially Owned
After the Offering


 

Name


  Number

  Percentage(1)

  Shares
to be Sold


  Number

  Percentage

 

Laurus Master Fund, Ltd.(2)

  1,075,000  2.1% 1,075,000  0  * 

TN Capital Equities, Ltd.(3)

  61,484  *  61,484  0  * 

Kopp Emerging Growth Fund(4)

  9,595,430  19.5% 2,050,000  7,545,430  15.3%

Oppenheimer & Co. Inc.(5)

  932,859  1.9% 932,859  0  * 

LB I Group Inc.(6)

  3,960,396  8.1% 5,544,554  0  * 

Knott Partners, L.P.(7), (8)

  1,990,800  4.0% 1,990,800  0  * 

Matterhorn Offshore Fund Ltd.(7), (9)

  2,181,754  4.4% 2,181,754  0  * 

Common Fund Hedged Equity Company(7),(10)

  249,200  *  249,200  0  * 

Shoshone Partners, L.P.(7), (11)

  989,800  2.0% 989,800  0  * 

Anno, L.P.(7), (12)

  62,300  *  62,300  0  * 

Good Steward Trading Company(7), (13)

  70,700  *  70,700  0  * 

SF Capital Partners Ltd.(14)

  2,722,772  5.5% 3,811,881  0  * 

Perceptive Life Sciences Master Fund, Ltd.(15)

  2,772,277  5.6% 2,772,277  0  * 

Iroquois Master Fund Ltd.(16)

  1,732,674  3.5% 1,732,674  0  * 

Saffron Capital Int’l Fund Ltd.(17)

  693,070  1.4% 693,070  0  * 

RAQ, LLC(18)

  346,535  *  346,535  0  * 

Omicron Master Trust(19)

  346,535  *  346,535  0  * 

Endeavor Asset Management, L.P.(20)

  103,960  *  103,960  0  * 

SHARES BENEFICIALLY SHARES BENEFICIALLY OWNED PRIOR TO OWNED AFTER THE OFFERING THE OFFERING ------------------------- SHARES TO BE ---------------------- NAME NUMBER PERCENTAGE SOLD NUMBER PERCENTAGE - ---- ------------ ---------- ------------ --------- ---------- American Frontier Financial Corporation.................. 10,671
* 10,671 0 * Millennium Financial Group..... 500 * 500 0 * Consolidatedless than 1%

(1)Applicable percentage ownership is based on 49,172,079 shares of common stock outstanding as of November 29, 2005, together with securities presently exercisable or convertible into shares of common stock and securities that the holder, as of November 29, 2005, had the right to exercise or convert into shares of common stock within sixty (60) days. Securities that are exercisable or convertible as described above are deemed to be outstanding and beneficially owned by the person holding such securities for the purpose of computing the percentage of ownership of such person, but are not treated as outstanding for the purpose of computing the percentage ownership of any other person.

(2)Shares to be sold consist 1,075,000 shares issuable upon the exercise of warrants. The warrants are subject to a conversion cap which precludes the holder thereof from exercising such warrants to the extent that such owner would beneficially own in excess of 4.99% of the Company’s common stock. However, Laurus may elect to waive the 4.99% limitation with 75 days notice.

(3)All shares to be sold and beneficially owned represent shares issuable upon the exercise of warrants. TN Capital Equities, Ltd. (“TerraNova”) served as broker for the agreements entered into between the Company and Laurus. Warrants were issued to TerraNova as partial compensation for their services as broker.

(4)Kopp Investment Corp......................... 33,613 * 33,613 0 * Max H. Callen.................. 5,891 * 891 5,000 * Eames Irvin.................... 5,071 * 471 4,600 * Allen J. Moore................. 3,417 * 3,417 0 * George W. Peterson............. 8,601 * 8,601 0 * William B. Shreve.............. 3,946 * 2,946 1,000 * Thomas C. Smith................ 63,420 * 47,420 16,000 * A. John Walters................ 9,691 * 5,891 3,800 * John P. Kanouff................ 16,850 * 16,850 0 * Robert H. Taggart.............. 3,370 * 3,370 0 * James M. McCrory............... 500 * 500 0 * Leroy J. Schroeder............. 2,500 * 2,500 0 * Namaste, Ltd................... 2,225 * 2,225 0 * Deltron, Ltd................... 2,225 * 2,225 0 * Michael G. Fugler.............. 800 * 800 0 * Shelley K. Gluck............... 250 * 250 0 * Advisors, LLC acts as the advisor to Kopp Emerging Growth Fund. Voting and dispositive power over the shares held by Kopp Emerging Growth Fund are exercised by a portfolio management committee of Kopp Investment Advisors, LLC presently consisting of LeRoy Kopp, Sally Anderson and Steven Crowley.

(5)All shares to be sold and beneficially owned represent shares issuable upon the exercise of warrants. Oppenheimer & Co. Inc. (“Oppenheimer”) served as placement agent for the private placement of securities to various institutional investors which closed on October 31, 2005. Warrants were issued to Oppenheimer as partial compensation for their services as placement agent.

(6)Lehman Brothers Holdings Inc., Lehman Brothers Inc. and LB I Group Inc. have voting and dispositive power over these shares. Shares beneficially owned consist of 3,960,396 shares of common stock held in the name of LB I Group Inc. Shares to be sold also include warrants to purchase an additional 1,584,158 shares at $1.20 per share. These warrants are subject to a conversion cap which precludes the holder thereof from exercising such warrants to the extent that such owner would beneficially own in excess of 4.9% and 9.9% of the Company’s common stock.

(7)David M. Dobson................ 500 * 500 0 * Frank T. Marino................ 500 * 500 0 * G.S. Beckwith Gilbert.......... 300,000 1.4% 300,000 0 * Chancellor PrivateKnott and Dorset Management Group have sole or shared voting and dispositive power over these shares and warrants.

(8)Shares owned and to be sold consist of 1,422,000 shares of common stock and warrants to purchase an additional 586,800 shares at $1.20 per share. The warrants are subject to a conversion cap which precludes the holder thereof from exercising such warrants to the extent that such owner would beneficially own in excess of 9.9% of the Company’s common stock.

(9)Shares owned and to be sold consist of 1,558,396 shares of common stock and warrants to purchase an additional 623,358 shares at $1.20 per share. The warrants are subject to a conversion cap which precludes the holder thereof from exercising such warrants to the extent that such owner would beneficially own in excess of 9.9% of the Company’s common stock.

(10)Shares owned and to be sold consist of 178,000 shares of common stock and warrants to purchase an additional 71,200 shares at $1.20 per share. The warrants are subject to a conversion cap which precludes the holder thereof from exercising such warrants to the extent that such owner would beneficially own in excess of 9.9% of the Company’s common stock.

(11)Shares owned and to be sold consist of 707,000 shares of common stock and warrants to purchase an additional 282,800 shares at $1.20 per share. The warrants are subject to a conversion cap which precludes the holder thereof from exercising such warrants to the extent that such owner would beneficially own in excess of 9.9% of the Company’s common stock.

(12)Shares owned and to be sold consist of 44,500 shares of common stock and warrants to purchase an additional 17,800 shares at $1.20 per share. The warrants are subject to a conversion cap which precludes the holder thereof from exercising such warrants to the extent that such owner would beneficially own in excess of 9.9% of the Company’s common stock.

(13)Shares owned and to be sold consist of 50,500 shares of common stock and warrants to purchase an additional 20,200 shares at $1.20 per share. The warrants are subject to a conversion cap which precludes the holder thereof from exercising such warrants to the extent that such owner would beneficially own in excess of 9.9% of the Company’s common stock.

(14)Michael A. Roth and Brian J. Stark, as managing members of Stark Offshore Management, LLC, which is the investment manager of SF Capital Partners III, L.P............ 260,649 1.2% 260,649 0 *
45
SHARES BENEFICIALLY SHARES BENEFICIALLY OWNED PRIOR TO OWNED AFTER THE OFFERING THE OFFERING ------------------------- SHARES TO BE ---------------------- NAME NUMBER PERCENTAGE SOLD NUMBER PERCENTAGE - ---- ------------ ---------- ------------ --------- ---------- Citiventure 96 Partnership L.P.......................... 1,118,934 5.2% 1,118,934 0 * Chancellor PrivateLtd., have sole voting and dispositive power over these shares. Shares beneficially owned consist of 2,722,772 shares of common stock held in the name of SF Capital Offshore Partners II, L.P.... 429,142 2.0% 429,142 0 * Chancellor Private Capital Offshore Partners I, C.V..... 40,117 * 40,117 0 * Drake & Co. forLtd. Shares to be sold also include warrants to purchase an additional 1,584,158 shares at $1.20 per share. These warrants are subject to a conversion cap which precludes the accountholder thereof from exercising such warrants to the extent that such owner would beneficially own in excess of Citiventure III.............. 443,584 2.1% 443,584 0 * Berkely Investments Limited.... 126,083 * 126,083 0 * Daystar Realty Limited......... 57,310 * 57,310 0 * Hambrecht & Quist California... 27,509 * 27,509 0 * Hambrecht & Quist Employee Venture4.9% and 9.9% of the Company’s common stock.

(15)Consists of 1,980,198 shares owned by Perceptive Life Sciences Master Fund, L.P. II........ 27,509 * 27,509 0 * CLSP, L.P...................... 135,253 * 135,253 0 * CLSP/SBS I, L.P................ 50,433 * 50,433 0 * CLSP/SBS II, L.P............... 20,631 * 20,631 0 * Steve Elms..................... 2,292 * 2,292 0 * John Rumsey.................... 2,292 * 2,292 0 * Rob Olan....................... 2,292 * 2,292 0 * Vivek Jain..................... 2,292 * 2,292 0 * Dennis Purcell................. 2,292 * 2,292 0 * George Montgomery.............. 2,292 * 2,292 0 * Ltd. and warrants to purchase an additional 792,079 shares at $1.20 per share. The warrants are subject to a conversion cap which precludes the holder thereof from exercising such warrants to the extent that such owner would beneficially own in excess of 9.9% of the Company’s common stock.
- ------------------------ * less than 1% 46 RELATED PARTY TRANSACTIONS On May 19, 2000, we

(16)Shares owned and to be sold consist of 1,237,624 shares of common stock and warrants to purchase an additional 495,050 shares at $1.20 per share.

(17)Shares owned and to be sold consist of 495,050 shares of common stock and warrants to purchase an additional 198,020 shares at $1.20 per share.

(18)Shares owned and to be sold consist of 247,525 shares of common stock and warrants to purchase an additional 99,010 shares at $1.20 per share.

(19)Shares owned and to be sold consist of 247,525 shares of common stock and warrants to purchase an additional 99,010 shares at $1.20 per share.

(20)Shares owned and to be sold consist of 74,257 shares of common stock and warrants to purchase an additional 29,703 shares at $1.20 per share.

Each selling stockholder acquired, or will acquire, the shares to be sold by such selling stockholder in the assets related to our non-life sciences instrument product line to SD Acquisition Inc., a company controlled by Stephen F. Dwyer, a directorordinary course of business and, a principal stockholder of ours. These assets consisted of inventory, property, plant and equipment, patents, other intellectual property rights and a lease deposit, with an aggregate book value, net of $125,000 of accrued liabilities, of approximately $4.7 million as of March 31, 2000. These assets were sold for a total adjusted purchase price of $5.65 million plus reimbursement by the buyer of approximately $400,000 of expenses paid by us since March 31, 2000 in connection with this product line. Approximately $3,650,000 was paid in cash at the closing and $2,000,000 was paid with an interest-bearing promissory note due on December 30, 2000. The purchaser financed the cash portiontime of the purchase price for these assets plus initial working capital needs with borrowingsacquisition of approximately $4.6 million obtained from a bank. We acquired the notes evidencing these loans from the bank upon closing of our initial public offering by paying it an amount equalsuch shares, no selling stockholder had any agreement or understanding, directly or indirectly, to the entire principal balance of the loans plus accrued and unpaid interest. These acquired notes were consolidated with the original $2.0 million note. All of the principal of and accrued interest on this consolidated note was repaid prior to maturity. On December 29, 2000, we repurchased 261,904 shares of our common stock from Mr. Dwyer for $10.50 per share, which was the closing price for our common stock on that day, for an aggregate purchase price of $2,749,992. Mr. Dwyer used the proceeds from this sale to partially prepay the principal of and interest on the consolidated note. Since early 1999, we have had discussions with potential purchasers of the assets relating to our non-life sciences product line, each of which was unaffiliated with us. In some cases, our management approached companies that we identified as potential purchasers of these assets based on the nature of their existing businesses. In other cases, these discussions were unsolicited. Based on our knowledge of the industry, our management believes that we contacted the most likely buyers of these assets. As a result, we did not engage any business brokers or finders, nor did we use any advertising to locate a buyer for these assets. These discussions resulted in a single offer, other than Mr. Dwyer's. This offer specified a total purchase price of $4,000,000 and would have required us to assume employee severance and other windup costs. Since this was an arm's-length offer, we believe that it represented a fair market valuation of these assets. In addition, we considered the book value of these assets to be a reasonable approximation of their fair market value. Therefore, we did not obtain an independent appraisal of these assets. The purchase price and other terms of the transaction were determined through negotiation between us and Mr. Dwyer and was approved by our disinterested directors. We expect to acquire peripheral components of our WAVE System,distribute such as the autosampler, from SD Acquisition Inc., although we have no agreement to do so. All components will be acquired at market prices. We may purchase any or all of these components from other suppliers. Mr. Dwyer will act as a consultant to us until June 2001. We will pay Mr. Dwyer a retainer of $70,000 for serving in this capacity. On February 10, 2000, we borrowed $204,190 from Stephen F. Dwyer. We delivered an unsecured promissory note for this loan which bears interest at a rate of 9.75% per annum and was repaid on August 10, 2000. Collin J. D'Silva, Stephen F. Dwyer and Douglas T. Gjerde were partners of CT Partners, an Iowa general partnership, along with various other individuals, some of whom are relatives of Mr. D'Silva and Mr. Dwyer. Mr. D'Silva, Mr. Dwyer and Dr. Gjerde held partnership interests of 28.6%, 23.8% and 4.8%, respectively, in CT Partners. In 1997, our predecessor company agreed to provide CT Partners with research and development services to assist CT Partners in the development of miniature solid-state optical spectrometry technology to which it held the rights. Our predecessor company was 47 entitled to a fee for these services and for reimbursement of its expenses. In addition, our predecessor company entered into a royalty agreement with CT Partners under which it received an exclusive license to manufacture and market this technology and agreed to pay CT Partners a royalty of up to $6,500,000 based on the sales of products employing this technology. On June 3, 1999, we acquired the rights to this technology from CT Partners for a purchase price of $2,000,000. The purchase price was offset by the cancellation of principal and interest due on promissory notes given to us by CT Partners in payment of the fees and expense reimbursements owed to us by it. Principal and interest on these notes plus additional accrued expenses equaled $1,085,931. The sale price was based on the present value of anticipated future net income from the sale of products associated with the technology. While we believe the terms of this transaction represent the fair value of the acquired technology, neither we nor CT Partners obtained an independent valuation of the technology or took any other steps to determine what an unaffiliated party would have paid for this technology. The royalty agreement was cancelled as a result of the sale of the technology rights by CT Partners to us. We will sell the rights to this technology in connection with the sale of assets related to the non-life sciences instrument product line described above. shares.

DESCRIPTION OF CAPITAL STOCK GENERAL

General

We can issue up to 60,000,000100,000,000 shares of our common stock and 15,000,000 shares of our preferred stock. ThereAt November 29, 2005, there are currently 21,205,56649,172,079 shares of our common stock outstanding. We have not issued any shares of preferred stock. You should read the following summary description of our capital stock in conjunction with our certificate of incorporation and our bylaws, each of which is available upon request. COMMON STOCK

Common Stock

The holders of our common stock are entitled to - one vote per share on all matters submitted to a vote of our stockholders; - the payment of any dividends declared by the Board of Directors out of legally available funds, after the superior rights of any preferred stock holdersstockholders have been satisfied;satisfied and - share ratably in company assets available for distribution to them in the event of the liquidation, dissolution, distribution of assets or winding up of the company. Company.

The holders of common stock do not have cumulative voting rights. As a result, the holders of a majority of the outstanding common stock can elect all the directors of the company. The remaining common stock holders will not be able to elect any directors. The holders of common stock have no preemptive or other subscription rights, and there are no conversion, redemption or sinking fund

provisions with respect to the common stock. All outstanding shares of common stock are, and all shares of common stock to be outstanding upon completion of this offering will be, fully paid and non-assessable. The common stock has a par value of $0.01 per share. PREFERRED STOCK

Preferred Stock

The Board of Directors is authorized to issue up to 15,000,000 shares of preferred stock in one or more series and to fix the rights, powers, preferences, qualifications, limitations and restrictions granted to or imposed on the preferred stock. The authority of the Board of Directors includes the right to fix dividend rights, conversion rights, terms of redemption, liquidation preference, sinking fund terms and the number of shares constituting any series or the designation of a series, without any further vote or action by the stockholders. The preferred stock may be issued with a preference over the common stock as to the payment of dividends. The Board of Directors, without stockholder approval, can issue 48 preferred stock with voting and conversion rights that could adversely affect the voting power of the holders of common stock. The issuance of preferred stock could have the effect of delaying, deferring or preventing a change in control of Transgenomic.the Company. For the foregoing reasons, any preferred stock we issue could adversely affect your rights as a holder of our common stock. We do not have any present plans to issue preferred stock. WARRANTS As of the date of this prospectus, we have 106,754

Warrants

At November 29, 2005, warrants representing 8,062,577 common shares are outstanding warrantsat exercise prices ranging from $1.18 to purchase common stock at an exercise price equal to $5.00$3.27 per share. These warrants will expire in 2003.have terms expiring from 2007 to 2010. All of the warrants contain provisions for the adjustment of the exercise price and the aggregate number of shares that may be issued upon the exercise of the warrant if a stock dividend, stock split, reorganization, reclassification or consolidation occurs. OPTIONS AsAdditionally, the warrants held by Laurus Master Fund, Ltd. contain a provision for the adjustment of the dateexercise price and the aggregate number of this prospectus,shares that may be issued upon the exercise of the warrant in the event that we have outstanding options to purchase 4,034,881issue shares of our common stock at a price per share which is less than the exercise price in effect at the time of such issuance.

Options

At November 29, 2005, options to purchase 5,541,015 shares of our common stock are outstanding at exercise prices ranging from $5.00$1.00 to $13.00 per share. Additional options to acquire 1,774,150705,216 shares of common stock may be issued in the future under our Stock Option Plan. ANTI-TAKEOVER PROVISIONS OF DELAWARE LAW AND CHARTER PROVISIONS DELAWARE LAW.

Anti-takeover Provisions of Delaware Law and Charter Provisions

Delaware Law.

In general, Section 203 of the Delaware General Corporation Law prohibits a publicly held Delaware corporation from engaging in any business combination with any interested stockholder for a period of three years following the date that the stockholder became an interested stockholder unless: -

prior to that date, the Board of Directors of the corporation approved either the business combination or the transaction that resulted in the stockholder becoming an interested stockholder; -

upon consummation of the transaction that resulted in the stockholder'sstockholder’s becoming an interested stockholder, the interested stockholder owned at least 85% of the voting stock of the corporation outstanding at the time the transaction commenced, excluding those shares owned by persons who are directors and also officers, and employee stock plans in which employee participants do not have the right to determine confidentially whether shares held under the plan will be tendered in a tender or exchange offer; or -

shares owned by persons who are directors and also officers, and employee stock plans in which employee participants do not have the right to determine confidentially whether shares held under the plan will be tendered in a tender or exchange offer; or

on or subsequent to that date, the business combination is approved by the Board of Directors and authorized at an annual or special meeting of stockholders, and not by written consent, by the affirmative vote of at least two-thirds of the outstanding voting stock that is not owned by the interested stockholder.

Section 203 defines "business combination"“business combination” to include: -

any merger or consolidation involving the corporation and the interested stockholder; -

any sale, transfer, pledge or other disposition involving the interested stockholder of 10% or more of the assets of the corporation; -

in general, any transaction that results in the issuance or transfer by the corporation of any stock of the corporation to the interested stockholder; or -

the receipt by the interested stockholder of the benefit of any loans, advances, guarantees, pledges or other financial benefits provided by or through the corporation. 49

In general, Section 203 defines an interested stockholder as any entity or person beneficially owning 15% or more of the outstanding voting stock of the corporation and any entity or person affiliated with or controlling or controlled by the entity or person. CHARTER PROVISIONS.

Charter Provisions

Our SecondThird Amended and Restated Certificate of Incorporation and Bylaws include a number of provisions that may have the effect of deterring hostile takeovers or delaying or preventing changes in control or management of Transgenomic. First, our certificate of incorporation provides that all stockholder actions must be effected at a duly called meeting of holders and not by a consent in writing. Second, our bylaws provide that special meetings of the holders may be called only by the chairman of the Board of Directors, the Chief Executive Officer or our Board of Directors pursuant to a resolution adopted by a majority of the total number of authorized directors. Third, our certificate of incorporation provides that our Board of Directors can issue up to 15,000,000 shares of preferred stock, as described under "Preferred Stock"“Preferred Stock” above. Fourth, our certificate of incorporation and the Bylaws provide for a classified Board of Directors in which approximately one-third of the directors would be elected each year. Consequently, any potential acquirer would need to successfully complete two proxy contests in order to take control of the Board of Directors. As a result of the provisions of the certificate of incorporation and Delaware law, stockholders will not be able to cumulate votes for directors. Fifth, our certificate of incorporation prohibits a business combination with an interested stockholder without the approval of the holders of 75% of all voting shares and the vote of a majority of the voting shares held by disinterested stockholders, unless it has been approved by a majority of the disinterested directors. Finally, our bylaws establish procedures, including advance notice procedures, with regard to the nomination of candidates for election as directors and stockholder proposals. These provisions of our certificate of incorporation and bylaws could discourage potential acquisition proposals and could delay or prevent a change in control or management of our company. TRANSFER AGENT AND REGISTRAR

Transfer Agent and Registrar

Wells Fargo Bank Minnesota, N.A. has been appointed as the transfer agent and registrar for our common stock. NATIONAL MARKET LISTING

National Market Listing

Our common stock is listed on the Nasdaq Stock Market'sMarket’s National Market under the symbol TBIO. 50 SHARES ELIGIBLE FOR FUTURE SALE Sales of substantial amounts of our common stock in the public market could adversely affect the market price of our common stock and our ability to raise equity capital in the future on terms favorable to us. A total of 21,205,566 shares of our common stock are outstanding. The 5,152,000 shares sold by us in our initial public offering, shares issued under our stock option plan and 3,200,547 shares that we have registered for certain shareholders (including the 3,195,047 covered by this prospectus) are freely tradable without restriction or further registration under the Securities Act, unless these shares are purchased by "affiliates" as that term is defined in Rule 144 under the Securities Act. A total of 12,763,096 shares of common stock are "restricted securities" as that term is defined in Rule 144 under the Securities Act. Restricted securities may be sold in the public market only if registered or if they qualify for an exemption from registration under Rules 144 under the Securities Act which is summarized below. RULE 144 In general, under Rule 144 as currently in effect a person who has beneficially owned shares of our common stock for at least one year, including any affiliate of ours, is entitled to sell, within any three-month period, a number of shares that is not more than the greater of: - 1% of the number of shares of common stock then outstanding, which currently equals approximately 212,000 shares; or - the average weekly trading volume of the common stock on the Nasdaq National Market during the four calendar weeks before a notice of the sale on Form 144 is filed. Sales under Rule 144 are also subject to manner of sale provisions and notice requirements and to the availability of current public information about us. RULE 144(K) Under Rule 144(k), a person who is not deemed to have been one of our affiliates at any time during the 90 days before a sale, and who has beneficially owned the restricted shares for at least two years, including the holding period of any prior owner other than an affiliate, is entitled to sell the shares without complying with the manner of sale, public information, volume limitation or notice provisions of Rule 144. 51

PLAN OF DISTRIBUTION

The selling stockholders and any of their pledges, assignees, donees selling shares received from such selling stockholders as a gift, and successors-in-interest may, from time to time, sell any or all of their shares of our common stock from time to time. The selling stockholders will act independently of uson any stock exchange, market or trading facility on which the shares are traded or in making decisions regarding the timing, manner and size of each sale. Theprivate transactions. These sales may be made on the Nasdaq National Marketat fixed or in the over-the-counter market or otherwise, at prices and at terms then prevailing or at prices related to the then current market price, or in negotiated transactions.prices. The selling stockholders may effect such transactions by selling the shares to or through broker-dealers. The shares may be sold byuse any one or more of or a combination of, the following: - a following methods when selling shares:

ordinary brokerage transactions and transactions in which the broker-dealer solicits purchasers;

block tradetrades in which the broker-dealer will attempt to sell the shares as agent but may position and resell a portion of the block as principal to facilitate the transaction, - transaction;

purchases by a broker-dealer as principal and resale by suchthe broker-dealer for its account under this prospectus, - account;

an exchange distribution in accordance with the rules of such exchange, - ordinary brokerage transactions and transactions in which the broker solicits purchasers, and - in applicable exchange;

privately negotiated transactions. Totransactions;

broker-dealers may agree with the extent required,selling stockholders to sell a specified number of such shares at a stipulated price per share;

a combination of any such methods of sale; and

any other method permitted pursuant to applicable law.

The selling stockholders may also sell shares under Rule 144 under the Securities Act of 1933, as amended, if available, rather than under this prospectus may be amended or supplemented from time to time to describe a specific plan of distribution. In effecting sales, broker-dealersProspectus.

Broker-dealers engaged by the selling stockholders may arrange for other broker-dealers to participate in sales. Broker-dealers may receive commissions or discounts from the resales. The selling stockholders may enter into hedging transactions with broker-dealers in connection with distributions(or, if any broker-dealer acts as agent for the purchaser of the shares, or otherwise. In these transactions, broker-dealers may engage in short sales of the shares in the course of hedging the positions they assume with selling stockholders. The selling stockholders also may sell shares short and redeliver the shares to close out such short positions. The selling stockholders may enter into option or other transactions with broker-dealers which require the delivery to the broker-dealer of the shares. The broker-dealer may then resell or otherwise transfer such shares under this prospectus. The selling stockholders also may lend or pledge their shares to a broker-dealer. The broker-dealer may sell the shares so lent, or upon a default the broker-dealer may sell the pledged shares under this prospectus. Broker-dealers or agents may receive compensation in the form of commissions, discounts or concessions from selling stockholders. Broker-dealers or agents may also receive compensation from the purchasers of the shares for whom they act as agents or to whom they sell as principals, or both. Compensation as to a particular broker-dealer might be in excess of customary commissions and will bepurchaser) in amounts to be negotiatednegotiated. The selling stockholders do not expect these commissions and discounts to exceed what is customary in connection with the sale. Broker-dealerstypes of transactions involved.

The selling stockholders and any broker-dealers or agents and any other participating broker-dealers orthat are involved in selling the selling stockholdersshares may be deemed to be "underwriters"“underwriters” within the meaning of Section 2(11) of the Securities Act of 1933 (the "Securities Act") in connection with sales of the shares. Accordingly,such sales. In such event, any such commission, discount or concessioncommissions received by themsuch broker-dealers or agents and any profit on the resale of the shares purchased by them may be deemed to be underwriting discountscommissions or commissionsdiscounts under the Securities Act. Because selling stockholders may be deemed

We are required to be "underwriters" withinpay all fees and expenses incident to the meaning of Section 2(11)registration of the Securities Act,shares, including certain fees and disbursements of counsel to the selling stockholders. We have agreed to indemnify the selling stockholders will be subject to the prospectus delivery requirements ofagainst certain losses, claims, damages and liabilities, including liabilities under the Securities Act. In addition, any securities covered by

To the extent required, we will amend or supplement this prospectus which qualify for sale under Rule 144 promulgated under the Securities Act may be sold under Rule 144 rather than under this prospectus. The selling stockholders have advised us that they have not entered into any agreements, understandings orProspectus to disclose material arrangements with any underwriters or broker-dealers regarding the saleplan of their securities. There is no underwriter or coordinating broker acting in connectiondistribution.

To comply with the proposed salesecurities laws of shares by the selling stockholders. The shares will be sold only throughcertain jurisdictions, registered or licensed brokers or dealers if required under applicable state securities laws. In addition, in certain statesmay need to offer or sell the shares may not be sold unless they 52 have been registered or qualified for sale in the applicable state or an exemption from the registration or qualification requirement is available and is complied with. Underoffered by this Prospectus. The applicable rules and

regulations under the Securities Exchange Act of 1934, as amended, may limit any person engaged in thea distribution of the shares may not simultaneouslyof common stock covered by this Prospectus in its ability to engage in market making activities with respect to our common stocksuch shares. A selling stockholder, for a period of two business days prior to the commencement of such distribution. In addition, each selling stockholderexample, will be subject to applicable provisions of the Exchange Act and the associated rules and regulations under the Exchange Act, including Regulation M,it, which provisions may limit the timing of purchases and sales of any shares of our common stock by thethat selling stockholders. We will make copies of this prospectus available to the selling stockholders and have informed them of the need to deliver copies of this prospectus to purchasers at or prior to the time of any sale of the shares. We will file a supplement to this prospectus, if required, to comply with Rule 424(b) under the Securities Act upon being notified by a selling stockholder that any material arrangements have been entered into with a broker-dealer for the sale of shares through a block trade, special offering, exchange distribution or secondary distribution or a purchase by a broker or dealer. Such supplement will disclose: - the name of each such selling stockholder and of the participating broker-dealer(s), - the number of shares involved, - the price at which such shares were sold, - the commissions paid or discounts or concessions allowed to such broker-dealer(s), where applicable, - that such broker-dealer(s) did not conduct any investigation to verify the information set out or incorporated by reference in this prospectus, and - other facts material to the transaction. In addition, upon being notified by a selling stockholder that a donee or pledgee intends to sell more than 500 shares, we will file a supplement to this prospectus. We will bear all costs, expenses and fees in connection with the registration of the shares. stockholder.

EXPERTS

The selling stockholders will bear all commissions and discounts, if any, attributable to the sales of the shares. The selling stockholders may agree to indemnify any broker-dealer or agent that participates in transactions involving sales of the shares against certain liabilities, including liabilities arising under the Securities Act. LEGAL MATTERS The validity of the common stock offered by this prospectus will be passed upon for us by Kutak Rock LLP, Omaha, Nebraska. EXPERTS Theconsolidated financial statements as of December 31, 19982004 and 19992003 and for each of the three years in the period ended December 31, 19992004 included in this prospectusProspectus have been audited by Deloitte & Touche LLP, an independent auditors,registered public accounting firm, as stated in their report (which report expresses an unqualified opinion and includes explanatory paragraphs relating to an extension of the waiver of the borrowing base limit through March 31, 2006 and the restatement of the Company’s consolidated statements of cash flows for the years ended December 31, 2004 and 2003), appearing herein and arehave been so included in reliance upon the report of such firm given upon their authority as experts in accounting and auditing. 53

LEGAL OPINIONS

The validity of the common stock offered by this Prospectus has been passed upon for us by Kutak Rock LLP, Omaha, Nebraska.

WHERE YOU CAN FIND MORE INFORMATION

We have filedfile annual, quarterly and special reports, proxy statements and other information with the Securities and Exchange Commission a registration statement on Form S-1 under(the “SEC”). You may read and copy the Securities Act with respect to the shares of common stock offered hereby. This prospectus is only a part of the registration statement and does not contain all of the information included in the registration statement. Further information with respect to Transgenomic, Inc. and the common stock offered hereby can be found in the registration statement and the exhibits and schedules thereto. The exhibits to the registration statement include the full text of contracts, agreements and other documents described in this prospectus. You should refer to these exhibits when reading the descriptions of these documents contained in this prospectus. The registration statement and the exhibits and schedules thereto may be inspected without chargematerials we file at the public reference facilities maintained by the Commission inSEC’s Public Reference Room 1024, 450 Fifthat 100 F Street, N.W.N.E., Washington, D.C. 20549, andas well as at the followingSEC’s regional offices of the Commission: Seven World Trade Center, Room 1400, New York, New York 10048 andoffice at Citicorp Center, 500 West Madison Street, SuiteRoom 1400, Chicago, Illinois 60661. Copies of such materials can be obtained from the Public Reference Section of60661-2511. Please call the Commission at 450 Fifth Street, N.W., Washington, D.C. 20549, Room 1024, at prescribed rates. The public may obtain1-800-SEC-0330 for further information on the operation of the Public Reference Room by callingRooms. Our SEC filings are also available to the SEC at 1-800-SEC-0330. In addition, we are required to file electronic versions of these documents withpublic from the Commission throughSEC’s World Wide Web site on the Commission's Electronic Data Gathering, Analysis, and Retrieval (EDGAR) system. The Commission maintains an internet siteInternet at http://www.sec.gov thatwww.sec.gov. This site contains reports, proxy and information statements and other information regarding registrantsissuers that file electronically with the Commission. SEC.

We are subject to the information reporting requirements of the Securities Exchange Act of 1934, as amended, and filemake reports proxy statements and other informationfiled by us with the Commission. 54 SEC available free of charge on our website as soon as reasonably practical after these reports are filed. We maintain a site on the World Wide Web at www.transgenomic.com. The information contained in our website is not part of this Prospectus and you should not rely on it in deciding whether to invest in our common stock.

TRANSGENOMIC INC. AND SUBSIDIARIES

INDEX TO CONSOLIDATED FINANCIAL STATEMENTS

PAGE --------
Page No.

UNAUDITED CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

Unaudited Consolidated Financial Statements: Condensed Consolidated Balance SheetsSheet as of December 31, 1999 and September 30, 2000............................. F-22005

F-1

Unaudited Condensed Consolidated Statements of Operations for the nine months endedNine Months Ended September 30, 19992005 and 2000............................. F-32004

F-2

Unaudited Condensed Consolidated Statements of Cash Flows for the nine months endedNine Months Ended September 30, 19992005 and 2000............................. F-4 2004

F-3

Notes to Unaudited Condensed Consolidated Financial Statements for the nine months ended September 30, 1999 and 2000....... F-5 Audited Consolidated Financial Statements:

F-4

CONSOLIDATED FINANCIAL STATEMENTS

Report of Independent Auditors' Report.............................. F-10 Registered Public Accounting Firm

F-14

Consolidated Balance Sheets as of December 31, 19982004 and 1999.................................................... F-11 2003

F-15

Consolidated Statements of Operations for the years endedYears Ended December 31, 1997, 19982004, 2003 and 1999........................ F-12 2002

F-16

Consolidated Statements of Stockholders'Stockholders’ Equity (Deficit) for the years endedYears Ended December 31, 1997, 19982004, 2003 and 1999.... F-13 2002

F-17

Consolidated Statements of Cash Flows for the years endedYears Ended December 31, 1997, 19982004, 2003 and 1999........................ F-14 2002

F-18

Notes to Consolidated Financial Statements for the years ended December 31, 1997, 1998 and 1999.................. F-15 Unaudited Pro Forma Financial Information: Unaudited Pro Forma Statement of Operations for the nine months ended September 30, 2000......................... F-31 Unaudited Pro Forma Statement of Operations for the year ended December 31, 1999................................. F-32 Notes to Unaudited Pro Forma Financial Information........ F-33

F-19
F-1


TRANSGENOMIC INC.

UNAUDITED CONDENSED CONSOLIDATED BALANCE SHEETS AS OF DECEMBER 31, 1999 AND SEPTEMBERSHEET

As of September 30, 2000 (UNAUDITED)
DECEMBER 31, SEPTEMBER 30, 1999 2000 ------------- -------------- ASSETS CURRENT ASSETS Cash & Cash Equivalents................................... $ 153,336 $ 60,431,360 Accounts Receivable--Net.................................. 6,199,059 5,466,184 Inventories............................................... 3,918,866 2,729,610 Prepaid Expenses and Other Current Assets................. 623,461 1,348,421 Notes Receivable from Related Party....................... -- 6,807,072 ------------ ------------ Total Current Assets.................................... 10,894,722 76,782,647 PROPERTY & EQUIPMENT Equipment................................................. 4,695,785 4,698,411 Furniture & Fixtures...................................... 1,567,370 1,175,586 ------------ ------------ Total Property & Equipment.............................. 6,263,155 5,873,997 Less: Accumulated Depreciation............................ 3,682,016 2,276,388 ------------ ------------ Net Property & Equipment................................ 2,581,139 3,597,609 ------------ ------------ Intangible Assets........................................... 2,690,608 819,914 Demonstration Inventory..................................... 2,124,159 163,032 Other Assets................................................ 1,672,882 2,097,325 ------------ ------------ Total Assets................................................ $ 19,963,510 $ 83,460,527 ============ ============ LIABILITIES AND STOCKHOLDERS' EQUITY (DEFICIT) CURRENT LIABILITIES Notes Payable--Bank....................................... $ 4,340,000 $ -- Current Portion of Notes Payable--Other................... 579,724 -- Accounts Payable.......................................... 2,827,186 3,660,900 Accrued Expenses.......................................... 1,778,090 2,301,398 Deferred Gain on Sale of Assets........................... -- 904,830 ------------ ------------ Total Current Liabilities............................... 9,525,000 6,867,128 LONG-TERM LIABILITIES Notes Payable--Other, Less Current Maturies............... 116,958 -- Convertible Notes Payable................................. 12,421,010 -- Commitments and Contingencies STOCKHOLDERS' EQUITY (DEFICIT) Preferred Stock $.01 Par Value, 15,000,000 Shares Authorized, None Outstanding............................ -- -- Common Stock $.01 Par Value, 60,000,000 Shares Authorized, 13,000,000 and 21,407,637 issued and outstanding in 1999 and 2000................................................ 130,000 214,029 Additional Paid-in Capital................................ 10,231,595 97,692,116 Deferred Stock Based Compensation......................... (112,500) (563,406) Accumulated Other Comprehensive Income (Loss)............. (4,478) (116,452) Accumulated Deficit....................................... (12,344,075) (20,632,888) ------------ ------------ Total Stockholders' Equity (Deficit).................... (2,099,458) 76,593,399 ------------ ------------ Total Liabilities and Stockholders' Equity (Deficit)............................................ $ 19,963,510 $ 83,460,527 ============ ============
SEE NOTES TO UNAUDITED CONSOLIDATED FINANCIAL STATEMENTS. F-2 2005

(Dollars in thousands except per share data)

   September 30,
2005


 

ASSETS

     

CURRENT ASSETS:

     

Cash and cash equivalents

  $1,361 

Short-term investments

   1,556 

Accounts receivable (net of allowances for bad debts of $896)

   8,729 

Inventories

   4,101 

Prepaid expenses and other current assets

   652 
   


Total current assets

   16,399 
   


PROPERTY AND EQUIPMENT:

     

Land and buildings

   2,221 

Equipment

   18,066 

Furniture and fixtures

   5,833 
   


    26,120 

Less: accumulated depreciation

   15,509 
   


    10,611 

GOODWILL

   638 

OTHER ASSETS

   4,141 
   


   $31,789 
   


LIABILITIES AND STOCKHOLDERS’ EQUITY

     

CURRENT LIABILITIES:

     

Accounts payable

  $2,463 

Accrued expenses

   4,383 

Accrued compensation

   530 

Line of credit

   6,935 

Current portion of long-term debt

   675 
   


Total current liabilities

   14,986 

Long-term debt

   1,226 
   


Total liabilities

   16,212 
   


COMMITMENTS AND CONTINGENCIES (Note F)

     

STOCKHOLDERS’ EQUITY:

     

Preferred stock, $.01 par value, 15,000,000 shares authorized, none outstanding

   —   

Common stock, $.01 par value, 60,000,000 shares authorized, 34,246,336 shares outstanding

   348 

Additional paid-in capital

   125,058 

Accumulated other comprehensive income

   1,051 

Accumulated deficit

   (110,880)
   


Total stockholders’ equity

   15,577 
   


   $31,789 
   


See notes to consolidated financial statements.

TRANSGENOMIC INC.

UNAUDITED CONDENSED CONSOLIDATED STATEMENTS OF OPERATIONS FOR THE NINE MONTHS ENDED SEPTEMBER

Nine Months Ended September 30, 1999 AND 2000 (UNAUDITED)
1999 2000 ----------- ----------- Net Sales................................................... $16,903,128 $18,785,721 Cost of Goods sold.......................................... 9,039,855 9,401,352 ----------- ----------- Gross Profit.............................................. 7,863,273 9,384,369 Operating Expenses: Selling, General and Administrative....................... 8,531,069 10,362,474 Research and Development.................................. 4,139,911 5,650,088 Stock Based Compensation Expense.......................... -- 791,327 ----------- ----------- 12,670,980 16,803,889 Loss From Operations........................................ (4,807,707) (7,419,520) Interest Expense............................................ (885,072) (1,776,110) Interest Income............................................. 107,281 919,977 Other Income (Expense), Net................................. 18,256 (13,160) ----------- ----------- Loss Before Income Taxes.................................... (5,567,242) (8,288,813) Income Tax Expense.......................................... 1,860,639 -- ----------- ----------- Net Loss.................................................. $(7,427,881) $(8,288,813) =========== =========== Shares Used in Net Loss Per Common Share Calculations--Basic and Diluted............................................... 13,000,000 15,021,504 Net Loss Per Common Share--Basic and Diluted................ $ (0.57) $ (0.55)
SEE NOTES TO UNAUDITED CONSOLIDATED FINANCIAL STATEMENTS. F-3 2005 and 2004

(Dollars in thousands except per share data)

   Nine Months Ended
September 30,


 
   2005

  2004

 

Net sales

  $23,711  $25,834 

Cost of goods sold

   13,609   18,484 
   


 


Gross profit

   10,102   7,350 

Operating expenses:

         

Selling, general and administrative

   10,023   12,866 

Research and development

   1,696   5,344 

Impairment charges (Notes C and D)

   247   11,964 
   


 


    11,966   30,174 
   


 


Income (Loss) from operations

   (1,864)  (22,824)

Other income (expense):

         

Interest expense (Note E)

   (1,919)  (1,684)

Loss on debt extinguishment

   —     (2,859)

Other income (expense), net

   31   (161)
   


 


    (1,888)  (4,704)
   


 


Income(loss) before income taxes

   (3,752)  (27,528)

Current income tax expense (benefit)

   27   (94)
   


 


Net income (loss)

  $(3,779) $(27,434)
   


 


Basic and diluted weighted average shares outstanding

   32,837,078   28,951,230 

Net income (loss) per common share—basic and diluted

  $(0.12) $(0.95)

See notes to consolidated financial statements.

TRANSGENOMIC INC. AND SUBSIDIARIES

UNAUDITED CONDENSED CONSOLIDATED STATEMENTS OF CASH FLOWS FOR THE NINE MONTHS ENDED SEPTEMBER

Nine Months Ended September 30, 1999 AND 2000 (UNAUDITED)
1999 2000 ----------- ------------ CASH FLOWS FROM OPERATING ACTIVITIES Net Loss.................................................. $(7,427,881) $ (8,288,813) Adjustments to Reconcile Net Loss to Net Cash Flows from Operating Activities: Depreciation & Amortization............................. 762,396 1,289,302 (Gain) Loss on Sale of Assets........................... (18,240) 4,200 Accrued Interest on Convertible Notes................... 578,666 1,415,258 Non Cash Compensation Expense........................... -- 791,327 Amortization of Deferred Financing Costs................ 94,722 100,539 Deferred Tax Assets..................................... 1,834,390 -- Changes in Operating Assets and Liabilities Net of Acquisitions and Dispositions: Accounts Receivable..................................... (1,456,019) 448,837 Inventories............................................. (1,303,149) (279,540) Prepaid Expenses........................................ (89,592) (346,204) Other Assets and Liabilities............................ 9,310 34,332 Accounts Payable........................................ (334,809) 599,766 Accrued Expenses........................................ 397,983 536,569 ----------- ------------ Net Cash Flows from Operating Activities.................. (6,952,223) (3,694,427) CASH FLOWS FROM INVESTING ACTIVITIES Purchase of Property & Equipment.......................... (1,221,269) (1,629,734) Increase in Notes Receivable.............................. -- (4,807,072) Proceeds from Asset Sales................................. 19,500 3,620,570 Increase in Other Long-Term Assets........................ (1,584,480) (669,855) ----------- ------------ Net Cash Flows from Investing Activities.................. (2,786,249) (3,486,091) CASH FLOWS FROM FINANCING ACTIVITIES Net Change in Note Payable--Bank.......................... 830,000 (4,340,000) Proceeds from Notes Payable--Other........................ 12,000,000 204,000 Deferred Financing Costs.................................. (587,612) -- Payments on Notes Payable--Other.......................... (319,125) (900,682) Net Proceeds from Stock Issuance.......................... -- 72,365,247 ----------- ------------ Net Cash Flows from Financing Activities.................. 11,923,263 67,328,565 Effect of Foreign Currency Exchange Rates on Cash........... (29,561) 129,977 ----------- ------------ Net Change in Cash and Cash Equivalents..................... 2,155,230 60,278,024 Cash and Cash Equivalents at Beginning of Period............ 187,455 153,336 ----------- ------------ Cash and Cash Equivalents at End of Period.................. $ 2,342,685 $ 60,431,360 =========== ============ Non-Cash Financing Activity: Exchange of Note Receivable for Intellectual Property..... $ 1,085,931 -- Conversion of Notes Payable into Common Stock............. -- $ 13,909,299
SEE 2005 and 2004

(Dollars in thousands except per share data)

   Nine Months Ended
September 30,


 
   2005

  2004

 

CASH FLOWS FROM OPERATING ACTIVITIES:

         

Net loss

  $(3,779) $(27,434)

Adjustments to reconcile net loss to net cash flows from operating activities:

         

Depreciation and amortization

   3,294   3,607 

Impairment charges

   247   11,964 

Loss on debt extinguishment

   —     2,859 

Non-cash financing costs

   1,298   759 

(Gain)/Loss on sale of securities

   (9)  370 

Other

   2   12 

Changes in operating assets and liabilities:

         

Accounts receivable

   (626)  (2,469)

Inventories

   960   819 

Prepaid expenses and other current assets

   650   (69)

Accounts payable

   (912)  100 

Accrued expenses

   (3,101)  774 
   


 


Net cash flows from operating activities

   (1,976)  (8,708)

CASH FLOWS FROM INVESTING ACTIVITIES:

         

Proceeds from the maturities and sale of available for sale securities

   617   2,768 

Purchase of property and equipment

   (554)  (1,250)

Proceeds from sales of property and equipment

   139   —   

Change in other assets

   34   26 
   


 


Net cash flows from investing activities

   236   1,544 

CASH FLOWS FROM FINANCING ACTIVITIES:

         

Advances on line of credit

   15,367   19,691 

Payments on line of credit

   (12,848)  (13,594)

Proceeds from long-term debt

   —     2,750 

Payments on long-term debt

   (178)  (1,729)

Issuance of common stock, net of expenses

   (35)  67 
   


 


Net cash flows from financing activities

   2,306   7,185 

EFFECT OF FOREIGN CURRENCY EXCHANGE RATE CHANGES ON CASH

   (207)  (137)
   


 


NET CHANGE IN CASH AND CASH EQUIVALENTS

   359   (116)

CASH AND CASH EQUIVALENTS AT BEGINNING OF YEAR

   1,002   1,241 
   


 


CASH AND CASH EQUIVALENTS AT END OF PERIOD

  $1,361  $1,125 
   


 


SUPPLEMENTAL CASH FLOW INFORMATION

         

Cash paid during the period for:

         

Interest

  $491  $390 

Income taxes, net

   27   (94)

Non-cash transactions:

         

Available for sale securities received for goods and services

   2,099   3,137 

Conversions of debt to equity

   2,535   2,000 

See notes to consolidated financial statements.

TRANSGENOMIC, INC.

NOTES TO UNAUDITED CONSOLIDATED FINANCIAL STATEMENTS. F-4 TRANSGENOMIC, INC. AND SUBSIDIARIES NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS NINE MONTHS ENDED SEPTEMBER

Nine Months Ended September 30, 1999 AND 2000 (UNAUDITED) 2005 and 2004

(Dollars in thousands except per share data)

A. CONDENSED CONSOLIDATED FINANCIAL STATEMENTS

The accompanying unaudited condensed consolidated financial statements of Transgenomic, Inc. and Subsidiaries (the "Company"“Company”) have been prepared by the Company pursuant to the rules and regulations of the Securities and Exchange Commission. Certain information and disclosures normally included in annual financial statements prepared in accordance with accounting principles generally accepted accounting principlesin the United States of America have been omitted pursuant to such rules and regulations. In the opinion of management of the Company, all adjustments (consisting of only normal and recurring accruals)items) have been made to present fairly the financial positions, the results of operations and cash flows for the periods presented.

The results of operations for the nine months ended September 30, 2005 are not necessarily indicative of the results to be expected for the full year.

Although the Company believes that the disclosures are adequate to make the information presented not misleading, these financial statements should be read in conjunction with the consolidated financial statements for the yearyears ended December 31, 19992004, 2003 and 2002 that are included elsewhere in this Registration Statement. In June 1998,

As discussed in Note L, the Financial Accounting Standards Board issued StatementCompany completed a private placement of Financial Accounting Standards No. 133, "ACCOUNTING FOR DERIVATIVE FINANCIAL INSTRUMENTS AND FOR HEDGING ACTIVITIES" (SFAS No. 133). This statement,additional common stock and warrants subsequent to September 30, 2005 which is effectiveallowed it to repay outstanding indebtedness to Laurus Master Funds Ltd. (“Laurus”) and provided $5,374 in additional working capital. While the Company’s management believes that existing sources of liquidity are sufficient to meet expected cash needs through 2006, the Company has experienced recurring net losses and has historically relied upon cash flows from investing and financing activities to offset significant cash outflows from operating activities. To the extent necessary, the Company’s management believes that they can manage costs and expenses at reduced levels to conserve working capital. The need for any such cost and expense reductions would likely delay implementation of the Company’s business plan. Ultimately, the Company must achieve sufficient revenues in order to generate positive net earnings and cash flows from operations.

Business Description

The Company develops, manufactures and sells innovative products for the Company beginning on January 1, 2001, requiresanalysis, synthesis and purification of nucleic acids through two operating segments, BioSystems and Nucleic Acids.

The BioSystems operating segment develops, assembles, manufactures and markets versatile products and provides analytical services to the recognition of all derivative financial instruments as either assets or liabilitiesmedical research, clinical and pharmaceutical markets for use in genetic variation analysis. Products and services are sold through a direct sales force in the statementUnited States and throughout much of financial positionWestern Europe. For the rest of the world, products and measurementservices are sold through more than 25 dealers and distributors located in those local markets. Net sales from this operating segment are categorized as bioinstruments, bioconsumables and Discovery Services.

Bioinstruments. The flagship product of those instruments at fair value. Management does not believe the adoptionBioSystems operating segment is the WAVE system which has broad applicability to genetic variation detection in both molecular genetic research and molecular diagnostics. There was a world-wide installed base of SFAS No. 133 will have a material effect on our financial statements. B. INVENTORIES At December 31, 1999 and1,241 WAVE systems as of September 30, 2000 inventories consist2005. Additionally, this operating segment utilizes its sales and distribution network to sell a number of independent, third party equipment platforms. Service contracts to maintain installed systems are sold and supported by technical support personnel.

Bioconsumables. The installed WAVE base generates a demand for consumables that are required for the system’s continued operation. These products are developed, manufactured and sold by this operating segment. In addition, the BioSystems operating segment manufactures and sells consumable products that can be used on multiple, independent platforms. These products include SURVEYOR Nuclease and a range of HPLC separation columns.

Discovery Services. The BioSystems operating segment provides various genetic laboratory services through a contract research lab in Gaithersburg, Maryland and a second laboratory in Omaha, Nebraska that operates in a Good Laboratory Practices (“GLP”) compliant environment and is certified under the Clinical Laboratory Improvement Amendment. The services provided primarily include (1) genomic biomarker analysis services to pharmaceutical and biopharmaceutical companies to support preclinical and clinical development of targeted therapeutics; and (2) molecular-based testing for hematology, oncology and certain inherited diseases for physicians and third-party laboratories.

TRANSGENOMIC, INC.

NOTES TO UNAUDITED CONDENSED CONSOLIDATED FINANCIAL STATEMENTS – (Continued)

Nine Months Ended September 30, 2005 and 2004

(Dollars in thousands except per share data)

The Nucleic Acids operating segment develops, manufactures and markets chemical building blocks for nucleic acid synthesis to biotechnology, pharmaceutical, oligonucleotide synthesis companies and research institutions throughout the world. These products are produced primarily in this operating segment’s only facility in Glasgow, Scotland. Prior to November 11, 2004, this operating segment also manufactured synthesized segments of large-scale, GMP nucleic acids (known as oligonucleotides) in a facility in Boulder, Colorado. On November 11, 2004, the assets associated with this facility were sold to an unaffiliated, third party. As a result, the Nucleic Acids operating segment no longer manufactures and sells these specialized oligonucleotides. A substantial portion of this operating segment’s revenues during 2005 and 2004 have been derived from one customer.

Principles of Consolidation.

The condensed consolidated financial statements include the accounts of Transgenomic, Inc. and its wholly-owned subsidiaries. All intercompany balances and transactions have been eliminated in consolidation.

Use of Estimates.

The preparation of consolidated financial statements requires management to make estimates and assumptions that affect the reported amounts of assets and liabilities and disclosure of contingent assets and liabilities at the date of the following:
1999 2000 ---------- ----------- Finished goods...................................... $ 157,216 $ 1,190,626 Raw materials and work in progress.................. 2,786,958 1,021,023 Demonstration inventory............................. 3,098,851 680,993 ---------- ----------- 6,043,025 2,892,642 Less: Long-term demonstration inventory............. (2,124,159) (163,032) ---------- ----------- $3,918,866 $ 2,729,610 ========== ===========
financial statements and the reported amounts of revenues and expenses during the reporting period. In particular, estimates of the valuation of long-term inventory are subject to considerable estimation error due to the inherent uncertainty in projecting sales of this product over a period of years. In addition, estimates and assumptions associated with the determination of fair value of certain assets and related impairments, and the determination of goodwill impairments require considerable judgment by management. Actual results could differ from the estimates and assumptions used in preparing these financial statements.

Cash and Cash Equivalents.

For purposes of reporting cash flows, cash and cash equivalents include cash and temporary investments with original maturities at acquisition of three months or less.

Accounts Receivable.

Accounts receivable are shown net of allowance for doubtful accounts. The following is a summary of activity for the allowance for doubtful accounts.

   September 30,

   2005

  2004

Beginning balance

  $1,051  $549

Charges to income

   —     46

Deductions from reserves

   155   15
   

  

Ending balance

  $896  $580
   

  

Revenue Recognition.

Revenue on the sales of products is recognized in accordance with the terms of the sales arrangement. Such recognition is based on receipt of an unconditional customer order and transfer of title and risk of ownership to the customer, typically upon shipment of the product. Our sales terms do not provide for the right of return unless the product is damaged or defective. Revenues from certain services associated with our analytical instruments, to be performed subsequent to shipment of the products, is deferred and recognized when the services are provided. Such services, mainly limited to installation and training services that are not essential to the functionality of the instruments, typically are performed in a timely manner subsequent to shipment of the instrument. The Company also enters into various service contracts that cover installed WAVE systems. These contracts cover specific time periods and revenue associated with these contracts is deferred and recognized over the service period. At September 30, 2005, deferred revenue associated with the Company’s service contracts was approximately $1,600 and is included in “accrued expenses” in the accompanying unaudited consolidated balance sheets.

TRANSGENOMIC, INC.

NOTES TO UNAUDITED CONDENSED CONSOLIDATED FINANCIAL STATEMENTS – (Continued)

Nine Months Ended September 30, 2005 and 2004

(Dollars in thousands except per share data)

During the nine months ended September 30, 2000,2004, the Company reclassified demonstration inventoryrecognized approximately $646 of approximately $1.0 millionproduct sales under bill-and-hold arrangements. Under these arrangements, the customer had accepted title and risk of ownership to property and equipment. C. NOTES PAYABLE At December 31, 1999, Notes Payable consisted of borrowings against a revolving line of credit and other installment notes. On July 21, 2000,the product, but had requested that the Company paid in fullstore the outstanding balances plus accrued interest for these notes with the proceeds received from its initial public offering. On February 10, 2000, the Company borrowed approximately $204,000 from a director and principal stockholder. The promissory note had an interest rate of 9.75% per annum and was repaidproduct on August 10, 2000. F-5 TRANSGENOMIC, INC. AND SUBSIDIARIES NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS NINE MONTHS ENDED SEPTEMBER 30, 1999 AND 2000 (CONTINUED) (UNAUDITED) D. STOCKHOLDERS' EQUITY AND STOCK OPTIONS STOCKHOLDERS' EQUITY. On March 30, 2000, the Company's stockholders approved an increase in the number of authorized common shares to 60,000,000. In March 2000, the Company issued 25,000 common shares at $10.00 per share to an individual who was subsequently elected to the Company's Board of Directors. On July 21, 2000, the Company issued 5,152,000 shares of common stock in its initial public offering at $15.00 per share. After paymentbehalf of the underwriters' discounts and commissions and other expenses, the Company received net proceeds of approximately $69.9 million from this offering. In addition, the holder ofcustomer, in a warrant to purchase 300,000 shares of common stock at $5.00 per share exercised the warrant at the time of our initial public offering. The Company's $12 million convertible notes, due 2002, contained features which were impacted by our initial public offering as follows: - On the effective date of our initial public offering interest payable on the notes was accelerated through the maturity date of the notes at an annual interest rate of 3.6%. As a result, the Company recorded additional interest expense of approximately $795,000. - The Company was provided a conversion feature that would allow the Company, upon the satisfaction of certain conditions, to cause a conversion of the principal plus accrued interest into common stock of the Company at a conversion price of $5.00 per share. The conversion feature was formula driven and based partially upon the average trading price of the Company stock over 20 consecutive trading days. On August 14, 2000, the Company's Board of Directors authorized the Company to convert the notes into common stock upon meeting the required conditions. On August 15, 2000, such conditions were met, and the notes were converted into 2,750,906 shares of common stock. All principal and accrued interest at the conversion date of approximately $13.9 million was recorded to stockholders equity. OTHER COMPREHENSIVE INCOME. Results of operations for the Company's foreign subsidiary are translated using the average exchange rates during the period. Assets and liabilities are translated at the exchange rate in effect on the balance sheet dates. These translation adjustments are the Company's only component of other comprehensive income.
NINE MONTHS ENDED ------------------------------------------- SEPTEMBER 30, 1999 SEPTEMBER 30, 2000 -------------------- -------------------- Net Loss.................................................... $(7,427,881) $(8,288,813) Currency translation adjustments............................ (27,106) (111,974) ----------- ----------- Total Comprehensive Loss.................................... $(7,454,987) $(8,400,787) =========== ===========
STOCK OPTIONS. On March 30, 2000, the Company's stockholders approved an amendment to the 1997 Stock Option Plan to increase the number of shares for which common stock options can be granted to 6,000,000. During the third quarter of fiscal 2000, the Company granted 297,000 options F-6 TRANSGENOMIC, INC. AND SUBSIDIARIES NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS NINE MONTHS ENDED SEPTEMBER 30, 1999 AND 2000 (CONTINUED) (UNAUDITED) D. STOCKHOLDERS' EQUITY AND STOCK OPTIONS (CONTINUED) with exercise prices of $13.00 per share. During the second quarter of fiscal 2000, the Company granted 97,500 options with exercise prices of $13.00 per share. During the first quarter of fiscal 2000, the Company granted 364,000 options, including 59,500 options with exercise prices at $5.00 per share and recorded $297,500 in deferred compensation in connection with these grants representing the difference between the exercise price of the options granted and the deemed fair value of the common stock at the date of grant. These amounts, along with $112,500 of deferred compensation recorded at December 31, 1999, are being amortized by charges to operations over the vesting periods of the individual stock options using the straight-line method. Such amortization expense amounted to approximately $60,000 forrented freezer, until the nine months ended September 30, 2000. In connection with the sale of the Company's non-life science instrument product line, the Company accelerated the vesting of 71,700 options, which would have otherwise been forfeited. Compensation expense of approximately $574,000 was recorded for these options during the first quarter of 2000, representing the difference between the exercise price of the options and the deemed fair value of the common stock at the date the vesting was accelerated. In addition, 218,700 options2004. There were forfeited as a result of the sale. Included in the 364,000 options granted in the first quarter were 128,000 options granted to non-employeesno sales under consulting and other service agreements. The Company recorded approximately $100,000 of compensation expense and $271,000 of deferred compensation associated with these grants, which is being amortized over the respective service periods using the graded vesting method, which is an accelerated method of amortization. These expense amounts were calculated using the Black-Scholes option pricing model with the following assumptions: no common stock dividends, risk-free interest rates of 6.30% to 6.57%, volatility of 35%, and an expected option life of 1 to 5 years. Such amortization expense amounted to approximately $60,000 for the nine months ended September 30, 2000. The following table summarizes activity under the 1997 Stock Option Planbill-and-hold arrangements recognized during the nine months ended September 30, 2000.
NUMBER OF WEIGHTED AVERAGE OPTIONS EXERCISE PRICE --------- ---------------- Balance at December 31, 1999....................... 3,537,750 $ 5.00 Granted........................................ 758,500 11.82 Exercised...................................... (153,769) 5.04 Canceled....................................... (358,300) 5.80 --------- ------ Balance at September 30, 2000...................... 3,784,181 $ 5.75 ========= ====== Exercisable at September 30, 2000.................. 2,075,541 $ 5.33 --------- ------
2005.

Stock Based Compensation.

The Company accounts for its employee stock option grants under the provisions of Accounting Principles Board Opinion No. 25,Accounting for Stock Issued to Employees, which utilizes the intrinsic value method. Accordingly, compensation cost for stock options is measured as the excess, if any, of the fair market value of the Company’s common stock at the date of grant over the stock option exercise price. Stock option grants to non-employees are accounted for using the fair value method of accounting in accordance with SFAS No. 123,Accounting for Stock-Based Compensation, using the Black-Scholes model.

The following table illustrates the effect on net loss and loss per share if the Company had applied the fair value recognition provisions of SFAS No. 123 to stock based employee compensation.

   September 30,

 
   2005

  2004

 

Net Income (Loss):

         

As reported

  $(3,779) $(27,434)

Less pro forma stock-based employee compensation expense determined under fair value method, net of related tax

   (504)  (764)
   


 


Pro forma

  $(4,283) $(28,198)
   


 


Basic and Diluted Income (Loss) Per Share:

         

As reported

  $(0.12) $(0.95)

Pro forma

  $(0.13) $(0.97)

The weighted average fair value of options granted was $6.23 forduring the first nine months of fiscal 2000. Atended September 30, 2000, the weighted average remaining contractual life of options outstanding2005 and 2004 was 7.7 years.$0.63 per share and $1.34 per share, respectively. The fair value of each stock option granted is estimated at the date of grant using the Black-Scholes option pricing model with the following weighted average assumptions for options granted induring the first nine months of fiscal 2000:ended September 30, 2005 and 2004: no common stock dividends; risk-free interest rates F-7 TRANSGENOMIC, INC. AND SUBSIDIARIES NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS NINE MONTHS ENDED SEPTEMBER 30, 1999 AND 2000 (CONTINUED) (UNAUDITED) D. STOCKHOLDERS' EQUITY AND STOCK OPTIONS (CONTINUED) ranging from 6.44%of 4.14% to 6.53%, 35% volatility;4.79%; 95% volatility in 2005 and 85% in 2004; and an expected option life rangingof 3 years. At September 30, 2005, the weighted average remaining contractual life of options outstanding was 5.5 years.

Translation of Foreign Currency.

Financial statements of subsidiaries outside the U.S. are measured using the local currency as the functional currency. The adjustments to translate those amounts into U.S. dollars are accumulated in a separate account in stockholders’ equity and are included in other comprehensive income. Foreign currency transaction gains or losses resulting from 1 to 6.9 years. Pro formachanges in currency exchange rates are included in the determination of net income (loss). Foreign currency transaction adjustments increased operating expenses by approximately $237 during the nine months ended September 30, 2005 and incomereduced operating expenses by approximately $135 during the nine months ended September 30, 2004.

Earnings or Loss Per Share.

Basic earnings or loss per share is calculated based on the weighted-average number of common shares outstanding during each period. Diluted earnings or loss per share includes shares issuable upon exercise of outstanding stock options and warrants or conversion of convertible notes, where dilutive. For all periods presented, basic and diluted weighted average shares outstanding and loss per share are identical, since all potentially dilutive securities are antidilutive. Potentially dilutive securities consist of stock options and warrants representing 5,541,015 and 1,159,421 shares of common stock, respectively, at September 30, 2005,. Additionally, the Company’s gross indebtedness to Laurus totaling $8,263 at September 30, 2005 is convertible into the Company’s

TRANSGENOMIC, INC.

NOTES TO UNAUDITED CONDENSED CONSOLIDATED FINANCIAL STATEMENTS – (Continued)

Nine Months Ended September 30, 2005 and 2004

(Dollars in thousands except per share data)

common stock at $1.00 per share, which was the closing price of the Company’s common stock on September 30, 2005. As described in Note L, this indebtedness was repaid subsequent to September 30, 2005.

Recently Issued Accounting Pronouncements

On December 16, 2004, the Financial Accounting Standards Board (FASB) issued SFAS No. 123R, “Share-Based Payment”. SFAS No.123R addresses the accounting for share-based payment transactions in which an enterprise receives employee services in exchange for (a) equity instruments of the enterprise or (b) liabilities that are based on the fair value of the enterprise’s equity instruments or that may be settled by the issuance of such equity instruments. SFAS No. 123R eliminates the ability to account for share-based compensation transactions using Accounting Principles Board Opinion No. 25 and generally requires that such transactions be accounted for using a fair-value-based method. The Company expects to adopt this standard on January 1, 2006. The Company is currently assessing the final impact of this standard on its financial position, results of operations or cash flows. This assessment includes evaluating option valuation methodologies and assumptions as well as potential changes to compensation strategies.

On November 24, 2004, the FASB issued SFAS No. 151, “Inventory Costs” – an amendment of ARB No. 43. SFAS No. 151 requires idle facility expenses, freight, handling costs, and wasted material (spoilage) costs to be excluded from the cost of inventory and expensed when incurred. It also requires that allocation of fixed production overhead be based on the normal capacity of the production facilities. SFAS No. 151 will be effective for the Company on January 1, 2006. The Company is currently assessing the final impact of this standard on its financial position, results of operations or cash flows.

B. INVENTORIES

Inventories consisted of the following at September 30, 2005.

   BioSystems

  Nucleic
Acids


  Total

Finished Goods

  $2,155  $1,529  $3,684

Raw materials and work in process

   516   2,393   2,909

Demonstration inventory

   123   —     123
   

  

  

    2,794   3,922   6,716

Less inventory classified as a long-term asset

   —     2,615   2,615
   

  

  

Net Inventory

  $2,794  $1,307  $4,101
   

  

  

The Nucleic Acids operating segment inventory at September 30, 2005 consisted primarily of chemical building blocks for synthetic nucleic acids (know as phosphoramadites) and the raw materials to produce phosphoramadites which are used and produced at the Company’s facility in Glasgow, Scotland. As of September 30, 2005, the Company has classified a portion of this inventory as a long-term other asset based on its existing sales forecasts for these products.

The Company periodically evaluates its inventory of phosphoramadites to determine whether they continue to meet quality and other specifications and over what time period such products are expected to be sold. Product that does not meet quality and other specifications can generally be re-worked to enhance purity. Costs to purify such product and related yield losses are expensed as incurred.

C. GOODWILL

Goodwill totaled $638 at September 30, 2005 and related entirely to the BioSystems. The following summarizes goodwill adjustments for the nine months ended September 30, 2000, assuming compensation2005 and 2004.

   Nine Months
Ended
September 30,


 
   2005

  2004

 

Beginning balance

  $638  $10,503 

Adjustments

   —     (9,865)
   

  


Ending balance

  $638  $638 
   

  


TRANSGENOMIC, INC.

NOTES TO UNAUDITED CONDENSED CONSOLIDATED FINANCIAL STATEMENTS – (Continued)

Nine Months Ended September 30, 2005 and 2004

(Dollars in thousands except per share data)

The Company recorded a charge of $9,865 during the nine months ended September 30, 2004 related to the impairment of goodwill associated with the Nucleic Acids operating segment. The amount of the impairment charges was based, in part, on an independent valuation performed by an unaffiliated valuation firm. The charge resulted from an interim period impairment test performed during the second quarter of 2004.

The interim period impairment test became necessary after the Company’s Board of Directors directed management during the second quarter of 2004 to explore strategic alternatives for the Nucleic Acids operating segment. This process included significant due diligence by management, third-party advisors and prospective independent buyers and other interested parties. Information obtained through this process indicated that it was more likely than not that the assets associated with the Nucleic Acids operating segment were impaired.

The Company also recorded a charge of $2,100 during the nine months ended September 30, 2004 related to the impairment of property and equipment associated with the Nucleic Acids operating segment.

D. OTHER ASSETS

Finite lived intangible assets and other assets consisted of the following at September 30, 2005.

   Cost

  Accumulated
Amortization


  Net
Book
Value


Finite Lived Intangible Assets

            

Capitalized software

  $2,132  $1,978  $154

Intellectual property

   765   518   247

Patents

   651   114   537
   

  

  

    3,548   2,610   938
   

  

  

Other Assets

            

Long Term Inventory

   2,615   —     2,615

Deferred Financing Costs

   576   326   250

Other

   543   205   338
   

  

  

    3,734   531   3,203
   

  

  

Total

  $7,282  $3,141  $4,141
   

  

  

During the nine months ended September 30, 2005, management determined that certain international patent pursuits were no longer consistent with the Company’s strategic plan. Accordingly, the Company recorded an impairment charge of $247 related to the abandonment of such pursuits.

Amortization expense for intangible assets was $717 and $728 for the Stock Option Plan had beennine months ended September 30, 2005 and 2004, respectively. Amortization expense for intangible assets is expected to be approximately $297 for the remainder of 2005, $342 in 2006, $331 in 2007, $62 in 2008, $134 in 2009, $134 in 2010 and $26 in 2011.

E. DEBT

Debt consisted of the following at September 30, 2005.

Credit Line (“Credit Line”) with Laurus

     

Gross amount due (accruing interest at 2% above prime or 8.75% at September 30, 2005, due December 2006)

  $6,588 

Debt premium

   435 

Debt discount—warrants

   (61)

Debt discount—beneficial conversion premium

   (27)
   


   $6,935 

Long-Term Debt with Laurus (“Term Note”)

     

Convertible debt (accruing interest at 2% above prime or 8.75% at September 30, 2005, due February 2007)

  $1,675 

Debt premium

   226 

Less current portion

   (675)
   


   $1,226 
   


TRANSGENOMIC, INC.

NOTES TO UNAUDITED CONDENSED CONSOLIDATED FINANCIAL STATEMENTS – (Continued)

Nine Months Ended September 30, 2005 and 2004

(Dollars in thousands except per share data)

Funds available under the Credit Line are determined by a borrowing base equal to 90% of eligible accounts receivable balances plus up to $1,000 related to inventory balances.

On August 31, 2004, Laurus agreed to extend a then existing borrowing base waiver, defer certain payments due under SFAS 123,the Term Note and reduce the interest rate on both of the Laurus Loans to 0% for any day the closing sale price of the Company’s common stock is at or above $1.75 per share. In return, the Company lowered the conversion price on each of the Laurus Loans to $1.00 per share and issued a warrant to Laurus covering an additional 400,000 common shares at an exercise price of $1.25 per share. The closing price of the Company’s common stock on August 31, 2004 was $1.20 per share.

The August 31, 2004 Laurus modifications were treated as extinguishments for financial reporting purposes since the change in present value of expected cash flows between the original and modified agreements is greater than 10%. As such, the Company recorded a loss on extinguishment of debt of $2,859 at August 31, 2004 reflecting the difference between (i) the recorded amount of debt, net of related discounts, of $7,427 and (ii) the fair value of the new debt instrument of $10,287 plus the fair value of the new warrants of $111. The difference between the fair value of the new debt of $10,287 and the face value of the debt of $8,572 represents a premium, which will be reflected as a reduction of interest expense over the life of the new debt.

On March 18, 2005, Laurus agreed to further extend the waiver of the borrowing base until March 31, 2006. In connection with this extension, the Company agreed to allow Laurus to convert $1,879 of the outstanding principal balance under the Credit Line into 3,600,000 shares of its common stock at $0.52 per share. In addition, on March 24, 2005 the Company agreed to allow Laurus to convert $650 of the outstanding principal balance of the Term Note into 1,250,000 shares of common stock at $0.52 per share. Laurus agreed to apply this Term Note conversion against substantially all remaining 2005 scheduled principal payments on such loan. The closing market price of the Company’s common stock the day before each of these conversions was $0.58 per share. No other provisions of the Company’s Credit Line or Term Note (collectively, the “Laurus Loans”) were modified, including the $1.00 conversion price for remaining debt. In conjunction with these conversions, the Company accelerated amortization of $409 of related debt premiums and discounts and recorded a charge of $1,365 related to the fair value of incremental shares received by Laurus.

Interest expense consisted of the following for the nine months ended September 30:

    
   2005

  2004

Interest paid or accrued on outstanding debt

  $477  $388

Amortization of debt premiums

   (816)  —  

Amortization of debt discounts – warrants

   24   —  

Amortization of debt discount – beneficial conversion feature

   725   809

Fair value of incremental shares received by Laurus

   1,365   —  

Deferred Financing Costs

   144   487
   


 

   $1,919  $1,684
   


 

As of September 30, 2005 principal repayments under the Term Note are scheduled as follows:
NINE MONTHS ENDED SEPTEMBER 30, 2000 ------------------- Net Loss: As reported............................................. $(8,288,813) Pro forma............................................... $(9,185,528) Basic and diluted loss per share: As reported............................................. $ (0.55) Pro forma............................................... $ (0.61)
E.$0 for the remainder of 2005, $875 in 2006, and $800 in 2007. As describe in Note L, the Company repaid the entire principal balance and terminated the Laurus Loans subsequent to September 30, 2005 with the proceeds from the private placement. Accordingly, the Company no longer has any borrowings which require scheduled principal and interest payments.

TRANSGENOMIC, INC.

NOTES TO UNAUDITED CONDENSED CONSOLIDATED FINANCIAL STATEMENTS – (Continued)

Nine Months Ended September 30, 2005 and 2004

(Dollars in thousands except per share data)

F. COMMITMENTS AND CONTINGENCIES

The Company is subject to a number of claims of various amounts, which arise out of the normal course of business. In the opinion of management, the disposition of claims currently pending will not have a material adverse effect on the Company’s financial position, results of operations or cash flows.

The Company leases certain equipment, vehicles and operating facilities. The Company’s leases related to its operating facilities currently expire on various dates through 2010. At September 30, 2005, the future minimum lease payments required under non-cancelable lease provisions were approximately $359 for the remainder of 2005, $1,233 in 2006, $443 in 2007, $189 in 2008, $193 in 2009, and $167 in 2010. Rent expense related to all operating leases was approximately $968 and $1,689 for the nine months ended September 30, 2005 and 2004, respectively.

At September 30, 2005, the Company had firm commitments totaling $872 to purchase components used in WAVE Systems.

G. INCOME TAXES

Income tax recorded during the nine months ended September 30, 2005 and 2004 related to income taxes in states, foreign countries and other local jurisdictions offset by refunds received.

Due to the Company'sCompany’s cumulative losses, in recent years, expected losses in future years and inability to utilize any additional losses as carrybacks, the Company has not provided for an income tax benefit during the nine months ended September 30, 20002005 or 2004 based on management'smanagement’s determination that it was more likely than not that such benefits would not be realized. The Company will continue to assess the recoverability of deferred tax assets and the related valuation allowance. To the extent the Company begins to generate taxable income in future periods and it determines that such valuation allowance is no longer required, the tax benefit of the remaining deferred tax assets will be recognized at such time. As of September 30, 2005, the Company’s deferred tax assets were offset by a valuation allowance of approximately $41,227.

H. STOCKHOLDERS’ EQUITY

The following shows changes to the components of stockholders’ equity during the nine months ended September 30, 2005.

   Common Stock

  Additional
Paid in
Capital


  Accumulated
Deficit


  Accumulated
Other
Comprehensive
Income (Loss)


  Total

 
   Outstanding
Shares


  Par
Value


      

Balance, January 1, 2005

  29,330,874  $299  $120,798  $(107,101) $2,539  $16,535 

Net loss

  —     —     —     (3,779)  (3,779)  (3,779)

Other comprehensive income (loss), net of tax of zero:

                        

Foreign currency translation adjustment

  —     —     —     —     (1,553)  (1,553)

Unrealized gain on available for sale securities

  —     —     —     —     65   65 
   
  

  

  


 


 


Comprehensive loss

  —     —     —     —     (5,267)    

Beneficial conversion premium

  —     —     399   —     —     399 

Issuance of shares upon conversion of Laurus Loans

  4,900,000   48   2,487   —     —     2,535 

Fair value of incremental shares issued

  —     —     1,365   —     —     1,365 

Issuance of shares for employee stock purchase plan

  15,462   1   9   —     —     10 
   
  

  

  


 


 


Balance, September 30, 2005

  34,246,336  $348  $125,058  $(110,880) $1,051  $15,577 
   
  

  

  


 


 


During the nine months ended September 30, 1999,2005, the Company established a valuation allowance offsetting previously recorded deferred tax assets. Management determined that, due to cumulative lossesissued zero and 4,900,000 shares, respectively, of common stock in recent years, expected losses in future years and inability to utilize any additional losses as carrybacks, it was more likely than not that such benefits would not be realized. As of December 31, 1999 and September 30, 2000,conjunction with conversions under the Company had net deferred tax assets of approximately $180,000. The net deferred tax asset at September 30, 2000 has been offset by a valuation allowance of approximately $7.8 million due to the Companys cumulative losses in recent years, expected losses in future years and inability to utilize any additional losses as carrybacks. F. SALE OF PRODUCT LINE On May 19, 2000, the Company sold the assets related to its non-life sciences instrument product line to a company controlled by Stephen F. Dwyer, a director and principal stockholder of the Company, for a total adjusted purchase price of $5.65 million plus reimbursement by the purchaser of approximately $400,000 of expenses paid by the Company in connection with this product line since March 31, 2000. The effective date of the transaction was April 1, 2000. Approximately $3.65 million of the purchase price was paid in cash and $2.0 million was paid with an interest-bearing promissory note due on December 30, 2000. The note bears interest at 8.75%. The purchaser financed the cash portion of the purchase price for these assets plus initial working capital needs with borrowings of approximately $4.6 million obtained from a bank. The Company acquired the notes evidencing these loans from the bank upon closing of its initial public offering on July 21, 2000 by paying to the bank an F-8 Laurus Loans.

TRANSGENOMIC, INC. AND SUBSIDIARIES

NOTES TO UNAUDITED CONDENSED CONSOLIDATED FINANCIAL STATEMENTS NINE MONTHS ENDED SEPTEMBER– (Continued)

Nine Months Ended September 30, 1999 AND 2000 (CONTINUED) (UNAUDITED) F. SALE OF PRODUCT LINE (CONTINUED) amount equal to2005 and 2004

(Dollars in thousands except per share data)

Date

 Price

 Shares
Issued


 Proceeds

 Facility

 Applied
To


January 2005 $1.00 50,000 $50 Term Note Principal
March 2005 $0.52 3,600,000  1,835 Credit Line Principal
March 2005 $0.52 1,250,000  650 Term Note Principal
     
 

    
     4,900,000 $2,535    
     
 

    

I. STOCK OPTIONS

The following table summarizes activity under the entire principal balance of the notes plus accrued and unpaid interest. The acquired notes mature on December 30, 2000, and bear interest at a rate of 8.75% per annum. A total of 1,200,000 shares of the Company's common stock owned by Mr. Dwyer is pledged as security for the notes and is held in an escrow account. The Company anticipates that it will exercise its right to cause these shares to be sold in order to pay principal and interest on the notes when due, subject to Mr. Dwyer's lock-up agreement signed in connection with the Company's initial public offering. The net assets sold and their book values as of April 1, 2000 are as follows: Inventories................................................. $2,485,722 Property, net............................................... 510,410 Other assets................................................ 1,839,611 Accrued liabilities......................................... (124,203) ---------- Net assets sold............................................. $4,711,540 ==========
The Company expects to realize an after-tax gain on the sale of these assets of approximately $710,000. The Company has deferred recognition of the gain on the sale until the earlier of (i) the repayment of the notes in full or (ii) the release of the 1,200,000 shares from the lock-up agreement. G. PRO FORMA RESULTS OF OPERATIONS The Company's unaudited pro forma results of operations for1997 Stock Option Plan during the nine months ended September 30, 19992005.

   Number of
Options


  Weighted
Average
Exercise Price


Balance at January 1, 2005

  5,088,037  $5.09

Granted

  1,123,500  $1.04

Cancelled

  (670,522) $4.21
   

   

Balance at September 30, 2005

  5,541,015  $4.37
   

   

Exercisable at September 30, 2005

  4,396,281  $5.11
   

   

The following table summarizes information about options outstanding as of September 30, 2005:

   Options Outstanding

  Options Exercisable

Range of Exercise Prices


  Number
Outstanding


  Weighted-
Average
Remaining
Contractual
Life


  Weighted-
Average
Exercise
Price


  Number
Exercisable


  Weighted-
Average
Exercise
Price


      (in years)         

$ 1.00—$ 1.30

  1,360,167  9.2  $1.08  558,384  $1.12

$ 1.31—$ 2.60

  798,167  7.6  $1.91  510,682  $1.92

$ 2.61—$ 3.90

  35,000  7.1  $2.90  23,334  $2.90

$ 3.91—$ 5.20

  2,074,700  2.3  $5.00  2,074,700  $5.00

$ 5.21—$ 6.50

  692,750  5.6  $6.15  662,150  $6.15

$ 6.51—$ 9.10

  10,000  5.6  $9.00  10,000  $9.00

$ 9.11—$10.40

  300,500  5.3  $9.88  296,500  $9.88

$10.41—$13.00

  269,731  4.6  $12.80  260,531  $12.83
   
         
    
   5,541,015  5.5  $4.37  4,396,281  $5.11
   
         
    

J. OPERATING SEGMENT AND GEOGRAPHIC INFORMATION

Operations for the BioSystems and 2000, assumingNucleic Acids operating segments are evaluated based upon specific identification of revenues and expenses associated with the salebusiness activities resulting in a segment operating income. Expenses that cannot be directly identified to an operating activity or are considered corporate overhead are not allocated to the segments in arriving at operating income for the segment. Generally, decisions regarding asset allocation, financing, taxes or other items impacting the Company’s balance sheet are made at the corporate level and, accordingly, operating segment balance sheet information is not reviewed by operating decision makers.

The following table sets forth net sales and operating income (loss) by segment.

   Nine Months Ended
September 30,


 
   2005

  2004

 

Net Sales

         

BioSystems

  $20,479  $18,450 

Nucleic Acids

   3,232   7,384 
   


 


Total

  $23,711  $25,834 
   


 


Income (Loss) from Operations

         

BioSystems

  $2,227  $(1,309)

Nucleic Acids

   (630)  (17,073)

Corporate

   (3,461)  (4,442)
   


 


Total

  $(1,864) $(22,824)
   


 


TRANSGENOMIC, INC.

NOTES TO UNAUDITED CONDENSED CONSOLIDATED FINANCIAL STATEMENTS – (Continued)

Nine Months Ended September 30, 2005 and 2004

(Dollars in thousands except per share data)

During the nine months ended September 30, 2005, sales to a large pharmaceutical company totaled $2,009 and represented 10% of net sales within the Company’s BioSystems operating segment and 9% of total consolidated net sales. Sales to this customer are governed by a non-binding master services agreement dated August 22, 2002.

During the nine months ended September 30, 2005, sales to Geron Corporation (“Geron”) totaled $1,729 and represented 54%, of net sales within the Company’s Nucleic Acids operating segment 7% total net consolidated sales. Sales to Geron are governed by a non-binding supply agreement dated June 15, 2002, as amended. Under the supply agreement and related addendums, Geron has historically paid the Company for goods and services with its common stock. The terms of each addendum generally provide that Geron pre-pay 50% of the non-life sciences instrument product line occurred astotal sales price of goods sold under the addendum upon execution of the beginningaddendum and the remaining 50% upon acceptance of the periods presentedrelated goods and services. Geron shares received by the Company are restricted for resale until they are registered with the Securities and Exchange Commission. The Company assumes all market risk related to the value of these securities and any selling costs are paid by the Company. Once registered, it has been the Company’s intent and practice to sell such securities as follows:
NINE MONTHS ENDED ----------------------------------------- SEPTEMBER 30, 1999 SEPTEMBER 30, 2000 ------------------- ------------------- Net Sales................................................... $ 9,896,261 $16,615,047 Net Loss.................................................... $(7,887,930) $(7,618,387) Basic and diluted loss per share............................ $ (0.61) $ (0.51)
F-9 soon as practical.

The following is a summary of Geron shares received and sold during the nine months ended September 30, 2005 and 2004.

Date Received


 

Shares


 

Product Sales Price


 

Date Sold


 

Net

Proceeds


 

Gain (Loss)


January 2004 85,855 $959 February 2004 $   932 $(27)
March 2004 33,662 $289 July 2004 $   263 $(26)
April 2005 101,801 $608 May 2005 $   617 $   9 
August 2005 151,550 $1,491 October 2005 $1,534 $ 43 

K. RESTRUCTURING PLAN

The Company had accrued expenses associated with its 2004 restructuring plan of $368 at September 30, 2005 that relates primarily to future rents on closed facilities (net of projected sublease rents) of which $27 is expected to be paid during the remainder of 2005 and $341 in 2006 and thereafter.

L. SUBSEQUENT EVENT

On October 31, 2005, the Company closed on a private placement of securities to institutional investors. The securities issued consisted of: (i) 14,925,743 shares of the Company’s common stock, plus (ii) five-year, non-callable warrants to purchase another 5,970,297 shares of common stock with an exercise price of $1.20 per share (the “Offering”). The aggregate purchase price for the securities sold in the private placement was $1.01 per share of common stock initially being sold (the “Purchase Price”) or $15,075. In conjunction with the private placement, the Company issued a warrant to Oppenheimer & Co., Inc. (“Oppenheimer”) to purchase 932,859 shares at $1.20 per share as part of their placement fee for the private placement.

Contemporaneously with the closing of the private placement, the Company repaid all outstanding principal and accrued interest on the Laurus Loans, including fees to facilitate the private placement and prepayment penalties to Laurus in the sum of $824. As a result, the Credit Line with Laurus has been cancelled and is no longer available to the Company.

TRANSGENOMIC, INC.

NOTES TO UNAUDITED CONDENSED CONSOLIDATED FINANCIAL STATEMENTS – (Continued)

Nine Months Ended September 30, 2005 and 2004

(Dollars in thousands except per share data)

The Company is required to register all shares of common stock sold in the Offering and issuable upon exercise of the warrants. The common stock issued to these institutional investors may be sold in the secondary market at any time once such registration is effective. Failure to register these shares in a timely manner will subject the Company to liquidated damages of 1.5% of the aggregate purchase price per month for each successive 30-day period, calculated on a pro rata basis for any partial 30-day period.

REPORT OF INDEPENDENT AUDITORS' REPORTREGISTERED PUBLIC ACCOUNTING FIRM

To the Board of Directors and Stockholders of

Transgenomic, Inc.

Omaha, Nebraska

We have audited the accompanying consolidated balance sheets of Transgenomic, Inc. and subsidiaries (the Company)“Company”) as of December 31, 19982004 and 19992003, and the related consolidated statements of operations, stockholders'stockholders’ equity (deficit), and cash flows for each of the three years in the period ended December 31, 1999.2004. These financial statements are the responsibility of the Company'sCompany’s management. Our responsibility is to express an opinion on thesethe financial statements based on our audits.

We conducted our audits in accordance with auditingthe standards generally accepted inof the United States of America.Public Company Accounting Oversight Board (United States). Those standards require that we plan and perform the audit to obtain reasonable assurance about whether the financial statements are free of material misstatement. The Company is not required to have, nor were we engaged to perform, an audit of its internal control over financial reporting. Our audit included consideration of internal control over financial reporting as a basis for designing audit procedures that are appropriate in the circumstances, but not for the purpose of expressing an opinion on the effectiveness of the Company’s internal control over financial reporting. Accordingly, we express no such opinion. An audit also includes examining, on a test basis, evidence supporting the amounts and disclosures in the financial statements. An audit also includesstatements, assessing the accounting principles used and significant estimates made by management, as well as evaluating the overall financial statement presentation. We believe that our audits provide a reasonable basis for our opinion.

In our opinion, such consolidated financial statements present fairly, in all material respects, the financial position of Transgenomic, Inc. and subsidiaries as ofat December 31, 19982004 and 1999,2003, and the results of their operations and their cash flows for each of the three years in the period ended December 31, 19992004, in conformity with accounting principles generally accepted in the United States of America. /s/

As discussed in Note O, during the first quarter of 2005, the Company obtained an extension of the waiver of the borrowing base limit through March 31, 2006.

As discussed in Note P, the Company restated its consolidated statements of cash flows for the years ended December 31, 2004 and 2003.

/s/ DELOITTE & TOUCHE LLP

Omaha, Nebraska March 7, 2000 F-10

April 14, 2005 (May 25, 2005, as to the effects of the restatement discussed in Note P)

TRANSGENOMIC, INC. AND SUBSIDIARIES

CONSOLIDATED BALANCE SHEETS AS OF DECEMBER

As of December 31, 1998 AND 1999
1998 1999 ----------- ------------ ASSETS CURRENT ASSETS: Cash and cash equivalents................................. $ 187,455 $ 153,336 Accounts receivable, net.................................. 4,425,419 6,199,059 Inventories............................................... 3,363,971 3,918,866 Prepaid expenses and other current assets................. 292,926 527,461 Deferred income taxes..................................... 114,000 -- Refundable income taxes................................... 34,000 96,000 ----------- ------------ Total current assets.................................... 8,417,771 10,894,722 PROPERTY AND EQUIPMENT: Equipment................................................. 3,272,132 4,695,785 Furniture and fixtures.................................... 1,070,569 1,567,370 ----------- ------------ 4,342,701 6,263,155 Less-accumulated depreciation............................. 2,931,886 3,682,016 ----------- ------------ 1,410,815 2,581,139 DEMONSTRATION INVENTORY..................................... 819,538 2,124,159 OTHER ASSETS................................................ 4,087,940 4,363,490 ----------- ------------ $14,736,064 $ 19,963,510 =========== ============ LIABILITIES AND STOCKHOLDERS' EQUITY (DEFICIT) CURRENT LIABILITIES: Note payable-bank......................................... $ 3,150,000 $ 4,340,000 Current portion of notes payable-other.................... 432,338 579,724 Accounts payable.......................................... 2,287,451 2,827,186 Accrued compensation...................................... 533,680 666,219 Other accrued expenses.................................... 988,950 1,111,871 ----------- ------------ Total current liabilities............................... 7,392,419 9,525,000 NOTES PAYABLE-OTHER, LESS CURRENT MATURITIES................ 694,536 116,958 CONVERTIBLE NOTES PAYABLE................................... -- 12,421,010 COMMITMENTS AND CONTINGENCIES (NOTES H, J, L, M AND N) STOCKHOLDERS' EQUITY (DEFICIT): Preferred stock, $.01 par value, 15,000,000 shares authorized, none outstanding............................ -- -- Common stock, $.01 par value, 30,000,000 shares authorized, 13,000,000 shares issued and outstanding in 1998 and 1999........................................... 130,000 130,000 Additional paid-in capital................................ 10,119,095 10,231,595 Note receivable related party............................. (1,085,931) -- Unearned compensation..................................... -- (112,500) Accumulated deficit....................................... (2,517,189) (12,344,075) Accumulated other comprehensive income (loss)............. 3,134 (4,478) ----------- ------------ Total stockholders' equity (deficit).................... 6,649,109 (2,099,458) ----------- ------------ $14,736,064 $ 19,963,510 =========== ============
SEE NOTES TO CONSOLIDATED FINANCIAL STATEMENTS. F-11 2004 and 2003

(Dollars in thousands except per share data)

   2004

  2003

 

ASSETS

         

CURRENT ASSETS:

         

Cash and cash equivalents

  $1,002  $1,241 

Accounts receivable (net of allowances for bad debts of $1,051 and $549)

   10,197   10,877 

Inventories

   5,366   10,584 

Prepaid expenses and other current assets

   1,343   1,676 
   


 


Total current assets

   17,908   24,378 

PROPERTY AND EQUIPMENT:

         

Land and buildings

   2,427   2,239 

Equipment

   19,263   20,362 

Furniture and fixtures

   5,781   9,054 
   


 


    27,471   31,655 

Less: accumulated depreciation

   13,946   12,951 
   


 


    13,525   18,704 

GOODWILL

   638   10,503 

OTHER ASSETS

   5,387   3,721 
   


 


   $37,458  $57,306 
   


 


LIABILITIES AND STOCKHOLDERS’ EQUITY

         

CURRENT LIABILITIES:

         

Accounts payable

  $3,431  $3,580 

Other accrued expenses

   7,318   3,874 

Accrued compensation

   636   959 

Line of credit

   6,514   2,142 

Current portion of long-term debt

   825   1,693 
   


 


Total current liabilities

   18,724   12,248 

Long-term debt

   2,199   —   
   


 


Total liabilities

   20,923   12,248 

COMMITMENTS AND CONTINGENCIES (Note F)

         

STOCKHOLDERS’ EQUITY:

         

Preferred stock, $.01 par value, 15,000,000 shares authorized, none outstanding

   —     —   

Common stock, $.01 par value, 60,000,000 shares authorized, 29,330,874 and 28,119,122 shares outstanding in 2004 and 2003, respectively

   299   286 

Additional paid-in capital

   120,798   115,904 

Accumulated other comprehensive income

   2,539   1,597 

Accumulated deficit

   (107,101)  (72,729)
   


 


Total stockholders’ equity

   16,535   45,058 
   


 


   $37,458  $57,306 
   


 


See notes to consolidated financial statements.

TRANSGENOMIC, INC. AND SUBSIDIARIES

CONSOLIDATED STATEMENTS OF OPERATIONS YEARS ENDED DECEMBER

Years Ended December 31, 1997, 1998 AND 1999
1997 1998 1999 ----------- ----------- ----------- NET SALES................................................... $11,576,677 $18,935,440 $23,034,954 COST OF GOODS SOLD.......................................... 6,335,986 9,590,663 12,090,036 ----------- ----------- ----------- Gross profit............................................ 5,240,691 9,344,777 10,944,918 OPERATING EXPENSES: General and administrative................................ 2,444,398 2,795,199 3,771,663 Marketing and sales....................................... 3,967,574 5,364,953 7,759,997 Research and development.................................. 2,047,057 3,159,377 6,296,859 ----------- ----------- ----------- 8,459,029 11,319,529 17,828,519 ----------- ----------- ----------- LOSS FROM OPERATIONS........................................ (3,218,338) (1,974,752) (6,883,601) OTHER INCOME (EXPENSE): Interest expense, net of interest income of $53,527, $59,147 and $126,215 in 1997, 1998 and 1999, respectively............................................ (412,755) (516,366) (1,198,378) Other-net................................................. (14,634) (15,282) 366 ----------- ----------- ----------- (427,389) (531,648) (1,198,012) ----------- ----------- ----------- LOSS BEFORE INCOME TAXES.................................... (3,645,727) (2,506,400) (8,081,613) INCOME TAX EXPENSE (BENEFIT): Current................................................... (348,702) 19,993 (27,727) Deferred.................................................. (887,486) (950,000) 1,773,000 ----------- ----------- ----------- (1,236,188) (930,007) 1,745,273 ----------- ----------- ----------- NET LOSS.................................................... $(2,409,539) $(1,576,393) $(9,826,886) =========== =========== =========== BASIC AND DILUTED LOSS PER SHARE............................ $ (0.22) $ (0.13) $ (0.76) =========== =========== =========== BASIC AND DILUTED WEIGHTED AVERAGE SHARES OUTSTANDING....... 11,144,583 12,279,042 13,000,000 =========== =========== ===========
SEE NOTES TO CONSOLIDATED FINANCIAL STATEMENTS. F-12 2004, 2003 and 2002

(Dollars in thousands except per share data)

   2004

  2003

  2002

 

NET SALES

  $33,789  $33,866  $37,554 

COST OF GOODS SOLD

   24,596   24,315   19,569 
   


 


 


Gross profit

   9,193   9,551   17,985 

OPERATING EXPENSES:

             

Selling, general and administrative

   17,499   17,324   24,199 

Research and development

   6,685   9,305   12,201 

Restructuring charges (Note N)

   3,570   738   3,282 

Impairment charges (Note C)

   11,965   4,772   —   

Gain on sale of facility (Note M)

   (1,466)  —     —   
   


 


 


    38,253   32,139   39,682 

LOSS FROM OPERATIONS

   (29,060)  (22,588)  (21,697)

OTHER INCOME (EXPENSE):

             

Interest expense

   (2,383)  (315)  (62)

Loss on debt extinguishment

   (2,859)  —     —   

Other—net

   (164)  10   499 
   


 


 


    (5,406)  (305)  437 

LOSS BEFORE INCOME TAXES

   (34,466)  (22,893)  (21,260)

CURRENT INCOME TAX EXPENSE (BENEFIT)

   (94)  65   105 
   


 


 


NET LOSS

  $(34,372) $(22,958) $(21,365)
   


 


 


BASIC AND DILUTED LOSS PER SHARE

  $(1.19) $(0.94) $(0.91)

BASIC AND DILUTED WEIGHTED AVERAGE SHARES OUTSTANDING

   29,006,241   24,483,861   23,582,687 

See notes to consolidated financial statements.

TRANSGENOMIC, INC. AND SUBSIDIARIES

CONSOLIDATED STATEMENTS OF STOCKHOLDERS'STOCKHOLDERS’ EQUITY (DEFICIT) YEARS ENDED DECEMBER

Years Ended December 31, 1997, 1998 AND 1999
RETAINED ADDITIONAL EARNINGS COMMON PREFERRED PAID-IN NOTE UNEARNED (ACCUMULATED STOCK STOCK CAPITAL RECEIVABLE COMPENSATION DEFICIT) -------- --------- -------------- ----------- ------------ ------------ BALANCE, JANUARY 1, 1997........... $ 110 $ 41,000 $ 1,242,940 $ (650,782) $ -- $ 1,479,904 Net loss......................... -- -- -- -- -- (2,409,539) Other comprehensive income (loss): Foreign currency translation adjustment................... -- -- -- -- -- -- Comprehensive income (loss)..................... -- -- -- -- -- -- Note receivable from related party.......................... -- -- -- (369,062) -- -- Preferred stock dividends........ -- -- -- -- -- (11,161) Redeem 410 shares of preferred stock.......................... -- (41,000) -- -- -- -- 1,000 to 1 stock exchange........ 109,890 -- (109,890) -- -- -- Sale of 351,500 common shares.... 3,515 -- 1,620,354 -- -- -- Issuance of warrants to purchase 300,000 common shares.......... -- -- 82,117 -- -- -- -------- -------- -------------- ----------- --------- ------------ BALANCE, DECEMBER 31, 1997......... 113,515 -- 2,835,521 (1,019,844) -- (940,796) Net loss......................... -- -- -- -- -- (1,576,393) Other comprehensive income (loss): Foreign currency translation adjustment................... -- -- -- -- -- -- Comprehensive income (loss)..................... -- -- -- -- -- -- Note receivable from related party.......................... -- -- -- (66,087) -- -- Sale of 1,648,500 common shares......................... 16,485 -- 7,283,574 -- -- -- -------- -------- -------------- ----------- --------- ------------ BALANCE, DECEMBER 31, 1998......... 130,000 -- 10,119,095 (1,085,931) -- (2,517,189) Net loss......................... -- -- -- -- -- (9,826,886) Other comprehensive income (loss): Foreign currency translation adjustment................... -- -- -- -- -- -- Comprehensive income (loss)..................... -- -- -- -- -- -- Issuance of 22,500 stock options........................ -- -- 112,500 -- (112,500) -- Note receivable from related party.......................... -- -- -- 1,085,931 -- -- -------- -------- -------------- ----------- --------- ------------ BALANCE, DECEMBER 31, 1999......... $130,000 $ -- $ 10,231,595 $ -- $(112,500) $(12,344,075) ======== ======== ============== =========== ========= ============ ACCUMULATED OTHER COMPREHENSIVE INCOME (LOSS) TOTAL ------------- ----------- BALANCE, JANUARY 1, 1997........... $ 768 $ 2,113,940 Net loss......................... (2,409,539) (2,409,539) Other comprehensive income (loss): Foreign currency translation adjustment................... 1,348 1,348 ----------- Comprehensive income (loss)..................... (2,408,191) ----------- Note receivable from related party.......................... -- (369,062) Preferred stock dividends........ -- (11,161) Redeem 410 shares of preferred stock.......................... -- (41,000) 1,000 to 1 stock exchange........ -- -- Sale of 351,500 common shares.... -- 1,623,869 Issuance of warrants to purchase 300,000 common shares.......... -- 82,117 ----------- ----------- BALANCE, DECEMBER 31, 1997......... 2,116 990,512 Net loss......................... (1,576,393) (1,576,393) Other comprehensive income (loss): Foreign currency translation adjustment................... 1,018 1,018 ----------- Comprehensive income (loss)..................... (1,575,375) -- ----------- Note receivable from related party.......................... -- (66,087) Sale of 1,648,500 common shares......................... -- 7,300,059 ----------- ----------- BALANCE, DECEMBER 31, 1998......... 3,134 6,649,109 Net loss......................... (9,826,886) (9,826,886) Other comprehensive income (loss): Foreign currency translation adjustment................... (7,612) (7,612) ----------- Comprehensive income (loss)..................... (9,834,498) -- ----------- Issuance of 22,500 stock options........................ -- -- Note receivable from related party.......................... -- 1,085,931 ----------- ----------- BALANCE, DECEMBER 31, 1999......... $ (4,478) $(2,099,458) =========== ===========
SEE NOTES TO CONSOLIDATED FINANCIAL STATEMENTS. F-13 2004, 2003 and 2002

(Dollars in thousands except per share data)

   Common Stock

  Additional
Paid in
Capital


  Unearned
Compensation


  Accumulated
Deficit


  Accumulated
Other
Comprehensive
Income (Loss)


  Treasury
Stock


  Total

 
   Outstanding
Shares


  Par
Value


        

Balance, January 1, 2002

  23,606,003  $239  $113,260  $(158) $(28,406) $(81) $(2,750) $82,104 

Net loss

  —     —     —     —     (21,365)  (21,365)  —     (21,365)

Other comprehensive income (loss):

                                

Foreign currency translation adjustment

  —     —     —     —     —     493   —     493 

Unrealized gain on available for sale securities

  —     —     —     —     —     (34)  —     (34)
                      


        

Comprehensive loss

  —     —     —     —     —     (20,906)  —       

Issuance and exercise of stock options or warrants

  81,900   1   460   (51)          —     410 

Issuance of shares for employee stock purchase plan

  56,842   —     214   —     —     —     —     214 

Deferred compensation

  —     —     —     131   —     —     —     131 

Purchase of treasury stock

  (232,700)  —     —     —     —     —     (438)  (438)
   

 

  

  


 


 


 


 


Balance, December 31, 2002

  23,512,045   240   113,934   (78)  (49,771)  378   (3,188)  61,515 

Net loss

  —     —     —         (22,958)  (22,958)  —     (22,958)

Other comprehensive income (loss):

                          —       

Foreign currency translation adjustment

  —     —     —     —     —     1,219   —     1,219 
                      


        

Comprehensive loss

  —     —     —     —     —     (21,739)  —       

Issuance of stock options and warrants

  —     —     386   —     —     —     —     386 

Beneficial Conversion Premium

  —     —     480   —     —     —     —     480 

Issuance of shares

  4,500,000   45   969   —     —     —     3,188   4,202 

Issuance of shares for employee stock purchase plan

  107,077   1   135   —     —     —     —     136 

Amortization of unearned compensation

              78   —     —     —     78 
   

 

  

  


 


 


 


 


Balance, December 31, 2003

  28,119,122   286   115,904   —     (72,729)  1,597   —     45,058 

Net loss

  —     —     —     —     (34,372)  (34,372)      (34,372)

Other comprehensive income (loss):

                                

Foreign currency translation adjustment

  —     —     —     —     —     942   —     942 
                      


        

Comprehensive loss

  —     —     —     —     —     (33,430)  —       

Issuance of stock options and warrants

  —     —     189   —     —     —     —     189 

Beneficial Conversion Premium

  —     —     2,420   —     —     —     —     2,420 

Issuance of shares

  1,134,850   12   2,198   —     —     —     —     2,210 

Issuance of shares for employee stock purchase plan

  76,902   1   87   —     —     —     —     88 
   

 

  

  


 


 


 


 


Balance, December 31, 2004

  29,330,874  $299  $120,798  $—    $(107,101) $2,539  $—    $16,535 
   

 

  

  


 


 


 


 


See notes to consolidated financial statements.

TRANSGENOMIC, INC. AND SUBSIDIARIES

CONSOLIDATED STATEMENTS OF CASH FLOWS YEARS ENDED DECEMBER

Years Ended December 31, 1997, 1998 AND 1999
1997 1998 1999 ----------- ----------- ----------- CASH FLOWS FROM OPERATING ACTIVITIES: Net loss.................................................. $(2,409,539) $(1,576,393) $(9,826,886) Adjustments to reconcile net loss to net cash flows from operating activities: Depreciation and amortization........................... 918,214 798,708 1,364,246 Deferred income taxes................................... (887,486) (950,000) 1,773,000 Gain on sale of assets.................................. (72,250) (8,411) (16,105) Accrued interest and redemption premium................. -- -- 858,665 Amortization of deferred financing costs................ -- -- 149,960 Changes in operating assets and liabilities, net of acquisitions: Accounts receivable................................... 318,646 (2,029,247) (1,635,316) Inventories........................................... (174,192) (1,717,595) (1,775,273) Prepaid expenses and other current assets............. 52,704 (81,250) (233,686) Refundable income taxes............................... (54,000) 388,000 (62,000) Accounts payable...................................... (342,096) 1,392,087 481,068 Accrued expenses...................................... 39,600 340,178 178,793 ----------- ----------- ----------- Net cash flows from operating activities............ (2,610,399) (3,443,923) (8,743,534) CASH FLOWS FROM INVESTING ACTIVITIES: Purchase of property and equipment........................ (486,190) (682,674) (1,828,047) Proceeds from asset sales................................. 153,305 10,000 21,425 Increase in other assets.................................. (152,373) (813,405) (1,461,250) Purchase of business, net of cash acquired................ -- -- (187,294) Note receivable........................................... 15,560 22,946 -- ----------- ----------- ----------- Net cash flows from investing activities............ (469,698) (1,463,133) (3,455,166) CASH FLOWS FROM FINANCING ACTIVITIES: Issuance of common stock and common stock warrants........ 1,705,986 7,300,059 -- Net change in note payable-bank........................... 750,000 (800,000) 1,190,000 Proceeds from notes payable-other......................... 1,467,918 100,000 -- Payments on notes payable-other........................... (361,343) (1,964,555) (430,192) Proceeds from convertible notes payable................... -- -- 12,000,000 Deferred financing costs.................................. -- -- (587,615) Increase in related party receivables..................... (369,062) (66,087) -- ----------- ----------- ----------- Net cash flows from financing activities............ 3,193,499 4,569,417 12,172,193 EFFECT OF FOREIGN CURRENCY EXCHANGE RATE CHANGES ON CASH.... 1,348 1,018 (7,612) ----------- ----------- ----------- NET CHANGE IN CASH AND CASH EQUIVALENTS..................... 114,750 (336,621) (34,119) CASH AND CASH EQUIVALENTS AT BEGINNING OF YEAR.............. 409,326 524,076 187,455 ----------- ----------- ----------- CASH AND CASH EQUIVALENTS AT END OF YEAR.................... $ 524,076 $ 187,455 $ 153,336 =========== =========== =========== SUPPLEMENTAL DISCLOSURE OF CASH FLOW INFORMATION: Cash paid for interest.................................... $ 424,501 $ 472,579 $ 318,856 =========== =========== =========== Cash paid for taxes....................................... $ 17,026 $ 30,120 $ 37,630 =========== =========== ===========
SEE NOTES TO CONSOLIDATED FINANCIAL STATEMENTS. F-14 2004, 2003 and 2002

(Dollars in thousands except per share data)

   

2004

(as restated, see

Note P)


  

2003

(as restated, see
Note P)


  2002

 

CASH FLOWS FROM OPERATING ACTIVITIES:

             

Net loss

  $(34,372) $(22,958) $(21,365)

Adjustments to reconcile net loss to net cash flows from operating activities:

             

Depreciation and amortization

   4,625   4,597   3,993 

Non-cash restructuring charges (Note N)

   2,027   364   1,698 

Impairment charges (Note C)

   11,965   4,772   —   

Gain on sale of facility (Note M)

   (1,466)  —     —   

Non-cash financing costs

   1,642   —     —   

Loss on debt extinguishment

   2,859   —     —   

(Gain)/Loss on sale of securities

   128   (64)  —   

Other

   18   93   131 

Changes in operating assets and liabilities, net of acquisitions:

             

Purchase of trading securities

   —     (1,566)  —   

Proceeds from sale of trading securities

   —     1,519   —   

Accounts receivable

   (3,334)  342   794 

Inventories

   2,611   2,887   (5,767)

Prepaid expenses and other current assets

   (130)  334   527 

Accounts payable

   (268)  (1,509)  2,249 

Accrued expenses

   941   (1,828)  (204)
   


 


 


Net cash flows from operating activities

   (12,754)  (13,017)  (17,944)

CASH FLOWS FROM INVESTING ACTIVITIES:

             

Proceeds from the maturities and sale of available for sale securities

   4,269   4,000   39,355 

Purchases of available for sale securities

   —     —     (19,088)

Purchase of property and equipment

   (1,758)  (6,413)  (11,468)

Change in other assets

   522   (543)  (2,871)

Proceeds from sale of specialty oligonuceotide manufacturing facility (Note M)

   3,000   —     —   

Proceeds from asset sales

   —     9   —   
   


 


 


Net cash flows from investing activities

   6,033   (2,947)  5,928 

CASH FLOWS FROM FINANCING ACTIVITIES:

             

Net change in line of credit

   4,956   2,992   —   

Proceeds from long-term debt

   2,750   —     1,559 

Payments on long-term debt

   (1,779)  (35)  —   

Issuance of common stock, net of expenses

   71   4,338   624 

Purchase of treasury stock

   —     —     (438)
   


 


 


Net cash flows from financing activities

   5,998   7,295   1,745 

EFFECT OF FOREIGN CURRENCY EXCHANGE RATE CHANGES ON CASH

   484   175   393 
   


 


 


NET CHANGE IN CASH AND CASH EQUIVALENTS

   (239)  (8,494)  (9,878)

CASH AND CASH EQUIVALENTS AT BEGINNING OF YEAR

   1,241   9,735   19,613 
   


 


 


CASH AND CASH EQUIVALENTS AT END OF YEAR

  $1,002  $1,241  $9,735 
   


 


 


SUPPLEMENTAL CASH FLOW INFORMATION

             

Cash paid during the year for:

             

Interest

  $560  $314  $30 

Income taxes, net

   (94)  70   120 

Non-cash transactions:

             

Available for sale securities acquired for goods and services

   4,397   277   —   

Conversions of debt to equity

   2,226   —     —   

See notes to consolidated financial statements.

TRANSGENOMIC, INC. AND SUBSIDIARIES

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS YEARS ENDED DECEMBER

Years Ended December 31, 1997, 1998 AND 1999 2004, 2003 and 2002

(Dollars in thousands except per share data)

A. SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES BUSINESS DESCRIPTION.

Business Description.

Transgenomic, Inc., a Delaware corporation, and its subsidiaries (the "Company"“Company”) provide innovative research toolsproducts and services for the synthesis, purification and analysis of nucleic acids. The Company’s products and services include automated instrument systems, associated consumables, nucleic acid chemical building blocks, nucleic acid synthesis products, novel chemistry development for nucleic acids, and genetic variation discovery services. The Company develops, assembles, manufactures and markets its products and services to the life sciences industry. These tools enable researchersindustry to discoverbe used in research focused on molecular genetics of humans and understand variationother organisms. Such research could lead to development of new diagnostics and therapeutics. The Company’s business plan is to participate in the human genetic code, or genome,value chain associated with these activities by providing key technology, tools, consumables, biochemical reagents and services to those entities engaged in order to acceleratebasic biomedical research and improve drugthe development of diagnostics and diagnostics. therapeutic agents.

The Company also manufacturesoperates in two reportable segments, BioSystems and designs sample preparationNucleic Acids. The BioSystems operating segment generates revenue from the sale of automated instrument systems and monitoring instruments, which are primarily used with various typesassociated consumable products and services. The Nucleic Acids operating segment generates revenue from the sale of opticalnucleic acid-based products and mass spectrometers to analyze the chemical makeup of samples. services.

The Company markets and sells these platformsproducts primarily throughoutthrough a direct sales and support group in North America and Europe and through a network of distributors in the Pacific Rim. PRINCIPLES OF CONSOLIDATION. Rim and other international markets. These sales efforts are directed from the Company headquarters in Omaha, Nebraska and through a series of sales and support offices strategically located throughout the United States, Europe and Japan.

The Company has experienced recurring net losses and had an accumulated deficit of $107,101 at December 31, 2004. Based on the Company’s 2005 operating plan, management believes its existing sources of liquidity will be sufficient to meet its cash needs during 2005. If necessary, the Company’s management believes they can manage costs and expenses at reduced levels to conserve working capital. The need for any such cost and expense reductions during 2005 would likely delay implementation of the Company’s business plan. Additionally, management may pursue additional financing alternatives. Ultimately, the Company must achieve sufficient revenue levels to support its cost structure.

Principles of Consolidation.

The consolidated financial statements include the accounts of Transgenomic, Inc. and its wholly-owned subsidiaries Transgenomic, Ltd. (fka CETAC Technologies, Ltd.), which provides sales and customer support outside the United States and Transgenomic St. Thomas, Inc., which is organized as a foreign sales corporation.subsidiaries. All material intercompany balances and transactions have been eliminated. On July 1, 1997 the Company merged with CETAC Holding Company, Inc.eliminated in a 1000 to 1 stock exchange. Beforeconsolidation.

Cash and after the merger, the companies had identical ownership structures. Accordingly, this transaction was between companies under common control and was accounted for similar to a pooling of interests. The Company had no assets, liabilities or operations prior to its merger with CETAC Holding Company, Inc. SALES AND DISTRIBUTION STRATEGY. The Company sells its products in three major ways: 1) DIRECT-The Company serves the United States market through direct sales efforts from the Company headquarters in Omaha. The Company has direct salespeople strategically located to cover all sections of the United States and Europe. 2) DISTRIBUTORS-The Company also sells its products to distributors in its major European and Pacific Rim markets. 3) ORIGINAL EQUIPMENT MANUFACTURERS (OEM)-The Company sells its sample preparation and monitoring instruments to major ICP (intra-coupled plasma) spectrometer manufacturers and their authorized representatives. The Company has sales offices in the United States, United Kingdom and Japan. These offices function mainly as service and support centers and also as sales resources for OEM and distributor customers in Europe. CASH AND CASH EQUIVALENTS. Cash Equivalents.

For purposes of reporting cash flows, cash and cash equivalents include cash and temporary investments with original maturities at acquisition of three months or less. F-15

Short Term Investments.

The Company classifies all of its short-term investments with maturities at acquisition of greater than three months as available for sale securities. Such short-term investments consist primarily of United States government and federal agency securities, corporate commercial paper and corporate debt that are stated at market value, with unrealized gains and losses on such securities reflected, net of tax, as other comprehensive income in stockholders’ equity. Realized gains and losses on short term investments are included in earnings and are derived using the specific identification method for determining the cost of securities. It is the Company’s intent to maintain a liquid portfolio to take advantage of investment opportunities; therefore, all securities are considered to be available for sale and are classified as current assets.

During 2003 and 2004, the Company accepted common stock from one of its customers (Geron Corporation) as payment for goods and services. These shares were classified as available-for-sale securities. Net losses on these securities of $128 during 2004 and net gains of $111 during 2003 were reflected as other expense on the consolidated statement of operations. Proceeds from the sales of these available for sale securities were reflected within net cash flows from investing activities.

TRANSGENOMIC, INC. AND SUBSIDIARIES

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS YEARS ENDED DECEMBER– (Continued)

Years Ended December 31, 1997, 1998 AND 1999 (CONTINUED) A. SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES (CONTINUED) ACCOUNTS RECEIVABLE. 2004, 2003 and 2002

(Dollars in thousands except per share data)

Accounts Receivable.

Accounts receivable are shown net of allowance for doubtful accounts. The following is a summary of activity for the allowance for doubtful accounts during each of $561,645 and $160,593 in 1998 and 1999, respectively. Paymentthe three years ended December 31, 2004:

   Beginning
Balance


  Additional
Charges
to Income


  Deductions
from
Reserve


  Ending
Balance


Year Ended December 31, 2004

  $549  $534  $32  $1,051

Year Ended December 31, 2003

  $450  $174  $75  $549

Year Ended December 31, 2002

  $213  $418  $181  $450

While payment terms are generally are 30 or 60 days. Thedays, the Company has also provided extended payment terms of up to some of its customers. Accounts receivable balances subject to extended terms were approximately $59,000 as of December 31, 1998 and $216,000 as of December 31, 1999. Balances due more than one year from the balance sheet date were approximately $0 and $77,000, respectively. INVENTORIES. 90 days in certain cases.

Inventories.

Inventories are stated at the lower of cost (first-in, first-out method) or market. The Company has certainCost is computed using standard costs for finished goods inventory it provides as demonstration units to potential customersand average or latest actual cost for evaluation, as well as to certain universitiesraw materials and original equipment manufacturers for testingwork in process.

Property and demonstration. All demonstration units are held for resale and included in inventory at the lower of cost or market. Demonstration inventory that is greater than one year old and remains held for resale is reclassified from current assets to long-term assets and carried at the lower of cost or market. If the instrument is not purchased by the customer or institution, it is retrieved, and, if necessary, reconditioned for sale. Demonstration inventory is evaluated for impairment based on its physical condition and technological status. No impairment loss has been recognized to date. At the time these instruments no longer are held for resale and will be used for in-house testing and analysis, they are transferred from inventory to property at the lower of cost or market and depreciated. Demonstration equipment included in property and equipment is used for research and development and training. PROPERTY AND EQUIPMENT. Equipment.

Property and equipment are carried at cost. Depreciation and amortization areis computed by the straight-line and accelerated methodsmethod over the estimated useful lives of the related assets as follows:

Buildings

15 years

Leasehold improvements

3 to 7 years

Furniture and fixtures...................................... fixtures

5 to 7 years

Production equipment........................................ equipment

5 to 7 years

Computer equipment.......................................... 5 years Research and development equipment.......................... equipment

3 to 5 years Demonstration equipment.....................................

Research and development equipment

3 to 5 years

Demonstration equipment

3 to 5 years

GOODWILL.

Depreciation of property and equipment totaled $4,009, $3,983 and $3,993 in 2004, 2003 and 2002, respectively.

Goodwill arising from the excessand other Intangible Assets

The Company adopted Statement of cost overFinancial Accounting Standards (“SFAS”) No. 142,Goodwill and Other Intangible Assets,beginning on January 1, 2002. SFAS No. 142 provides that goodwill and other intangible assets with indefinite lives will not be amortized, but will be tested for impairment annually. Impairment occurs when the fair value of net assets at dates of acquisitionthe asset is being amortized usingless than its carrying amount. If impaired, the straight-line method over 15 years. IMPAIRMENT OF LONG-LIVED ASSETS. The Company assesses the recoverability of long-lived assets held for use, including certainasset’s carrying value is reduced to its fair value. Identifiable intangible assets with definite lives are amortized over their estimated useful lives and goodwill, whenevertested for impairment as events or changes in circumstances indicate that the carrying amount of anthe asset may not be recoverable. In such cases, if the sum of the expected cash flows (undiscounted and without interest) resulting from the use of the asset are less thanimpaired. Impairment occurs when the carrying F-16 TRANSGENOMIC, INC. AND SUBSIDIARIES NOTES TO CONSOLIDATED FINANCIAL STATEMENTS YEARS ENDED DECEMBER 31, 1997, 1998 AND 1999 (CONTINUED) A. SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES (CONTINUED) amount, an impairment lossvalue is recognized based on the difference between the carrying amountnot recoverable and the fair value of the assets. No impairmentasset is less than the carrying value.

The Company has not amortized goodwill for any period presented. Accordingly, there are no differences between reported net loss has been recognizedand loss per share related to date. OTHER ASSETS. goodwill amortization.

Other Assets.

Other assets include long-term inventory, patents, intellectual property, deferred financing costs and capitalized software and intellectual property.development costs. The Company capitalizes the external and in-house legal costs and filing fees associated with obtaining patents on its new discoveries and amortizes these costs using the straight-line method over the shorter of the legal life of the patent or its

TRANSGENOMIC, INC. AND SUBSIDIARIES

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS – (Continued)

Years Ended December 31, 2004, 2003 and 2002

(Dollars in thousands except per share data)

economic life, generally 17 years, beginning on the date the patent is issued. The Company develops software as an integral component of its instruments. The Company capitalizescapitalized software development costs which include purchased software and direct labor, after technological feasibilityfor products offered for sale in accordance with SFAS No. 86,Accounting for the software has been established. AfterCosts of Computer Software to be Sold, Leased or Otherwise Marketed. This Standard allows for the software is ready for general release, the Company ceases capitalization of certain development costs once a software development costs. The software is amortized over the estimated life of the product generally three years. Intellectual property, which is purchased technology, is recorded at costhas reached technological feasibility. Development costs capitalized totaled $0 in 2004 and is amortized over its estimated useful life of between 52003 and 10 years. DEFERRED FINANCING COSTS. Deferred financing costs are amortized over the term of the related financing using the effective interest method. STOCK BASED COMPENSATION. $1,127 in 2002.

Stock Based Compensation.

The Company accounts for its employee stock option grants under the provisions of Accounting Principles Board Opinion No. 25, ACCOUNTING FOR STOCK ISSUED TO EMPLOYEES,Accounting for Stock Issued to Employees, which utilizes the intrinsic value method. Accordingly, compensation cost for stock options is measured as the excess, if any, of the deemed fair market value of the Company'sCompany’s common stock at the date of grant over the stock option exercise price. Stock option grants to nonemployeesnon-employees are accounted for using the fair value method of accounting in accordance with Statement of Financial Accounting StandardsSFAS No. 123, ACCOUNTING FOR STOCK-BASED COMPENSATIONAccounting for Stock-Based Compensation, using the Black-Scholes modelmodel.

The following table illustrates the effect on net loss and volatility factors for comparable public companies. UNEARNED COMPENSATION. Unearned compensation representsloss per share if the unamortized difference betweenCompany had applied the option exercise price and the deemed fair market value recognition provisions of the Company's commonSFAS No. 123 to stock at the option grant date, for options issued under the Company's Stock Option Plan (Note L). The unearned compensation is charged to operations over the vesting period of the respective options. INCOME TAXES. based employee compensation.

   2004

  2003

  2002

 

Net Loss:

             

As reported

  $(34,372) $(22,958) $(21,365)

Pro forma

  $(35,432) $(24,794)  (23,274)

Basic and diluted loss per share:

             

As reported

   (1.19)  (0.94)  (0.91)

Pro forma

   (1.22)  (1.01)  (0.99)

Income Taxes.

Deferred tax assets and liabilities are determined based on the differences between the financial reporting and tax basesbasis of assets and liabilities at each balance sheet date using enacted tax rates expected to be in effect in the year the differences are expected to reverse. F-17 TRANSGENOMIC, INC. AND SUBSIDIARIES NOTES TO CONSOLIDATED FINANCIAL STATEMENTS YEARS ENDED DECEMBER 31, 1997, 1998 AND 1999 (CONTINUED) A. SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES (CONTINUED) REVENUE RECOGNITION. SalesDeferred tax assets are reduced by a valuation allowance to the extent that it is unlikely they will be realized.

Revenue Recognition.

Revenue on the sales of products are recordedis recognized in accordance with the terms of the sales arrangement. Such recognition is based on receipt of an unconditional customer order and transfer of title and risk of ownership to the customer, typically upon shipment of the product. The Company'sOur sales terms do not provide for the right of return unless the product is damaged or defective. Installation and training revenues areRevenues from certain services associated with our analytical instruments, to be performed subsequent to shipment of the products, is deferred and recognized when earned. RESEARCH AND DEVELOPMENT. the services are provided. Such services, mainly limited to installation and training services that are not essential to the functionality of the instruments, typically are performed in a timely manner subsequent to shipment of the instrument. The Company also enters into various service contracts that cover installed WAVE systems. These contracts cover specific time periods and revenue associated with these contracts is deferred and recognized over the service period. At December 31, 2004 and 2003, deferred revenue, mainly associated with the Company’s service contracts, included on the Company’s balance sheet was approximately $1,478 and $1,792 respectively.

Research and Development.

Research and development costs are charged to expense when incurred. TRANSLATION OF FOREIGN CURRENCY.

Translation of Foreign Currency.

Financial statements of subsidiaries outside the U.S. are measured using the local currency as the functional currency. The adjustments to translate those amounts into U.S. dollars are accumulated in a separate account in stockholders'stockholders’ equity and are included in other comprehensive income. Foreign currency transaction gains or losses resulting from changes in currency exchange rates are

TRANSGENOMIC, INC. AND SUBSIDIARIES

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS – (Continued)

Years Ended December 31, 2004, 2003 and 2002

(Dollars in thousands except per share data)

included in the determination of net income. For the periods presented, foreignForeign currency transaction adjustments were not significant. COMPREHENSIVE INCOME. decreased net loss approximately $328 in 2004 and $1,089 in 2003 and 2002.

Comprehensive Income.

Accumulated other comprehensive income for all periods presented consistsat December 31, 2004 and 2003 consisted of net income and foreign currency translation adjustments.adjustments, net of applicable tax of $0. For all previous periods presented, accumulated other comprehensive income consists of foreign currency translation adjustments and unrealized gains or losses on available for sale investments, net of applicable tax of $0. The Company deems its foreign investments to be permanent in nature and does not provide for taxes on currency translation adjustments arising from converting its investments in a foreign currency to U.S. dollars. There were no reclassification adjustments to be reported in the periods presented. FAIR VALUE OF FINANCIAL INSTRUMENTS.

Fair Value of Financial Instruments.

The estimated fair valuecarrying amount of the Company’s cash and cash equivalents, receivables, accounts payable and accrued expenses approximate fair value because of the short maturity of those instruments. The Company derives the fair value of its short-term and long-term notes payable approximate the carrying values.investments based on quoted market prices. The carrying value of receivableslong-term debt and accounts payable approximatethe line of credit approximates fair value based on their short-term nature. The estimated fair value amountsupon existing interest rates available to the Company for short-term and long-term debt were determined using rates that are currently available for issuances of debt with similar terms and maturities. EARNINGS PER SHARE. debt.

Earnings Per Share.

Basic earnings per share are calculated based on the weighted-average number of common shares outstanding during each period. Diluted earnings per share include shares issuable upon exercise of outstanding stock options and warrants or conversion of convertible notes, where dilutive. Potentially dilutive securities totaling 13,484,072, 7,671,771 and 5,158,672 in 2004, 2003 and 2002, respectively, have been excluded from the computation of diluted earnings per share as they have an antidilutive effect due to the Company'sCompany’s net loss. Weighted-average shares outstanding reflects the 1,000 to 1 stock exchange which occurred on July 1, 1997, in connection with the merger of Transgenomic, Inc. and CETAC Holding Company, as if such exchange occurred at the beginning of the earliest period presented. F-18 TRANSGENOMIC, INC. AND SUBSIDIARIES NOTES TO CONSOLIDATED FINANCIAL STATEMENTS YEARS ENDED DECEMBER 31, 1997, 1998 AND 1999 (CONTINUED) A. SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES (CONTINUED) ACCOUNTING PRONOUNCEMENTS. In June 1998,

Recently Issued Accounting Pronouncements

On December 16, 2004, the Financial Accounting Standards Board (FASB) issued Statement of Financial Accounting Standards No. 133, ACCOUNTING FOR DERIVATIVE INSTRUMENTS AND HEDGING ACTIVITIES, (SFAS No. 133). This statement, which is effective for fiscal years beginning after June 15, 2000, requires the recognition of all derivative financial instruments as either assets or liabilities in the statement of financial position and measurement of those instruments at fair value. Management is in the process of determining the effect, if any, SFAS No. 133 will have on the Company's financial statements. In 1999, the Company adopted Statement of Position 98-1, ACCOUNTING FOR THE COSTS OF COMPUTER SOFTWARE DEVELOPED OR OBTAINED FOR INTERNAL USE, (SOP 98-1) which, on a prospective basis, revised123R, Share-Based Payment. SFAS No.123R addresses the accounting for software development costs. SOP 98-1share-based payment transactions in which an enterprise receives employee services in exchange for (a) equity instruments of the enterprise or (b) liabilities that are based on the fair value of the enterprise’s equity instruments or that may be settled by the issuance of such equity instruments. SFAS No. 123R eliminates the ability to account for share-based compensation transactions using Accounting Principles Board Opinion No. 25 and generally requires that such transactions be accounted for using a fair-value-based method. The Company expects to adopt this standard on January 1, 2006. The Company is currently assessing the capitalization of certain costs related to internal use software once certain criteria have been met. The adoptionfinal impact of this statement did not have astandard on its financial position, results of operations or cash flows. This assessment includes evaluating option valuation methodologies and assumptions as well as potential changes to compensation strategies.

On November 24, 2004, the FASB issued SFAS No. 151, Inventory Costs – an amendment of ARB No. 43. SFAS No. 151 requires idle facility expenses, freight, handling costs, and wasted material impact(spoilage) costs to be excluded from the cost of inventory and expensed when incurred. It also requires that allocation of fixed production overheads to the costs of conversion be based on the Company'snormal capacity of the production facilities. SFAS No. 151 will be effective at the beginning of 2006. The Company is currently assessing the final impact of this standard on its financial statements. USE OF ESTIMATES. position, results of operations or cash flows.

Use of Estimates.

The preparation of consolidated financial statements in conformity with accounting principles generally accepted accounting principlesin the United States of America requires management to make estimates and assumptions that affect the reported amounts of assets and liabilities and disclosure of contingent assets and liabilities at the date of the financial statements and the reported amounts of revenues and expenses during the reporting period. Actual results could differ from those estimates. RECLASSIFICATIONS. Certain reclassifications have been made to the 1997 and 1998 financial statements to conform with the 1999 presentation.

B. ACQUISITION On January 26, 1999, the Company, through its UK subsidiary, acquired substantially all of the assets of Kramel Biotech International, Limited (Kramel) for approximately $187,000 in cash and the assumption of approximately $135,000 in liabilities of Kramel, and entered into employment agreements with the two principals. Kramel manufactures laboratory consumables used in the field of molecular biology. The acquisition was accounted for as a purchase and resulted in goodwill of approximately $66,000. All identifiable assets acquired and liabilities assumed were allocated a portion of the cost, equal to their fair values. Kramel's results of operations have been included in the accompanying statements of operations subsequent to the date of acquisition. F-19 INVENTORIES

TRANSGENOMIC, INC. AND SUBSIDIARIES

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS YEARS ENDED DECEMBER– (Continued)

Years Ended December 31, 1997, 1998 AND 1999 (CONTINUED) 2004, 2003 and 2002

(Dollars in thousands except per share data)

Inventories consisted of the following at December 31:

   Biosystems
Operating
Segment


  Nucleic Acids
Operating
Segment


  Total

   2004

  2003

  2004

  2003

  2004

  2003

Finished goods

  $2,637  $2,875  $2,380  $2,247  $5,017  $5,122

Raw materials and work in process

   780   1,223   2,275   3,851   3,055   5,074

Demonstration inventory

   153   388   —     —     153   388
   

  

  

  

  

  

    3,570   4,486   4,655   6,098   8,225   10,584

Less inventory classified as a long-term asset

   —     —     2,859   —     2,859   —  
   

  

  

  

  

  

Net Inventory

  $3,570  $4,486  $1,796  $6,098  $5,366  $10,584
   

  

  

  

  

  

The Nucleic Acids operating segment inventory at December 31, 2004 and 2003 consisted primarily of phosphoramadites and the raw materials to produce phosphoramadites which are used and produced at the Company’s facility in Glasgow, Scotland. As of December 31, 2004, the Company has classified a portion of this inventory as a long-term other asset based on its existing sales forecasts for these products.

The Company periodically evaluates its inventory of chemical building blocks to determine whether they continue to meet quality and other specifications and over what time period such products are expected to be sold. Product that does not meet quality and other specifications can generally be re-worked to enhance purity. Costs to purify such product and related yield losses are expensed as incurred.

C. INVENTORIES GOODWILL

At December 31, 19982004 and 1999 inventories2003, goodwill by operating segment consist of the following:
1998 1999 ---------- ---------- Finished goods....................................... $ 257,173 $ 157,216 Raw materials and work in process.................... 2,295,336 2,786,958 Demonstration inventory.............................. 1,631,000 3,098,851 ---------- ---------- 4,183,509 6,043,025 Less long-term demonstration inventory............... (819,538) (2,124,159) ---------- ---------- $3,363,971 $3,918,866 ========== ==========
During 1997, 1998

   Biosystems
Operating
Segment


  Nucleic Acids
Operating
Segment


  Total

 

Net balance December 31, 2002

  $638  $14,637  $15,275 

Goodwill impairment charge

   —     (4,772)  (4,772)
   

  


 


Net balance December 31, 2003

   638   9,865   10,503 

Goodwill impairment charge

   —     (9,865)  (9,865)
   

  


 


Net Balance December 31, 2004

  $638  $0  $638 
   

  


 


The Company recorded charges of $9,865 and 1999,$4,772 during 2004 and 2003, respectively, related to the impairment of goodwill associated with the Nucleic Acids operating segment. In each case, the amount of the impairment charge was based, in part, on independent valuations performed by the same unaffiliated valuation firm. The 2003 charge resulted from the Company’s annual impairment test that was performed in the fourth quarter of 2003. The 2004 charge resulted from an interim period impairment test performed during the second quarter of 2004.

The interim period impairment test became necessary after the Company’s Board of Directors directed management during the second quarter of 2004 to explore strategic alternatives for the Nucleic Acids operating segment. This process included significant due diligence by management, third-party advisors and prospective independent buyers and other interested parties. Information obtained through this process indicated that it was more likely than not that the assets associated with the Nucleic Acids operating segment were impaired.

The Company reclassified demonstration inventoryalso recorded a charge of $22,914, $9,096 and $41,090, respectively,$2,100 during the second quarter of 2004 related to the impairment of property and equipment. equipment associated with the Nucleic Acids operating segment.

D. OTHER ASSETS

At December 31, 19982004 and 1999,2003, finite lived intangible assets and other assets consistconsisted of the following:
1998 1999 ------------------------------------- ------------------------------------- ACCUMULATED NET BOOK ACCUMULATED NET BOOK COST RESERVE VALUE COST RESERVE VALUE ---------- ----------- ---------- ---------- ----------- ---------- Deferred income taxes.......... $1,839,000 $ -- $1,839,000 $ 180,000 $ -- $ 180,000 Goodwill....................... 843,446 235,435 608,011 909,492 306,463 603,029 Intellectual property.......... 534,852 160,455 374,397 2,534,852 447,273 2,087,579 Patents........................ 815,934 8,010 807,924 1,076,384 21,107 1,055,277 Software....................... 369,678 118,558 251,120 503,730 227,079 276,651 Other.......................... 309,103 101,615 207,488 160,954 -- 160,954 ---------- -------- ---------- ---------- ---------- ---------- Total...................... $4,712,013 $624,073 $4,087,940 $5,365,412 $1,001,922 $4,363,490 ========== ======== ========== ========== ========== ==========
E. NOTE PAYABLE-BANK At December 31, 1998 and 1999, note payable-bank consisted of borrowings in the amounts of $3,150,000 and $4,340,000, respectively, against a revolving line of credit of $5,000,000. The note carries an interest rate equal to the national prime. The interest is payable monthly. The interest rate at December 31, 1998 and 1999 was 7.75% and 8.50%, respectively. The line matures July 31, 2000. Substantially all of the Company's assets and certain life insurance policies are pledged as collateral on this note payable. The loan contains certain restrictive covenants that the Company must comply with on a quarterly basis. Such covenants include a prohibition on the payment of dividends, the purchase of its stock, and the redemption of stock options and warrants, among other things, without the written agreement of the lender. As of December 31, 1999, the Company was not in compliance with these covenants. However, a waiver was obtained from the bank for the covenant violations as of December 31, 1999, which is effective until March 31, 2000. The financial covenants for which the Company was not in compliance were as follows: to maintain no less than $8.25 million of tangible net worth; to maintain a maximum debt to tangible net worth ratio of not more than 1.2 to 1; to maintain a F-20

TRANSGENOMIC, INC. AND SUBSIDIARIES

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS YEARS ENDED DECEMBER– (Continued)

Years Ended December 31, 1997, 1998 AND 1999 (CONTINUED) 2004, 2003 and 2002

(Dollars in thousands except per share data)

   2004

  2003

   Cost

  Accumulated
Reserve


  Net
Book
Value


  Cost

  Accumulated
Reserve


  Net
Book
Value


Capitalized software

  $2,132  $1,468  $664  $2,132  $758  $1,374

Intellectual property

   765   476   289   765   165   600

Patents

   1,071   194   877   1,035   170   865

Deferred Financing Costs

   576   183   393   409   —     409

Long Term Inventory

   4,797   1,938   2,859   —     —     —  

Other

   452   147   305   656   183   473
   

  

  

  

  

  

Total

  $9,793  $4,406  $5,387  $4,997  $1,276  $3,721
   

  

  

  

  

  

Amortization expense for intangible assets was $1,197, $825 and $150 during 2004, 2003 and 2002, respectively. Amortization expense for intangible assets is expected to be approximately $1,009 in 2005, $342 in 2006, $320 in 2007, $62 in 2008 and $130 in 2009.

E. NOTE PAYABLE-BANK (CONTINUED)DEBT

Debt consisted of the following at December 31:

   2004

  2003

 

Credit Line

         

Gross amount due (2% above prime, due December 2006)

  $5,948  $2,992 

Debt premium

   1,004   —   

Debt discount – warrants

   (85)  (370)

Debt discount – beneficial conversion premium

   (353)  (480)
   


 


   $6,514  $2,142 
   


 


Long-Term Debt

         

Convertible debt (2% above prime, due February 2007)

  $2,550  $—   

Debt Premium

   474   —   

Mortgage debt

   —     1,693 

Less current portion

   (825)  (1,693)
   


 


   $2,199  $—   
   


 


In December 2003, the Company entered into a $7,500 line of credit (the “Credit Line”) with Laurus Master Fund, Ltd. (“Laurus”). The term of the Credit Line is three years carrying an interest rate of 2.0% over the prime rate or a minimum working capital of $4.25 million; and to restrict the purchase or lease of fixed assets to an amount that does not exceed the depreciation taken in the Company's fiscal year. F. NOTES PAYABLE-OTHER Notes payable-other6.0% (7.25% at December 31, 1998 and 1999 consists2004). Funds available under the Credit Line are determined by a borrowing base equal to 90% of eligible accounts receivable balances plus up to $1,000 related to inventory balances. The Credit Line is secured by most of the following:
1998 1999 ---------- -------- Installment note payable to a bank maturing on December 1, 2000; payable in monthly installments of $15,618, which includes interest of 9.0%; collateralized by all equipment and furnishings..... $ 342,194 $179,711 Installment note payable to a bank maturing on August 13, 2001; payable in monthly installments of $15,123 which includes interest of 9.0%; collateralized by all equipment and furnishings....................... 429,516 280,436 Note payable to a living trust, payable in monthly installments of $11,000 including interest at 5.33% per year, due March 1, 2000 secured by certain assets of the Company's California division......... 355,164 236,535 ---------- -------- Total notes payable-other............................. 1,126,874 696,682 Less current portion.................................. 432,338 579,724 ---------- -------- Notes payable-other excluding current portion......... $ 694,536 $116,958 ========== ========
Aggregate maturitiesCompany’s assets. Prior to amendments to the Credit Line discussed below, payment of notes payable-otherinterest and principal could, under certain circumstances, be made with shares of the Company’s common stock at a fixed conversion price of $2.20 per share. Conversion of this debt to common stock may be made at the election of Laurus or the Company. The Company could elect to convert only if its shares trade at a price exceeding $2.42 per share for ten consecutive trading days, and such conversion is further subject to trading volume limitations and a limitation on the total beneficial ownership by Laurus of the Company’s common stock. Upon entering into the Credit Line, the Company issued warrants to Laurus to acquire 550,000 shares of the Company’s common stock at an exercise price exceeding the average trading price of the Company’s common stock over the ten trading days prior to the date of the warrant. The amount available under the Credit Line at December 31, 1999 consist2004 and 2003 was $1,552 and $4,508, respectively.

In February 2004, the Company entered into a separate $2,750 convertible note with Laurus (the “Term Note”). The Term Note carries an interest rate of 2.0% over the prime rate or a minimum of 6.0% (7.25% at December 31, 2004) and has a term of 3 years. Prior to amendments to the Term Note discussed below, the principal and interest on the Term Note could be converted into common stock of the following: YEAR ENDING DECEMBER 31, 2000........................................................ $579,724 2001........................................................ 116,958 -------- $696,682 ========
In connection with certain installment notes payable toCompany at a bank,fixed conversion price of $2.61 per share. Upon entering the Term Note, the Company must comply with certain restrictive covenants on an annual basis. Asissued warrants to Laurus to acquire 125,000 shares of December 31, 1999,its common stock. Borrowings under the Company was not in compliance with these covenants. However, a waiver was obtained fromTerm Note were primarily used to retire the bank for the covenant violations as of December 31, 1999, which is effective until December 31, 2000. The financial covenants for which the Company was not in compliance were as follows: to make no payments to subsidiaries; to maintain debt service coverage, defined as net profit plus depreciation, of at least $470,000; and to not incur an operating loss. G. CONVERTIBLE NOTES PAYABLE On March 23, 1999, the Company received approximately $11.4 million of net proceeds from the placement of $12 million aggregate principal amount 6% convertible notes due March 25, 2002. Interest on the notes compounds at 6% per annum until maturity or a Designated Offering (as F-21 mortgage

TRANSGENOMIC, INC. AND SUBSIDIARIES

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS YEARS ENDED DECEMBER– (Continued)

Years Ended December 31, 1997, 1998 AND 1999 (CONTINUED) G. CONVERTIBLE NOTES PAYABLE (CONTINUED) defined) ("Offering"2004, 2003 and 2002

(Dollars in thousands except per share data)

debt on the Company’s Glasgow facility. Remaining borrowings of approximately $750 were used to complete the build-out of the Glasgow facility, complete the consolidation the Company’s Glasgow operations into the new facility and provide funds for operations.

Certain features of the Credit Line and Term Note (collectively, the “Laurus Loans”) require the Company to separately account for the value of certain amounts related to the warrants issued and eitherthe conversion feature of the Laurus Loans. Specifically, Emerging Issues Task Force (“EITF”) No. 00-27,Application of Issue No. 98-5 to Certain Convertible Instruments, requires the Company to separately value the warrants issued and the “beneficial conversion premium” related to the Laurus Loans. Any borrowings under the Credit Line may result in additional beneficial conversion premiums. The values of the warrants and the beneficial conversion premium have been recorded on the balance sheet as a debt discount and an increase to additional paid in capital. The debt discount recorded for these items will be payable in cash upon repaymentamortized as expense to the income statement over the terms of the note atLaurus Loans or afteras the maturity date,warrants are exercised or if elected upon the completion of an Offering all accrued and unpaid interest shall bedebt is converted into common stock thereby increasing the effective interest rate on the Laurus Loans. In January and February 2004, Laurus exercised its conversion rights on the Credit Line and converted $2,000 of amounts outstanding on the Credit Line into approximately 910,000 shares of common stock. The interest after an Offering shall be reduced to 3.6%, and shall become due for the remainderstock of the termCompany. In connection with this conversion, the Company accelerated the amortization of approximately $480 of the beneficial conversion premium.

In February 2004, Laurus waived the borrowing base limitation on the Credit Line, thereby making the full $7,500 facility available to the Company regardless of the available collateral. On August 31, 2004, Laurus agreed to extend the borrowing base waiver on the Credit Line through the maturity date at the time of an Offering. The holder shall have the right to convert the principal amountsMarch 19, 2005. In addition, Laurus deferred certain payments due under these notes into sharesthe Term Note and reduced the interest rate on both of the Company'sLaurus Loans to 0% for any day the closing sale price of the Company’s common stock is at any time. Ifor above $1.75 per share. In return, the Company completes an Offering prior to September 25, 2000,lowered the conversion price shall be either the lesser of $5.00 per share or 50%on each of the per share offering price. If the Offering is completed between September 25, 2000 and the maturity date, the conversion price shall be the lesser of $5.00 per share, or between 35% and 50% of the per share offering priceLaurus Loans to the public, calculated on a declining straight-line basis, through the day on which an offering is completed. If an Offering is not completed before the maturity date, the holder may elect to convert at $5.00 per share but the price will be adjusted to 35% of the Offering price if less than $5.00$1.00 per share and issued a warrant to Laurus covering an additional 400,000 common shares if any, will be issued to reduceat an exercise price of $1.25 per share. The closing price of the conversion price toCompany’s common stock on August 31, 2004 was $1.20 per share.

The August 31, 2004 Laurus modifications were treated as extinguishments for financial reporting purposes since the change in present value of expected cash flows between the original and modified agreements is greater than 10%. As such, lesser amount. If prior to consummation of an Offering, the Company enters intorecorded a merger, consolidation,loss on extinguishment of debt of $2,859 at August 31, 2004 reflecting the saledifference between (i) the recorded amount of substantially alldebt, net of its assets, changerelated discounts, of control, or$7,427 and (ii) the dissolutionfair value of the Company or other event causing final liquidation,new debt instrument of $10,287 plus the holdersfair value of the notes shall havenew warrants of $111. The difference between the right to elect to either receive payment in full of all principalfair value of the notesnew debt of $10,287 and accrued interest earned through date of payment, or convert all outstanding principal and unpaid interest on the notes into common stock. The holders will be entitled to receive the greater of the number of shares derived by dividing the balance due by $5.00 per share, or the number of shares having an aggregate value equal to 200% of the outstanding unpaid principal, plus all accrued interest. If the note holders elect not to convert the notes to stock at maturity, the Company will be required to repay all principal amounts, all accrued and unpaid interest, if any, and a redemption premium equal to 10% of the face value of the notes,debt of $8,572 represents a premium, which is being recognized ratablywill be reflected as a reduction of interest expense over the life of the notes. Thenew debt.

Prospectively, draws on the Credit Line may result in beneficial conversion charges to the extent the price of the Company’s common stock exceeds the conversion price on the day of the draw. Such beneficial charges will be amortized as expense to the income statement during the period the draw remains outstanding or up to the point the debt is converted into common stock thereby increasing the effective interest rate includingon the redemption premium,Credit Line.

Principal repayments under the Term Note are scheduled as follows: $850 in 2005, $900 in 2006, and $800 in 2007.

Amortization of debt premiums and discounts totaled $1,644 during 2004 and $0 in each 2003 and 2002 and is reflected as interest expense in the accompanying statement of operations.

During 2002, Cruachem Ltd., a wholly owned subsidiary of the Company, entered into a mortgage loan with The Royal Bank of Scotland. The original principal amount of the loan was 9.3%£1.0 million. Principal and interest were payable in quarterly installments. The loan carried a 15-year term and a fixed annual interest rate of 6.77%. Security for this loan was the Company’s 45,000 square foot manufacturing facility located in Glasgow, Scotland. The loan carried certain financial and non-financial covenants that included a minimum net cash flow requirement. The net book value of the facility was approximately $2,000 at December 31, 1999. 2003. During February 2004, the Company repaid the principal balance of the mortgage loan and therefore, the Company included the entire outstanding principal balance of this loan at December 31, 2003 within current liabilities.

F. COMMITMENTS AND CONTINGENCIES

The Company can require conversion after an Offering provided specific closing prices are achieved for twenty consecutive trading days. The notes contain numerous covenants with whichhas been named as a defendant in a lawsuit filed in Spain by a prospective distributor who claims that the Company is in compliance. At December 1999,breached a promise to grant the convertible notes payable balance is comprisedplaintiff a distributorship for certain of the following: Principal................................................... $12,000,000 Accrued interest and redemption premium..................... 858,665 ----------- 12,858,665 Deferred financing costs (net of accumulated amortization of $149,960)................................................. (437,655) ----------- $12,421,010 ===========
F-22 Company’s products in a specific geographic area

TRANSGENOMIC, INC. AND SUBSIDIARIES

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS YEARS ENDED DECEMBER– (Continued)

Years Ended December 31, 1997, 1998 AND 1999 (CONTINUED) H. LEASE COMMITMENTS 2004, 2003 and 2002

(Dollars in thousands except per share data)

in Europe. The plaintiff is seeking monetary relief of approximately $500. The Company believes the lawsuit is without merit and intends to vigorously defend this matter.

The Company is subject to a number of other claims of various amounts, which arise out of the normal course of business. In the opinion of management, the disposition of all claims currently pending will not have a material adverse effect on the Company’s financial position, results of operations or cash flows, after considering amounts already reflected in the consolidated financial statements.

The Company leases certain equipment, vehicles and operating facilities. The Company'sCompany’s leases related to its operating facilities currently expire on various dates ranging from 1999 through 2006. However, one lease allows for cancellation at either 36 or 48 months upon 60 days advanced written notice.2010. At December 31, 1999,2004, the future minimum lease payments required under noncancellablenon-cancellable lease provisions are approximately $830,000$1,958 in 2000; $591,0002005, $1,382 in 2001; $304,0002006, $486 in 2002; $148,0002007, $187 in 2003; $128,0002008, $191 in 2004;2009, and a total of approximately $188,000$181 in rental payments for the years 2005 through 2006.2010. Rent expense related to all operating leases for the years ended December 31, 1997, 19982004, 2003 and 19992002 was approximately $441,000, $655,000$2,007, $2,487 and $984,000,$2,266, respectively. I.

At December 31, 2004, the Company had firm commitments totaling $798 to a vendor to purchase components used in WAVE Systems.

G. INCOME TAXES

Loss before income taxes consists of the following:

   Years ended December 31,

 
   2004

  2003

  2002

 

United States

  $(30,467) $(19,809) $(19,640)

International

   (3,999)  (3,084)  (1,620)
   


 


 


   $(34,466) $(22,893) $(21,260)
   


 


 


The Company'sCompany’s provision for income taxes for the years ended December 31, 1997, 19982004, 2003 and 19992002 differs from the amounts determined by applying the statutory Federal income tax rate to incomeloss before income taxes for the following reasons:
1997 1998 1999 ----------- --------- ----------- Benefit at Federal Rate.................................. $(1,239,547) $(852,176) $(2,747,748) Increase (decrease) resulting from: State income taxes-net of federal benefit.............. (45,004) (85,805) (62,520) Intangible amortization................................ 46,804 39,020 42,925 Research and development tax credit.................... (15,319) (23,534) (54,231) Meals and entertainment................................ 16,999 27,037 38,687 Other-net.............................................. (121) (34,549) 37,160 Valuation allowance.................................... -- -- 4,491,000 ----------- --------- ----------- Total income tax expense (benefit)....................... $(1,236,188) $(930,007) $ 1,745,273 =========== ========= ===========

   2004

  2003

  2002

 

Benefit at Federal Rate

  $(11,718) $(7,784) $(7,228)

Increase (decrease) resulting from:

             

State income taxes—net of federal benefit

   (595)  (485)  (518)

Foreign subsidiary tax rate difference

   493   427   224 

Research and development tax credit

   (141)  (250)  (188)

Impairment charges

   3,569   —     —   

Other—net

   78   82   137 

Valuation allowance

   8,220   8,075   7,678 
   


 


 


Total income tax expense (benefit)

  $(94) $65  $105 
   


 


 


The Company'sCompany’s deferred income tax asset at December 31, 19982004 and 19992003 is comprised of the following temporary differences:
1998 1999 ---------- ---------- Net operating loss carryforward...................... $1,497,000 $4,289,000 Allowance for doubtful accounts...................... 221,000 60,000 Fixed asset depreciation............................. 121,000 124,000 Accrued vacation..................................... 114,000 137,000 Intellectual property amortization................... -- 61,000 ---------- ---------- 1,953,000 4,671,000 Less valuation allowance............................. -- (4,491,000) ---------- ---------- $1,953,000 $ 180,000 ========== ==========

   2004

  2003

 

Net operating loss carryforward

  $35,587  $29,292 

Research and development credit carryforwards

   1,328   1,188 

Deferred revenue

   708   400 

Accrued vacation

   81   134 

Other

   583   (422)
   


 


    38,287   30,592 

Less valuation allowance

   (38,287)  (30,592)
   


 


   $—    $—   
   


 


TRANSGENOMIC, INC. AND SUBSIDIARIES

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS – (Continued)

Years Ended December 31, 2004, 2003 and 2002

(Dollars in thousands except per share data)

At December 31, 1999,2004, the Company hashad total used federal tax net operating loss carryforwards of $91,474 of which $1,770 expire in 2008, $3,698 expire in 2009, $2,970 expire in 2010, $943 expire in 2011, $3,425 expire in 2012, $1,838 expire in 2018, $8,182 expire in 2019, $9,662 expire in 2020, $8,228 expire in 2021, $16,862 expire in 2022; $16,173 expire in 2023 and $17,723 expire in 2024. Of these federal net operating loss carryforwards, $11,820 were obtained in the acquisition of Annovis, Inc. and may be subject to certain restrictions. At December 31, 2004, the Company had unused state tax net operating loss carryforwards of approximately $2,106,000 which expire in 2012, $1,828,000 which expire in 2018 and $7,638,000 which F-23 TRANSGENOMIC, INC. AND SUBSIDIARIES NOTES TO CONSOLIDATED FINANCIAL STATEMENTS YEARS ENDED DECEMBER 31, 1997, 1998 AND 1999 (CONTINUED) I. INCOME TAXES (CONTINUED) will expire in 2019. Additionally, at December 31, 1999, the Company has unused general business credits earned primarily through increased research expenditures of approximately $131,000. These credits$37,619 that expire at various times between 20102005 and 2019. The Company's management believes2024. At December 31, 2004, the Company had unused research and development credit carryforwards of $1,328 that it is more likely than not that the deferred tax asset of $180,000 will be realized through the sale of the business discussed in Note R.expire at various times between 2008 and 2024. A valuation allowance has been provided in 1999 for the remaining deferred tax assets, due to the Company'sCompany’s cumulative losses in recent years, expected losses in future years and an inability to utilize any additional losses as carrybacks. The Company will continue to assess the recoverability of deferred tax assets and the related valuation allowance. To the extent the Company begins to generate income in future years and it is determined that such valuation allowance is no longer required, the tax benefit of the remaining deferred tax assets will be recognized at such time. At December 31, 1998, the Company's management had determined that it was more likely than not that the deferred tax asset of $1,953,000 would be realized through expected profits in future years. J.

H. EMPLOYEE BENEFIT PLAN

The Company maintains an employee 401(k) retirement savings plan whichthat allows for voluntary contributions into designated investment funds by eligible employees. The Company matches the employees'employees’ contributions at the rate of 50% on the first 6% of contributions. The Company may at the discretion of its Board of Directors, make additional contributions on behalf of the Plan'sPlan’s participants. Company contributions were $92,733, $117,923 and $174,973approximately $500 for each of the three years ended December 31, 1997, 1998 and 1999, respectively. K. STOCKHOLDERS'2004.

I. STOCKHOLDERS’ EQUITY PRIVATE PLACEMENT

Preferred Stock.

The Company issued 2,000,000 shares of the Company's common stock, par value $.01 per share (the "Stock"), at a price of $5.00 per share in a private placement during 1997 and 1998 for net proceeds of $1,623,869 and $7,300,059, respectively. A total of 1,524,500 shares of the 2,000,000 shares of common stock were placed by Placement Agents pursuant to selling agent agreements. A 9% commission was paid to each Placement Agent on all sales of the common stock made by it and broker-dealers. The Company also issued warrants to the Placement Agents with an exercise price of $5.00 per share (subject to certain cashless exercise rights) which will have terms of five years expiring in 2003. Total shares eligible to be purchased through these warrants were 152,450 at December 31, 1999 (see Note L). In 1999, the Company issued convertible notes which can be converted into a minimum of 2,400,000 common shares (see Note G). PREFERRED STOCK. The Company'sCompany’s Board of Directors is authorized to issue up to 15,000,000 shares of preferred stock in one or more series, from time to time, with such designations, powers, preferences and rights and such qualifications, limitations and restrictions as may be provided in a resolution or resolutions F-24 TRANSGENOMIC, INC. AND SUBSIDIARIES NOTES TO CONSOLIDATED FINANCIAL STATEMENTS YEARS ENDED DECEMBER 31, 1997, 1998 AND 1999 (CONTINUED) K. STOCKHOLDERS' EQUITY (CONTINUED) adopted by the Board of Directors. The authority of the Board of Directors includes, but is not limited to, the determination or fixing of the following with respect to shares of such class or any series thereof: (i) the number of shares; (ii) the dividend rate, whether dividends shall be cumulative and, if so, from which date; (iii) whether shares are to be redeemable and, if so, the terms and amount of any sinking fund providing for the purchase or redemption of such shares; (iv) whether shares shall be convertible and, if so, the terms and provisions thereof; (v) what restrictions are to apply, if any, on the issue or reissue of any additional preferred stock; and (vi) whether shares have voting rights. The preferred stock may be issued with a preference over the common stock as to the payment of dividends. The Company has no current plans to issue any series of preferred stock. Classes of stock such as the preferred stock may be used, in certain circumstances, to create voting impediments on extraordinary corporate transactions or to frustrate persons seeking to effect a merger or otherwise to gain control of the Company. For the foregoing reasons, any preferred stock issued by the Company could have an adverse effect on the rights of the holders of the common stock. COMMON STOCK.

Common Stock.

During 2004, the Company issued 1,134,850 shares of common stock in conjunction with conversions under the Laurus Loans.

Date

 Price

 Shares
Issued


 

Net

Proceeds


 Facility

 Applied To

January 2004 $2.20 650,000 $1,422 Credit Line Principal
February 2004 $2.20 259,091  570 Credit Line Principal
December 2004 $1.00 150,000  146 Term Note Principal
December 2004 $1.00 75,759  72 Term Note Interest
     
 

    
     1,134,850 $2,210    
     
 

    

In March 2000,September 2003, the Company's BoardCompany issued 1,780,000 shares of Directorsits common stock and in November 2003, the Company issued 2,720,000 shares of its common stock in privately-negotiated sales. These shares were sold pursuant to the terms of a Securities Purchase Agreement, dated August 27, 2003. The sale of these shares was exempt from registration under the Securities Act of 1933, as amended (the “Securities Act”) as a sale not involving a public offering. These shares have been registered for resale under the Securities Act. The net proceeds to the Company, after payment of transaction fees and other expenses of the offering, were approximately $4,202.

TRANSGENOMIC, INC. AND SUBSIDIARIES

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS – (Continued)

Years Ended December 31, 2004, 2003 and 2002

(Dollars in thousands except per share data)

In May 2001, Company shareholders approved an increasethe adoption of the Transgenomic, Inc. 2001 Employee Stock Purchase Plan that was subsequently implemented in November 2001. Substantially all of the Company’s U.S. employees are eligible to participate in the Plan. Eligible employees authorize payroll deductions to be made for the purchase of shares. Such deductions are accumulated during a defined participation period at the end of which each participant is deemed to have been granted an option to purchase shares of stock from the Company at 85% of the fair market value of the Company stock as measured by the closing price of the stock on either the first or last business day of the participation period, whichever is lower. The number of authorized common shares to 60,000,000, subject topurchased under the approvaloption is based upon the participants elected withholding amount. At the end of the Company's stockholders. L.participation period such option is automatically exercised. This plan is structured to qualify as an “employee stock purchase plan” under Section 423 of the Internal Revenue Code of 1986, as amended. During 2004, 2003 and 2002 there were 76,902, 107,077 and 56,842 shares issued under this plan, respectively.

Common Stock Warrants.

The following is a summary of the 1,159,421 common stock warrants outstanding at December 31, 2004. No warrants expired or were exercised during 2004.

Warrant Holder


  Issue
Year


  Expiration
Year


  Underlying
Shares


  Exercise
Price


Laurus Master Fund, Ltd.(1)

  2003  2010  200,000  $2.25

Laurus Master Fund, Ltd.(1)

  2003  2010  200,000  $2.44

Laurus Master Fund, Ltd.(1)

  2003  2010  150,000  $2.32

Laurus Master Fund, Ltd.(1)

  2004  2011  125,000  $3.11

Laurus Master Fund, Ltd.(1)

  2004  2011  400,000  $1.25

TN Capital Equities, Ltd.(1)

  2003  2008  45,918  $2.94

TN Capital Equities, Ltd.(1)

  2004  2009  15,566  $3.18

GE Capital(2)

  2002  2007  13,762  $3.27

GE Capital(2)

  2003  2008  9,175  $3.27

(1)These warrants were issued in conjunction with the Laurus Loans and subsequent modifications. Refer to Note E.
(2)These warrants were issued in conjunction with operating leases with GE Capital. While the leases have since been terminated, the warrants are still outstanding.

J. STOCK OPTIONS AND WARRANTS

The Company adopted theCompany’s 1997 Stock Option Plan, in June of 1997 which was lastas amended and restated on October 14, 1998. The Company's 1997 Stock(the “Stock Option Plan (the "Stock Option Plan"Plan”), allows the Company to grant both incentive stock options and nonqualified stock options to acquire shares of the Company'sCompany’s common stock to employees and directors of the Company and to nonemployee advisors. Either incentive or non-qualified stock options may be granted to employees of the Company, but only nonqualified stock options may be granted to nonemployee directors and advisors. The maximum number of shares for which options may be granted under the Stock Option Plan is 4,000,000.7,000,000. The Stock Option Plan is administered by the Compensation Committee of the Board of Directors (the "Committee"“Committee”) which has the authority to set the number, exercise price, term and vesting provisions of the options granted under the Stock Option Plan, subject to the terms thereof. The options must be granted at exercise prices not less than the fair market value of the common stock on the date of the grant. Generally, the stock options vest at a rate of either 20% per year over a fivefive-year period or 33 1/3% per year over a three-year period and expire 10 years after the date the option was granted. If the option holder ceases to be employed by the Company, the Company will have the right to terminate any outstanding but unexercised options. In March 2000, the Company's Board of Directors approved an amendment to the Stock Option Plan to increase the number of shares for which options can be granted to 6,000,000, subject to the approval of the Company's stockholders. F-25 TRANSGENOMIC, INC. AND SUBSIDIARIES NOTES TO CONSOLIDATED FINANCIAL STATEMENTS YEARS ENDED DECEMBER 31, 1997, 1998 AND 1999 (CONTINUED) L. STOCK OPTIONS AND WARRANTS (CONTINUED)

The following table summarizes activity under the Stock Option Plan during the three years ended December 31, 1999:
WEIGHTED AVERAGE NUMBER OF EXERCISE OPTIONS PRICE --------- -------- Balance at Inception (June 1997):........................ -- $ -- Granted................................................ 1,515,000 5.00 Exercised.............................................. -- -- Canceled............................................... -- -- --------- Balance at December 31, 1997:............................ 1,515,000 5.00 Granted................................................ 1,690,250 5.00 Exercised.............................................. -- -- Canceled............................................... -- -- --------- Balance at December 31, 1998:............................ 3,205,250 5.00 Granted................................................ 590,250 5.00 Exercised.............................................. -- -- Canceled............................................... (257,750) 5.00 --------- Balance at December 31, 1999............................. 3,537,750 ========= Exercisable at December 31, 1999......................... 2,028,650 =========
2004:

   Number of
Options


  Weighted
Average
Exercise
Price


Balance at January 1, 2002

  5,133,831   6.90

Granted

  632,000   5.09

Exercised

  (81,900)  5.01

Forfeited

  (539,021)  7.69
   

 

Balance at December 31, 2002:

  5,144,910   6.62

Granted

  1,282,000   1.64

Exercised

  —     —  

Forfeited

  (733,994)  7.25
   

 

Balance at December 31, 2003:

  5,692,916   6.62
   

   

Granted

  360,000   1.70

Exercised

  —     —  

Forfeited

  (964,879)  5.24
   

 

Balance at December 31, 2004:

  5,088,037  $5.09
   

 

Exercisable at December 31, 2004

  4,214,214  $5.55
   

 

TRANSGENOMIC, INC. AND SUBSIDIARIES

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS – (Continued)

Years Ended December 31, 2004, 2003 and 2002

(Dollars in thousands except per share data)

The weighted average fair value per share of options granted in 1997, 19982004, 2003 and 19992002 was $1.34, $1.02$0.40, $0.93 and $1.00,$2.92, respectively. At December 31, 1999, the weighted average remaining contractual life of options outstanding was 8.4 years. In 1997, the Company granted options to purchase 1.5 million shares at $5.00 per share to an officer of the Company which are fully vested and exercisable at December 31, 1997 and expire in 2007. The Company has also granted options to purchase shares of common stock with an aggregate fixed cost of $75,000 to a member of the Company's Board of Directors at an exercise price which is the lower of (a) $5.00 per share for 15,000 shares or (b) 50% of the price per share at which the Company offers common stock in an initial public offering, of which 66.67% of the shares are vested and exercisable at December 31, 1999. The remaining options issued in 1997 vest over two years and expire in 2002.

The Company has elected to follow the measurement provisions of Accounting Principles Board OpinionAPB No. 25, under which no recognition of expense is required in accounting for stock options granted to employees for which the exercise price equals or exceeds the deemed fair market value of the stock at the grant date. In those cases where options have been granted with an exercise price below the deemed fair market value, the Company recognizes compensation expense using the straight-line method over the vesting periods of the individual stock options. During December 1999,

Stock-based compensation expense recorded by the Company recordedrepresents amortization of unearned compensation of $112,500 forrelated to options granted to employees with an exercise pricesprice less than the deemed fair market value at the date of grant. Pro forma information regarding net incomegrant and income per share is required by Statement of Financial Accounting Standard No. 123, ACCOUNTING FOR STOCK-BASED COMPENSATION, (SFAS No. 123) F-26 TRANSGENOMIC, INC. AND SUBSIDIARIES NOTES TO CONSOLIDATED FINANCIAL STATEMENTS YEARS ENDED DECEMBER 31, 1997, 1998 AND 1999 (CONTINUED) L. STOCK OPTIONS AND WARRANTS (CONTINUED) assumingoptions granted to non-employees. During 2004, 2003 and 2002, the Company accounted for its employee stock options using the fair value method.recorded compensation expense of $0, $93 and $131, respectively. The fair value of each stock option granted is estimated at the date of grantexpense amounts were calculated using the Black-Scholes option pricing model with the following weighted average assumptions for options granted in 1997, 1998 and 1999, respectively: no common stock dividends, risk-free interest rates ranging from 5.44% and 5.74% to 6.33% and 5.51% to 6.13%; no volatility (prior to becoming a public company); and an expected option life of five years. Pro forma net income and income per share assuming compensation expense for the Stock Option Plan had been determined under SFAS No. 123, are as follows:
1997 1998 1999 ----------- ----------- ----------- Net Loss: As reported.......................... $(2,409,539) $(1,576,393) $(9,826,886) Pro forma............................ (4,421,148) (1,662,641) (9,974,172) Basic and diluted loss per share: As reported.......................... (0.22) (0.13) (0.76) Pro forma............................ (0.40) (0.14) (0.77)
In the first quarter of fiscal 2000, the Company granted 212,500 options, including 72,000 options with exercise prices at $5.00 per share and will record unearned compensation in connection with these grants. During 1998, the Company issued warrants to purchase 152,450 shares of common stock pursuant to placement agent agreements (see Note K). On December 16, 1997, the Company issued a warrant to purchase 300,000 shares of common stock pursuant to a Securities Purchase Agreement (see Note M). M. RELATED PARTY TRANSACTIONS CT PARTNERS. The Company and CT Partners were related parties through common ownership. The Company provided research and development services for CT Partners at cost. The cost of these services amounted to $650,782 and $318,800 for the years ended December 31, 1996 and 1997, respectively. There were no research and development services provided subsequent to 1997 as the technology involved was fully developed. These amounts are included in note receivable-related party, along with accrued interest and administration fees of $116,349 at December 31, 1998. The Company also performs contract research and development services for unaffiliated entities. On June 27, 1997 the Company entered into a royalty agreement with CT Partners in which the Company received an exclusive license to manufacture and market a miniature solid-state optical spectrometer developed by CT Partners. This agreement was amended on December 1, 1997. Under the terms of the amended royalty agreement, the Company would pay a royalty to CT Partners equal to a maximum of $6.5 million. The first $1.5 million would be paid upon achieving $3 million in sales of products employing the licensed technology or from a sale of the technology. Subsequent royalty payments would equal 10% of gross revenues received by the Company from the licensed technology, payable quarterly. At December 31, 1998, CT Partners owed the Company $1,085,931 for contract research and development expenses incurred in connection with this agreement. F-27 TRANSGENOMIC, INC. AND SUBSIDIARIES NOTES TO CONSOLIDATED FINANCIAL STATEMENTS YEARS ENDED DECEMBER 31, 1997, 1998 AND 1999 (CONTINUED) M. RELATED PARTY TRANSACTIONS (CONTINUED) In June 1999, the Company and CT Partners entered into an Asset Purchase Agreement whereby the parties terminated the royalty agreement and the Company purchased all intellectual property previously developed for CT Partners for $2 million in cash, less the outstanding note receivable of $1,085,931 and certain related expenses. The Company is amortizing the intellectual property over 5 years. SECURITIES PURCHASE AGREEMENT. On December 16, 1997, the Company entered into a Securities Purchase Agreement with a private investor who subsequently was elected as a director of the Company, pursuant to which the private investor purchased from the Company a secured promissory note in the principal amount of $1,500,000 (the "$1,500,000 Note") and a warrant to purchase 300,000 shares of common stock (the "300,000 Share Warrant"), subject to adjustment. The agreement allowed the purchase of additional debt securities from the Company. In February 1998, the Company was informed, as allowed by the agreement, that no additional debt securities would be purchased. Therefore, in accordance with the terms of the agreement, in 1998 the Company paid the $1,500,000 Note plus interest and other agreed-to expenses. The private investor is no longer a director of the Company. The 300,000 Share Warrant entitles the holder to acquire 300,000 shares of common stock at the lower of (a) $5.00 per share or (b) 50% of the price per share at which the Company offers common stock in an initial public offering. The 300,000 Share Warrant will expire if it has not been exercised on or before the Company's initial public offering. The warrants were valued at $82,117 at December 31, 1997 using the Black-Scholes pricing model with the following assumptions: no common stock dividends, risk freerisk-free interest rate of 5.71%rates ranging from 3.10% to 6.53%; volatility ranging from 35% to 85%; and an expected option life of 12 months; and no volatility. These warrants were completely amortized1 to 7.5 years.

The following table summarizes information about options outstanding as of December 31, 1998. N. COMMITMENTS2004:

   Options Outstanding

  Options Exercisable

Range of Exercise Prices


  Number
Outstanding


  Weighted-
Average
Remaining
Contractual
Life


  Weighted-
Average
Exercise
Price


  Number
Exercisable


  Weighted-
Average
Exercise
Price


      (in years)         

$ 1.00—$ 1.30

  408,335  6.8  $1.30  155,011  $1.30

$ 1.31—$ 2.60

  1,009,167  7.9  $1.89  551,850  $1.90

$ 2.61—$ 3.90

  50,002  5.5  $2.90  38,336  $2.90

$ 3.91—$ 5.20

  2,142,200  3.0  $5.00  2,142,200  $5.00

$ 5.21—$ 6.50

  768,182  6.1  $6.16  692,633  $6.15

$ 6.51—$ 9.10

  10,000  6.4  $9.00  10,000  $9.00

$ 9.11—$10.40

  396,420  5.6  $9.88  358,253  $9.88

$10.41—$13.00

  303,731  5.2  $12.80  265,931  $12.81
   
  
  

  
    
   5,088,037  5.1  $5.09  4,214,214  $5.55
   
  
  

  
  

K. OPERATING SEGMENT AND CONTINGENCIES GEOGRAPHIC INFORMATION

The Company operates in two reportable segments, BioSystems and Nucleic Acids. Operations for these segments are evaluated based upon specific identification of revenues and expenses associated with the business activities resulting in a segment operating income. Expenses that cannot be directly identified to an operating activity or are considered corporate overhead are not allocated to the segments in arriving at operating income for the segment. Generally, decisions regarding asset allocation, financing, taxes or other items impacting the Company’s Balance Sheet are made at the corporate level and, accordingly, operating segment Balance Sheet information is not a party to any material legal proceedings. In May 1998, the Company elected to self-insure the majority of its employees' health care coverage with lifetime coverage up to $2,000,000 and $5,000,000 per person at December 31, 1998 and 1999, respectively. In place are reinsurance policies limiting losses for any individual within the plan of $10,000 per year, and a total company aggregate stop-loss limit at December 31, 1999 of approximately $282,000, with coverage up to $2,282,000 of aggregated total claims. Based on estimated claims and the reinsurance in place, management believes the costs are reasonably estimated in the financial statements. O. SALES AND PRODUCT INFORMATION The Company believes it is advantageous to operate on a fully integrated basis in onetypically reviewed by operating segment. Accordingly, management of the Company evaluates performance and determines the allocation of resources on an entity-wide basis. There are no material long-lived assets held outside the F-28 decision makers.

TRANSGENOMIC, INC. AND SUBSIDIARIES

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS YEARS ENDED DECEMBER– (Continued)

Years Ended December 31, 1997, 1998 AND 1999 (CONTINUED) O. SALES AND PRODUCT INFORMATION (CONTINUED) United States. 2004, 2003 and 2002

(Dollars in thousands except per share data)

The BioSystems operating segment generates revenue from the sale of automated instrument systems and associated consumable products and services. This segments products are based upon two of the Company’s three core competencies, separations chemistries and enzymology. Specifically, this segment’s main products are the WAVE system, related bioconsumables and research services.

The Nucleic Acids operating segment generates revenue from the sale of products and services based upon all three of the Company’s core competencies, nucleic acid chemistries, separations chemistries and enzymology. Specifically, this segments main products are nucleic acid building blocks or “phosphoramidites”, fluorescent markers, dyes and associated reagents and novel chemistry and process development services.

The following is information for net sales and operating income by segment.

   2004

  2003

  2002

 

Net Sales

             

BioSystems

  $25,243  $26,044  $24,235 

Nucleic Acids

   8,546   7,822   13,319 
   


 


 


Total

  $33,789  $33,866  $37,554 
   


 


 


Loss from operations

             

BioSystems

  $(2,294) $(2,786) $(9,417)

Nucleic Acids

   (17,623)  (12,440)  (1,004)

Corporate

   (9,143)  (7,362)  (11,276)
   


 


 


Total

  $(29,060) $(22,588) $(21,697)
   


 


 


During 2004, sales to Geron Corporation totaled $4,151 and represented 49% of net sales within our Nucleic Acids operating segment and 12% of total consolidated net sales. During 2003 and 2002 no single customer accounted for more than 10% of operating segment or consolidated net sales.

The following is information for fixed assets and fixed asset additions by segment. Fixed assets are tracked by location and department and thus can be identified to operating segments even though specific segment Balance Sheets are not produced.

   2004

  2003

Fixed Assets

        

BioSystems

  $2,695  $3,412

Nucleic Acids

   10,150   13,991

Corporate

   680   1,301
   

  

Total

  $13,525  $18,704
   

  

Fixed Asset Additions

        

BioSystems

  $901  $1,000

Nucleic Acids

   848   5,393

Corporate

   9   20
   

  

Total

  $1,758  $6,413
   

  

The following is supplemental information for net sales by geographic area.

   2004

  2003

  2002

Sales by Geographic Area:

            

United States

  $13,580  $12,251  $16,805

Europe

   15,392   15,955   16,011

Pacific Rim

   2,794   3,335   4,129

Other

   2,023   2,325   609
   

  

  

Total

  $33,789  $33,866  $37,554
   

  

  

Long-lived assets by geographic area as of December 31 are as follows:

   2004

  2003

United States

  $7,754  $20,935

Europe

   7,564   9,705

Pacific Rim

   11   32
   

  

Total

  $15,329  $30,672
   

  

TRANSGENOMIC, INC. AND SUBSIDIARIES

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS – (Continued)

Years Ended December 31, 2004, 2003 and product group:
1997 1998 1999 ----------- ----------- ----------- Sales by Geographic Area: United States....................... $ 6,435,359 $10,214,962 $10,001,539 Europe.............................. 3,009,936 6,248,695 9,286,394 Pacific Rim......................... 1,620,735 1,704,190 2,992,099 Other............................... 510,647 767,593 754,922 ----------- ----------- ----------- Total................................. $11,576,677 $18,935,440 $23,034,954 =========== =========== =========== Sales by Product Group: Bio-Systems......................... $ 295,000 $ 5,460,684 $11,218,887 Bio-Consumables..................... 2,275 209,814 1,435,702 Scientific Instruments.............. 9,410,072 11,496,105 8,794,165 Other Consumables................... 1,869,330 1,768,837 1,586,200 ----------- ----------- ----------- Total................................. $11,576,677 $18,935,440 $23,034,954 =========== =========== ===========
P. SUPPLEMENTAL CASH FLOW INFORMATION
1997 1998 1999 -------- -------- ---------- Noncash investing and financing activities: Exchange of note receivable for intellectual property..................................... $ -- $ -- $1,085,931 Liabilities assumed in connection with business acquisitions................................. $ -- $ -- $ 135,333 Reduction of equity and increase in other accrued expenses for redemption of preferred stock and preferred stock dividends.......... $52,161 -- --
Q. ALLOWANCE FOR DOUBTFUL ACCOUNTS 2002

(Dollars in thousands except per share data)

L. QUARTERLY RESULTS (UNAUDITED)

The following is a summarytable contains selected unaudited consolidated statements of activityoperations data for the allowanceeach quarter for doubtful acounts duringfiscal years 2004 and 2003.

   2004

 
   1st
Quarter


  2nd
Quarter


  3rd
Quarter


  4th
Quarter


  Total

 

Net Sales

  $8,629  $9,011  $8,194  $7,955  $33,789 

Gross Profit

  $2,861  $3,153  $1,337  $1,842  $9,193 

Net loss

  $(3,859) $(15,132) $(8,442) $(6,939) $(34,372)

Basic & Diluted Loss Per Share

  $(0.13) $(0.52) $(0.29) $(0.24) $(1.19)

Basic and Diluted Weighted Average Shares Outstanding

   28,728   29,053   29,078   29,338   29,006 

   2003

 
   1st
Quarter


  2nd
Quarter


  3rd
Quarter


  4th
Quarter


  Total

 

Net Sales

  $9,505  $8,481  $7,537  $8,343  $33,866 

Gross Profit

  $3,691  $2,556  $775  $2,529  $9,551 

Net loss

  $(3,596) $(4,670) $(6,097) $(8,595) $(22,958)

Basic & Diluted Loss Per Share

  $(0.15) $(0.20) $(0.25) $(0.32) $(0.94)

Basic and Diluted Weighted Average Shares Outstanding

   23,519   23,540   24,177   26,723   24,484 

Earnings per share are computed independently for each of the three years ended December 31, 1999:
ADDITIONAL BEGINNING CHARGES DEDUCTIONS ENDING BALANCE TO INCOME FROM RESERVE BALANCE --------- ---------- ------------ -------- Year Ended December 31, 1997....................... $ -- $102,495 $ (2,495) $100,000 Year Ended December 31, 1998....................... 100,000 462,698 (1,053) 561,645 Year Ended December 31, 1999....................... 561,645 121,609 (522,661) 160,593
R. SUBSEQUENT EVENTS quarters presented. Therefore, the sum of the quarterly per share losses may not equal the annual loss per share.

M. SALE OF SPECIALTY OLIGONUCLEOTIDE MANUFACTURING FACILITY

On March 7, 2000,November 11, 2004, the Company signedsold the assets associated with its specialty oligonucleotides manufacturing facility in Boulder, Colorado to a lettersubsidiary of intent forEyetech Pharmaceuticals, Inc. (“Eyetech”). The sale price was $3,000 in cash plus the assumption of the lease on the Boulder facility and of certain equipment leases with a gross value of $2,377. Substantially all of the 27 employees at the Boulder facility became Eyetech employees. Net proceeds from the sale (after transaction expenses and fees paid to our investment advisors) equaled approximately $2,700. In conjunction with this transaction, we recorded a gain on sale of $1,466 in the fourth quarter of 2004.

N. RESTRUCTURING PLANS

On November 13, 2004, the Company’s Board of Directors approved a restructuring plan designed to refocus on the BioSystems operating segment and to better align the Company’s cost structure with anticipated revenues. The plan (which is incremental to the sale of the assetsspecialty oligonucleotide manufacturing facility in Boulder, Colorado facility) included a workforce reduction of approximately 60 positions and the closure of two domestic research and development facilities associated with our Nucleic Acids operating segment and two European field offices. Additionally, the Company eliminated approximately 10 positions at its non-life sciences instrument product linechemical building blocks manufacturing facility in Glasgow, Scotland. In conjunction with these changes, the Company incurred a charge of $3,570 during the quarter ending December 31, 2004 consisting of severance benefits of $1,406, future rents on closed facilities (net of projected sublease rents) of $1,241, the write-off property and equipment specifically attributable to closed facilities of $740 and other costs of $183. The Company had accrued expenses associated with this restructuring plan of $1,909 at December 31, 2004 of which $1,486 is expected to be paid 2005 and $423 in 2006.

TRANSGENOMIC, INC. AND SUBSIDIARIES

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS – (Continued)

Years Ended December 31, 2004, 2003 and 2002

(Dollars in thousands except per share data)

During the fourth quarter of 2002 management formulated and executed a directorsignificant portion of a restructuring plan. The plan was developed to reduce expenses thereby better aligning the Company’s expense structure with current business prospects. The plan included employee terminations, office closures, termination of collaborations and write-offs of abandoned intellectual property. Specifically, in the fourth quarter of 2002 the Company notified approximately 60 employees of their termination, notified landlords of our intent to close four facilities and reduce our space commitment under lease at two other facilities, terminated certain consulting and collaboration agreements and abandoned certain patents. As a result of the plan $3,282 in restructuring charges were recorded and are included in operating expenses. These charges consisted of approximately $775 of employee severance costs, $1,200 in office closure related costs, $400 of collaboration and other agreement termination charges and $900 in write-offs of abandoned intellectual property. Approximately 45% of the total charges were for non-cash items. Additional restructuring charges totaling $741 were incurred in the first half of 2003. The Company for $6,000,000,had accrued expenses associated with these restructuring activities of which $5,000,000 will be paid in cash$0 at December 31, 2004 and $1,000,000 will be paid with an interest-bearing promissory note due$227 at December 31, 2003.

O. SUBSEQUENT EVENTS

On March 18, 2005, Laurus agreed to further extend the borrowing base waiver on the Credit Line until March 31, 2001. The non-life science instrument product line contributed revenues of $8,794,165 in 1999. The Company expects this transaction to close on March 31, 2000, subject to the approval of the Company's stockholders. F-29 UNAUDITED PRO FORMA FINANCIAL INFORMATION The following unaudited pro forma statement of operations for the nine months ended September 30, 2000 and the year ended December 31, 1999 reflects the sale of assets related to our non-life sciences instrument product line on May 19, 2000 as if the sale had occurred on January 1, 1999. The unaudited pro forma statements of operations reflects all adjustments necessary in the opinion of the Company's management (consisting only of normal recurring adjustments) for a fair presentation of such data. The unaudited financial data are intended for informational purposes only and are not intended to be indicative of our results of operations had this transaction occurred on the dates specified, nor is it indicative of our future results of operations. The unaudited pro forma financial data, including notes thereto, should be read in conjunction with our historical consolidated financial statements, including notes thereto, appearing elsewhere in this Prospectus. F-30 TRANSGENOMIC, INC. UNAUDITED PRO FORMA STATEMENT OF OPERATIONS FOR THE NINE MONTHS ENDED SEPTEMBER 30, 2000
ADJUSTMENTS FOR SALE OF NON-LIFE SCIENCES THE INSTRUMENT THE COMPANY PRODUCT COMPANY (1) LINE PRO FORMA ----------- ----------- ----------- NET SALES................................................. $18,785,721 $2,170,674 (2a) $16,615,047 COST OF GOODS SOLD........................................ 9,401,352 1,432,955 (2a,b) 7,968,397 ----------- ---------- ----------- Gross profit.......................................... 9,384,369 737,719 8,646,650 OPERATING EXPENSES Selling, general and administrative..................... 10,362,474 415,323 (2b,c) 9,947,151 Research and development................................ 5,650,088 419,222 (2b) 5,230,866 Stock based compensation expense........................ 791,327 573,600 (2c) 217,727 ----------- ---------- ----------- 16,803,889 1,408,145 15,395,744 ----------- ---------- ----------- LOSS FROM OPERATIONS...................................... (7,419,520) (670,426) (6,749,094) OTHER INCOME (EXPENSE).................................... (869,293) -- (869,293) ----------- ---------- ----------- LOSS BEFORE INCOME TAXES.................................. (8,288,813) (670,426) (7,618,387) INCOME TAX EXPENSE........................................ -- -- -- ----------- ---------- ----------- NET LOSS.................................................. $(8,288,813) $ (670,426) $(7,618,387) =========== ========== =========== BASIC AND DILUTED LOSS PER SHARE.......................... $ (0.55) $ (0.51) =========== =========== BASIC AND DILUTED WEIGHTED AVERAGE SHARES OUTSTANDING..... 15,021,504 15,021,504 =========== ===========
SEE NOTES TO UNAUDITED PRO FORMA FINANCIAL INFORMATION. F-31 TRANSGENOMIC, INC. UNAUDITED PRO FORMA STATEMENT OF OPERATIONS FOR THE YEAR ENDED DECEMBER 31, 1999
ADJUSTMENTS FOR SALE OF NON-LIFE SCIENCES THE INSTRUMENT THE COMPANY PRODUCT COMPANY (1) LINE PRO FORMA ----------- ----------- ------------ NET SALES................................................ $23,034,954 $8,794,165 (2a) $ 14,240,789 COST OF GOODS SOLD....................................... 12,090,036 4,924,757 (2a,b) 7,165,279 ----------- ---------- ------------ Gross profit......................................... 10,944,918 3,869,408 7,075,510 OPERATING EXPENSES General and administrative............................. 3,771,663 236,808 (2b,c) 3,534,855 Marketing and sales.................................... 7,759,997 1,610,369 (2b) 6,149,628 Research and development............................... 6,296,859 1,728,827 (2b) 4,568,032 ----------- ---------- ------------ 17,828,519 3,576,004 14,252,515 ----------- ---------- ------------ LOSS FROM OPERATIONS..................................... (6,883,601) 293,404 (7,177,005) OTHER INCOME (EXPENSE) Interest expense, net.................................. (1,198,378) -- (1,198,378) Other, net............................................. 366 -- 366 ----------- ---------- ------------ (1,198,012) -- (1,198,012) ----------- ---------- ------------ LOSS BEFORE INCOME TAXES................................. (8,081,613) 293,404 (8,375,017) INCOME TAX EXPENSE....................................... 1,745,273 -- 1,745,273 ----------- ---------- ------------ NET LOSS................................................. $(9,826,886) $ 293,404 $(10,120,290) =========== ========== ============ BASIC AND DILUTED LOSS PER SHARE......................... $ (0.76) $ (0.78) =========== ============ BASIC AND DILUTED WEIGHTED AVERAGE SHARES OUTSTANDING.... 13,000,000 13,000,000 =========== ============
SEE NOTES TO UNAUDITED PRO FORMA FINANCIAL INFORMATION. F-32 NOTES TO UNAUDITED PRO FORMA FINANCIAL INFORMATION On May 19, 2000, we sold the assets related to our non-life sciences instrument product line to a company controlled by Stephen F. Dwyer, a director and a principal stockholder of ours, for a total adjusted purchase price of $5.65 million plus reimbursement by the buyer of expenses paid by us since March 31, 2000 in2006. In connection with this product line. Approximately $3,650,000 was paid in cash atwaiver, the closing and $2,000,000 was paid with an interest-bearing promissory note due on December 30, 2000. The note bears interest at 8.75% per annum. The purchaser financed the cash portionCompany agreed to allow Laurus to convert $1,872 of the purchase price plus initial working capital needs with borrowingsoutstanding principal balance under the Credit Line into 3,600,000 shares of approximately $4.6 million obtained from a bank. We acquiredits common stock. In addition, on March 24, 2005 the notes evidencing these loans fromCompany agreed to allow Laurus to convert $650 of the bank upon closing of our initial public offering by paying to the bank an amount equal to the entireoutstanding principal balance of the notes plus accrued and unpaid interest. Mr. Dwyer has pledged 1,200,000Term Note into 1,250,000 shares of our common stock ownedstock. As a result, the Company increased the amount available under the Credit Line by him as security for the acquired notes. All of these shares are in an escrow account as security for the notes. We anticipate that we will exercise our right to cause the shares to be sold in order to pay$1,872 and eliminated substantially all remaining 2005 scheduled principal and interestpayments on the acquired notes when due, subjectTerm Loan.

P. RESTATEMENT OF STATEMENTS OF CONSOLIDATED CASH FLOWS

Subsequent to a 180-day lock-up agreement. The acquired notes mature on December 30, 2000 and bear interest at a ratethe issuance of 8.75% per annum. The unaudited pro forma statement of operationsthe Company’s financial statements for the year ended December 31, 1999 and2004, the nine months ended September 30, 2000 reflects this sale, as ifCompany’s management determined that it had occurred on January 1, 1999.incorrectly included the amortization of software development costs within net cash flows from investing activities rather than within net cash flows from operating activities. The unaudited pro forma financial data are basedCompany’s management also determined that restricted common stock accepted as payment for goods and services from one of the Company’s customers and subsequently sold was incorrectly classified within the consolidated statements of cash flows. It is the Company’s policy to account for restricted common stock received in settlement of a customer’s accounts receivable as available for sale securities. The sale of such securities should be reflected in the consolidated statements of cash flows as an investing activity. Available for sale securities acquired for goods and services should be reflected as non-cash transactions.

As a result, the Company’s consolidated statements of cash flows for the fiscal years ended December 31, 2004 and 2003 have been restated from the amounts previously reported to correct these errors. This restatement had no impact on the following: 1. Our historicalstatements of consolidated financial statements. 2. The pro forma statement of operations adjustmentscash flows for the sale of the assets relating to our non-life sciences instrument product line are as follows: a. Elimination of the actual historical revenues and direct cost of goods sold. b. Elimination of indirect manufacturing and operating expenses. The elimination of these expenses for thefiscal year ended December 31, 1999 is based on an allocation of each department's expenses based2002. In addition, this restatement had no impact on the ratioCompany’s consolidated balance sheets or consolidated statements of actual life-sciences and non-life sciences individual employees' wages for each departmentoperations. The impact of this restatement on the consolidated statements of cash flows is as follows: (dollars in proportion to such department's total wages. Our management believes such method is reasonable. thousands):

   2004 As
Previously
Reported


  

2004

As
Restated


  2003 As
Previously
Reported


  

2003

As
Restated


 

Depreciation and amortization

  $4,009  $4,625  $3,981  $4,597 

Trading securities acquired in settlement of accounts receivable

   (4,397)  —     (1,843)  —   

Proceeds from sales of trading securities

   4,269   —     1,907   1,519 

Purchase of trading securities

   —     —     —     (1,566)

Accounts receivable

   1,063   (3,334)  619   342 

Net cash flows from operating activities

   (9,101)  (12,754)  (13,245)  (13,017)

Proceeds from the maturities and sale of available for sale securities

   —     4,269   3,612   4,000 

Change in other assets

   1,138   522   73   (543)

Net cash flows from investing activities

   2,380   6,033   (2,719)  (2,947)

25,038,320 Shares

TRANSGENOMIC, INC.

COMMON STOCK

PROSPECTUS

, 2005


PART II

INFORMATION NOT REQUIRED IN PROSPECTUS

Item 13.Other Expenses of Issuance and Distribution

The elimination forfollowing table indicates the nine months ended September 30, 2000 is based on actual department expenses. c. An increase in general and administrative expenses to reflect $200,000 and $50,000 of anticipated increased rental costs for the year ended December 31, 1999 and the nine months ended September 30, 2000, respectively, which will be incurred by us as a result of the sale of the assets relating to our non-life sciences instrument product line. We will be required to relocate to a separate facility subsequent to the sale. A decrease in general and administrative costs to eliminate $573,600 of non-recurring compensation costs incurred in connection with the accelerationoffering described in this Registration Statement, other than the underwriting discounts and commissions, all of vestingwhich will be paid by the Company. All amounts are estimates, other than the SEC registration fee.

Securities and Exchange Commission filing fee

  $2,371

Legal fees and expenses

   10,000

Accounting fees and expenses

   15,000

Printing and engraving

   1,500

Miscellaneous expenses

   1,129

Total

  $30,000
   

Item 14.Indemnification of Directors and Officers

Section 145 of employee optionsthe Delaware General Corporation Law authorizes a court to award, or a corporation to grant, indemnity to directors and officers in terms sufficiently broad to permit such indemnification under certain circumstances for liabilities (including reimbursement of expenses incurred) arising under the Securities Act of 1933.

As permitted by the Delaware General Corporation Law, the Registrant’s Third Restated Certificate of Incorporation eliminates the personal liability of its directors for monetary damages for breach of fiduciary duty as a director, except for liability (1) for any breach of the director’s duty of loyalty to the Registrant or its stockholders, (2) for acts or omissions not in good faith or that involve intentional misconduct or a knowing violation of law, (3) under Section 174 of the Delaware General Corporation Law (regarding unlawful dividends and stock purchases) or (4) for any transaction from which the director derived an improper personal benefit. If the Delaware General Corporation Law is amended to authorize further elimination or limiting of directors’ personal liability, then the Third Amended and Restated Certificate provides that the personal liability of directors will be eliminated or limited to the fullest extent provided under the Delaware General Corporation Law.

As permitted by the Delaware General Corporation Law, the Registrant’s Third Amended and Restated Certificate of Incorporation and its Bylaws provide that (1) the Registrant is required to indemnify its directors and officers to the fullest extent permitted by the Delaware General Corporation Law, subject to certain very limited exceptions, (2) the Registrant may indemnify its other employees and agents as set forth in the Delaware General Corporation Law, (3) the Registrant is required to advance expenses, as incurred, to its directors and executive officers in connection with a legal proceeding to the fullest extent permitted by the Delaware General Corporation Law, subject to certain conditions and (4) the rights conferred by the Third Amended and Restated Certificate of Incorporation and Bylaws are not exclusive.

The Delaware General Corporation Law authorizes a corporation to indemnify its directors and officers provided that the corporation shall not eliminate or limit the liability of a director as follows:

(a) for any action brought by or in the right of a corporation where the director or officer is adjudged to be liable to the corporation, except where a court determines the director or officer is entitled to indemnity;

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(b) for acts or omissions not in good faith or which involve conduct that the director or officer believes is not in the best interests of the corporation;

(c) for knowing violations of the law;

(d) for any transaction from which the directors derived an improper personal benefit; and

(e) for payment of dividends or approval of stock repurchases or redemptions leading to liability under Section 174 of the Delaware General Corporation Law.

The Delaware General Corporation Law requires a corporation to indemnify a director or officer to the extent that the director or officer has been successful, on the merits or otherwise, in defense of any action, suit or proceeding for which indemnification is lawful.

The Company maintains a director and officer insurance policy which insures the directors and officers of the Company against damages, judgments, settlements and costs incurred by reason of certain wrongful acts committed by such persons in their capacities as directors and officers.

Item 15.Recent Sales of Unregistered Securities

On October 31, 2005, we issued to a group of unaffiliated institutional investors 14,925,743 shares of our common stock, together with warrants to purchase an additional 5,970,297 shares of the Registrant’s common stock. The warrants carry an exercise price of $1.20 per share, are not callable and expire in 5 years. The shares and warrants were issued pursuant to the terms of certain Securities Purchase Agreements which were authorized and approved by our shareholders at a special meeting of the shareholders held on October 26, 2005. The aggregate proceeds from the sale were $15.08 million. We paid the placement agent a commission and expenses consisting of cash in the amount of $1.08 million. Additionally, we issued to the placement agent a warrant to purchase 932,859 shares of our common stock at an exercise price of $1.20 per share.

The offer and sale of these securities was exempt from the registration requirements of the assets relatingSecurities Act of 1933, as amended (the “Act”) under Section 4(2) of the Act and Rule 506 of Regulation D.

On September 9, 2003, we issued 1,780,000 shares of our common stock and, on November 13, 2003, we issued 2,720,000 shares of our common stock in privately-negotiated sales to certain unaffiliated institutional investors. The sale of these shares was exempt from registration under the Securities Act of 1933, as amended (the “Securities Act”) as a sale not involving a public offering. These shares were sold pursuant to the terms of a Securities Purchase Agreement, dated August 27, 2003. The net proceeds to us, after payment of a 5% sales commission to Fahnestock & Co. Inc., who acted as our non-life sciences instruments product line. d. No tax adjustment has been made due to our current net operating loss position. F-33 - -------------------------------------------------------------------------------- - -------------------------------------------------------------------------------- 3,195,047 SHARES [LOGO] COMMON STOCK --------------- PROSPECTUS ------------------ -------------------- JANUARY 15, 2001 -------------------- YOU SHOULD RELY ONLY ON INFORMATION CONTAINED IN THIS PROSPECTUS. WE HAVE NOT AUTHORIZED ANYONE TO PROVIDE YOU WITH INFORMATION DIFFERENT FROM THAT CONTAINED IN THIS PROSPECTUS. SELLING STOCKHOLDERS ARE OFFERING TO SELL, AND SEEKING OFFERS TO BUY, SHARES OF COMMON STOCK ONLY IN JURISDICTIONS WHERE OFFERS AND SALES ARE PERMITTED. THE INFORMATION CONTAINED IN THIS PROSPECTUS IS ACCURATE ONLY AS OF THE DATE OF THIS PROSPECTUS, REGARDLESS OF THE TIME OF DELIVERY OF THIS PROSPECTUS OR OF ANY SALE OF OUR COMMON STOCK. NO ACTION IS BEING TAKEN IN ANY JURISDICTION OUTSIDE THE UNITED STATES TO PERMIT A PUBLIC OFFERING OF THE COMMON SHARES OR POSSESSION OR DISTRIBUTION OF THIS PROSPECTUS IN THAT JURISDICTION. PERSONS WHO COME INTO POSSESSION OF THIS PROSPECTUS IN JURISDICTIONS OUTSIDE THE UNITED STATES ARE REQUIRED TO INFORM THEMSELVES ABOUT AND TO OBSERVE ANY RESTRICTIONS AS TO THIS OFFERING AND THE DISTRIBUTION OF THIS PROSPECTUS APPLICABLE TO THAT JURISDICTION. - -------------------------------------------------------------------------------- - -------------------------------------------------------------------------------- PART II INFORMATION NOT REQUIRED IN PROSPECTUS ITEM 16: EXHIBITS AND FINANCIAL STATEMENTS; SCHEDULES (a) Exhibits. placement agent for the sale, and other expenses of the offering, were approximately $4.24 million.

2
Item 16.Exhibits.

  2.1  Agreement and Plan of Merger, dated as of April 30, 2001, by and among Registrant, TBIO Nebraska, Inc., TBIO, Inc. and Annovis, Inc. (incorporated by reference to Exhibit 2.1 to Registrant’s Report on Form 8-K filed on May 31, 2001)
  2.2  Addendum to Agreement and Plan of Merger, dated as of May 18, 2001, by and among Registrant, TBIO Nebraska, Inc., TBIO, Inc. and Annovis, Inc. (incorporated by reference to Exhibit 2.2 to Registrant’s Report on Form 8-K filed on May 31, 2001)

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  2.3  Asset Purchase Agreement, dated May 16, 2000as of November 8, 2004, by and between the Registrant and SD AcquisitionEyetech Boulder Inc.(2) (incorporated by reference to Exhibit 2.3 to Registrant’s Annual Report on Form 10-K filed on April 15, 2005)
  3.1  SecondThird Amended and Restated Certificate of Incorporation of the Registrant (2)(incorporated by reference to Exhibit 3.1 to Registrant’s Quarterly Report on Form 10-Q filed on November 14, 2005)
  3.2  Bylaws of the Registrant (1)(incorporated by reference to Exhibit 3.2 to Registration Statement on Form S-1 (Registration No. 333-32174) filed on March 10, 2000)
  4.1  Form of Certificate of the Registrant'sRegistrant’s Common Stock (1) 4.2(incorporated by reference to Exhibit 4 to Registration Statement on Form of Warrant for Purchase of Common Stock between the Registrant and various Placement Agents (1) 5 S-1 (Registration No. 333-32174) filed on March 10, 2000)
  5.1  Opinion of Kutak Rock LLP (3)
10.1Fourth Amended and Restated 1997 Stock Option Plan of the Registrant (1) (incorporated by reference to Exhibit 10.1 to Registrant’s Annual Report on Form 10-K filed on April 15, 2005)
10.2  1999 UK Approved Stock Option Sub Plan of the Registrant (1) (incorporated by reference to Exhibit 10.7 to Registration Statement on Form S-1 (Registration No. 333-32174) filed on March 10, 2000)
10.3  Employee Stock Purchase Plan of the Registrant (incorporated by reference to Exhibit 4(b) to Registration Statement on Form S-8 (Registration No. 333-71866) filed on October 19, 2001)
10.4  Employment Agreement, dated April 1, 2000, by and between the Registrant and ColinCollin J. D'Silva (1) 10.4 D’Silva (incorporated by reference to Exhibit 10.8 to Registration Statement on Form S-1 (Registration No. 333-32174) filed on March 10, 2000)
10.5  Amendment No. 1 to the Employment Agreement, effective March 1, 2000, by and between Transgenomic, Inc. and Collin D’Silva (incorporated by reference to Exhibit 10.9 of the Registrant’s Quarterly Report on Form 10-Q filed on May 17, 2004)
10.6  Employment Agreement, effective July 31, 2004, by and between Transgenomic, Inc. and Michael A. Summers (incorporated by reference to Exhibit 10.11 to Registrant’s Quarterly Report on Form 10-Q filed on November 15, 2004)
10.7  Employment Agreement, dated April 1, 2000,January 22, 2002, between the Registrant and William P. Rasmussen (2) 10.5 Employment Agreement, dated March 4, 2000, between the Registrant and Douglas T. Gjerde (1) 10.6 Employment Agreement, dated November 16, 1998, between the Registrant and William B. Walker (1) 10.7 Letter Agreement, dated February 18, 2000, between the Registrant and Gregory J. Duman (1) Keith A. Johnson (incorporated by reference to Exhibit 10.1 to Registrant’s Quarterly Report on Form 10-Q filed on May 14, 2002)
10.8  License Agreement, dated September 1, 1994, between Registrant and Professor Dr. Gunther Bonn, et. al. and Amendment thereto, dated March 14, 1997+ (1) 1997 (incorporated by reference to Exhibit 10.14 to Registration Statement on Form S-1 (Registration No. 333-32174) filed on March 10, 2000)

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10.9  License Agreement, dated August 20, 1997, between the Registrant and Leland Stanford Junior University+ (1) University (incorporated by reference to Exhibit 10.15 to Registration Statement on Form S-1 (Registration No. 333-32174) filed on March 10, 2000)
10.10License Agreement, dated December 1, 1989, between Cruachem Holdings Ltd. (a wholly-owned subsidiary of the Registrant) and Millipore Corporation (incorporated by reference to Exhibit 10.13 to Registrant’s Annual Report on Form 10-K filed on March 25, 2002)
10.11Sublicense Agreement, dated October 1, 1991, between Cruachem Holdings Ltd. (a wholly-owned subsidiary of the Registrant) and Applied Biosystems, Inc. (incorporated by reference to Exhibit 10.14 to Registrant’s Annual Report on Form 10-K filed on March 25, 2002)
10.12Missives, dated May 17, 2002, between Cruachem Limited (a wholly-owned subsidiary of the Registrant) and Robinson Nugent (Scotland) Limited (incorporated by reference to Exhibit 10.1 to Registrant’s Quarterly Report on Form 10-Q filed on August 14, 2002)
10.13License Amendment Agreement, dated June 2, 2003, by and between Geron Corporation and the Registrant (incorporated by reference to Exhibit 10.2 to Registrant’s Quarterly Report on Form 10-Q filed on August 12, 2003)
10.14Supply Agreement, dated January 1, 2000, between the Registrant and Hitachi Instruments+ (1) 10.11 LeaseInstruments (incorporated by reference to Exhibit 10.16 to Registration Statement on Form S-1 (Registration No. 333-32174) filed on March 10, 2000)
10.15Form of Securities Purchase Agreement dated November 2, 1998,by and between the Registrant and Westlake Development Company, Inc. (1) 10.12 Leasevarious counterparties, dated August 27, 2003 (incorporated by reference to Exhibit 10 to the Registrant’s Report on Form 8-K filed on August 29, 2003)
10.16Securities Purchase Agreement dated May 15, 1996, between Interaction Chromatography Inc.by and Westlake Development Co., Inc. (1) 10.13 Business Property Lease, dated April 20, 2000, between the Registrant and Todd Smith (2) 10.14 $6,693,772 Promissory Note,Geron Corporation, dated July 21, 2000, from SD Acquisition, Inc.June 2, 2003 (incorporated by reference to Exhibit 10.0 to Amendment No. 3 to Registration Statement on Form S-3 (Registration No. 333-108319) as filed on October 14, 2003)
10.17Security Agreement by and between the Registrant and Laurus Master Fund, Ltd., dated December 3, 2003 (incorporated by reference to Exhibit 10.1 to the Registration Statement on Form 10-QS-3 of the Registrant for(Registration No. 333-111442) filed on December 22, 2003)
10.18Amendment to Security Agreement and Related Documents by and between the quarter endedRegistrant and Laurus Master Fund, Ltd., dated August 31, 2002 (incorporated by reference to Exhibit 10.2 to the Registration Statement on Form S-3 (Registration No. 333-118970) as filed on September 30, 2000 (file no. 000-30975)). 21 Subsidiaries14, 2004)
10.19Secured Revolving Note by and between the Registrant and Laurus Master Fund, Ltd., dated December 3, 2003 (incorporated by reference to Exhibit 10.2 to the Registration Statement on Form S-3 of the Registrant (3) (Registration No. 333-111442) filed on December 22, 2003)
10.20Secured Convertible Minimum Borrowing Note by and between the Registrant and Laurus Master Fund, Ltd., dated December 3, 2003 (incorporated by reference to Exhibit 10.3 to the Registration Statement on Form S-3 of the Registrant (Registration No. 333-111442) filed on December 22, 2003)

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10.21Secured Convertible Minimum Borrowing Note Series B by and between the Registrant and Laurus Master Fund, Ltd., dated December 3, 2003, as amended on April 15, 2004 (incorporated by reference to the Registration Statement of the Registrant (Registration No. 333-114661) filed on April 21, 2004)
10.22Common Stock Purchase Warrant by and between the Registrant and Laurus Master Fund, Ltd., dated December 3, 2003 (incorporated by reference to Exhibit 10.4 to the Registration Statement on Form S-3 of the Registrant (Registration No. 333-111442) filed on December 22, 2003)
10.23Registration Rights Agreement by and between the Registrant and Laurus Master Fund, Ltd., dated December 3, 2003 (incorporated by reference to Exhibit 10.5 to the Registration Statement on Form S-3 of the Registrant (Registration No. 333-111442) filed on December 22, 2003)
10.24Common Stock Purchase Warrant by and between the Registrant and TN Capital Equities, Ltd., dated December 3, 2003 (incorporated by reference to Exhibit 10.6 to the Registration Statement on Form S-3 of the Registrant (Registration No. 333-111442) filed on December 22, 2003)
10.25Securities Purchase Agreement by and between the Registrant and Laurus Master Fund, Ltd., dated February 19, 2004, as amended on April 15, 2004 (incorporated by reference to Exhibit 10.1 to the Registration Statement on Form S-3 of the Registrant (Registration No. 333-114661) filed on April 21, 2004)
10.26Amendment to Securities Purchase Agreement and Related Document by and between the Registrant and Laurus Master Fund, Ltd., dated August 31, 2004 (incorporated by reference to Exhibit 10.1 to the Registration Statement on Form S-3 (Registration No. 333-118970) as filed on September 14, 2004)
10.27Secured Convertible Term Note by and between the Registrant and Laurus Master Fund, Ltd., dated February 19, 2004, as amended on April 15, 2004 (incorporated by reference to Exhibit 10.2 to the Registration Statement on Form S-3 of the Registrant (Registration No. 333-114661) filed on April 21, 2004)
10.28Common Stock Purchase Warrant by and between the Registrant and Laurus Master Fund, Ltd., dated February 19, 2004, as amended on April 15, 2004 (incorporated by reference to Exhibit 10.3 to the Registration Statement on Form S-3 of the Registrant (Registration No. 333-114661) filed on April 21, 2004)
10.29Registration Rights Agreement by and between the Registrant and Laurus Master Fund, Ltd., dated February 19, 2004 (incorporated by reference to Exhibit 10.4 to the Registration Statement on Form S-3 of the Registrant (Registration No. 333-114661) filed on April 21, 2004)
10.30Common Stock Purchase Warrants by and between the Registrant and TN Capital Equities, Ltd., dated March 1, 2004 (incorporated by reference to Exhibit 10.2 to the Registration Statement on Form S-3 of the Registrant (Registration No. 333-114661) filed on April 21, 2004)

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10.31Common Stock Purchase Warrant by and between the Registrant and Laurus Master Fund, Ltd., dated August 31, 2004 (incorporated by reference to Exhibit 10.3 to the Registration Statement on Form S-3 (Registration No. 333-118970) as filed on September 14, 2004)
10.32Engagement Agreement by and between the Registrant and Goldsmith, Agio, Helms Securities, Inc., dated March 19, 2004, as amended August 12, 2004 (incorporated by reference to Exhibit 10.10 to Registrant’s Quarterly Report on Form 10-Q filed on November 15, 2004)
10.33Form of Securities Purchase Agreement by and between the Registrant and various counterparties dated September 22, 2005 (incorporated by reference to Exhibit 10.1 to Registrant’s Quarterly Report on Form 10-Q filed on November 14, 2005)
23.1  Consent of Deloitte & Touche LLP (3)
23.2  Consent of Kutak Rock LLP (included in Exhibit 5) 5.1)
24     Powers of Attorney (3) 27 Financial Data Schedule (included on page II-8 hereto)

Item 17.Undertakings

We undertake:

(1) To file, during any period in which offers or sales are being made, a post-effective amendment to this registration statement:

(i) to include any Prospectus required by section 10(a)(3) - ------------------------ (1) This Exhibitof the Securities Act of 1933;

(ii) to reflect in the Prospectus any facts or events arising after the effective date of this registration statement (or the most recent post-effective amendment thereof) which, individually or in the aggregate, represent a fundamental change in the information set forth in this registration statement;

(iii) to include any material information with respect to the plan of distribution not previously disclosed in this registration statement or any material change to such information in this registration statement (notwithstanding the foregoing, any increase or decrease in volume of securities (if the total dollar value of securities offered would not exceed that which was registered) and any deviation from the low or high end of the estimated maximum offering range may be reflected in the form of a Prospectus filed with the Commission pursuant to Rule 424(b) if, in the aggregate, the changes in volume and price represent no more than a 20% change in the maximum aggregate offering price set forth in the “Calculation of Registration Fee” in this registration statement); provided, however, that the undertakings set forth in paragraphs (i) and (ii) above do not apply if the information required to be included in a post-effective amendment by those paragraphs is contained in periodic reports filed by the Registrant pursuant to section 13 or section 15(d) of the Securities Exchange Act of 1934 that are incorporated by reference in this registration statement.

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(2) That, for the purpose of determining any liability under the Securities Act of 1933, each such post-effective amendment shall be deemed to be a new registration statement relating to the securities offered therein, and the offering of such securities at that time shall be deemed to be the initial bona fide offering thereof.

(3) To remove from registration by means of a post-effective amendment any of the securities being registered which remain unsold at the termination of the offering.

(4) That, for purposes of determining any liability under the Securities Act of 1933, each filing of the Registrant’s annual report pursuant to section 13(a) or section 15(d) of the Securities Exchange Act of 1934 that is incorporated by reference in this registration statement shall be deemed to be a new registration statement relating to the Registration Statementsecurities offered therein, and the offering of such securities at that time shall be deemed to be the initial bona fide offering thereof.

(5) Insofar as indemnification for liabilities arising under the Securities Act of 1933 may be permitted to directors, officers and controlling persons of the Registrant (Registration No. 333-32174), which was filed on March 10, 2000. (2) This Exhibit is incorporated by referencepursuant to the Registration Statementprovisions referred to in Item 15 (other than the insurance policies referred to therein), or otherwise, the Registrant has been advised that in the opinion of the Securities and Exchange Commission such indemnification is against public policy as expressed in the Securities Act of 1933 and is, therefore, unenforceable. In the event that a claim for indemnification against such liabilities (other than the payment by the Registrant of expenses incurred or paid by a director, officer or controlling person of the Registrant (Registration No. 333-32174), as amended by Amendment 1, which amendment was filed on May 17, 2000. II-1 (3) This Exhibitin the successful defense of any action, suit or proceeding) is incorporated by reference to the Registration Statement ofasserted against the Registrant (Registration No. 333-51960), which was filed on December 15, 2000. + Certain confidential portionsby such director, officer or controlling person in connection with the securities being registered, the Registrant will, unless in the opinion of this Exhibit were omitted by means of redacting a portion ofits counsel the text (the "Mark"). This Exhibitmatter has been filed separately withsettled by controlling precedent, submit to a court of appropriate jurisdiction the Secretary of the Commission without the Mark pursuant to the Registrant's Application Requesting Confidential Treatment under Rule 406 ofquestion whether such indemnification by it is against public policy as expressed in the Securities Act. (b) Financial Statement Schedules: All financial statement schedules have been omitted becauseAct of 1933 and will be governed by the required information is included in the consolidated financial statementsfinal adjudication of the Registrant or related notes thereto. II-2 such issue.

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SIGNATURES

Pursuant to the requirements of the Securities Act of 1933, the Registrant has duly caused Amendment No. 1 to this Registration Statement to be signed on its behalf by the undersigned, thereunto duly authorized, in the City of Omaha, and State of Nebraska, on the 10th day of January, 2001. November 28, 2005.

TRANSGENOMIC, INC.

By: /s/ COLLIN/s/    COLLIN J. D'SILVA ----------------------------------------- D’SILVA        
Collin J. D'Silva CHIEF EXECUTIVE OFFICER D’Silva,
President and Chief Executive Officer

POWER OF ATTORNEY

KNOW ALL MEN BY THESE PRESENTS, that the undersigned, whose signatures appear below, hereby constitute and appoint Collin J. D’Silva and Michael Summers, or either of them, as their true and lawful attorney-in-fact and agent, with full power of substitution and resubstitution, for them and in their name, place and stead, in any and all capacities, to sign any and all amendments (including post-effective amendments) to this registration statement, and to file the same, with exhibits thereto, and other documents in connection therewith, with the Securities and Exchange Commission, granting unto said attorney-in-fact and agent full power and authority to do and perform each and every act and thing requisite and necessary to be done, as full and to all intents and purposes as he might or could do in person, hereby ratifying and confirming all that said attorney-in-fact and agent, or his substitute or substitutes, may lawfully do or cause to be done by virtue hereof.

Pursuant to the requirements of the Securities Act of 1933, Amendment No. 1 to this Registration Statement has been signed below by the following persons in the capacities indicated as ofand on the 10th day of January, 2001. dates indicated.

SIGNATURE TITLE --------- ----- /s/ COLLIN

Date: November 28, 2005

By:/s/    COLLIN J. D'SILVA Chairman of the Board, Director andD’SILVA        
Collin J. D’Silva,
President, Chief ------------------------------------------- Executive Officer and
Director (Principal Executive Collin J. D'Silva Officer) /s/ WILLIAM P. RASMUSSEN -------------------------------------------

Date: November 28, 2005

By:/s/    MICHAEL A. SUMMERS        
Michael A. Summers
Chief Financial Officer (Principal
(Principal Financial William P. Rasmussen Officer) /s/ STEPHEN F. DWYER* -------------------------------------------

Date: November 28, 2005

By:/s/    GREGORY J. DUMAN        
Gregory J. Duman,
Director Stephen F. Dwyer /s/ DOUGLAS T. GJERDE* ------------------------------------------- Director Douglas T. Gjerde, Ph.D. /s/ JEFFREY SKLAR* ------------------------------------------- Director

Date: November 28, 2005

By:/s/    JEFFREY SKLAR        
Jeffrey Sklar, M.D., Ph.D. /s/ ROLAND
Director

Date: November 28, 2005

By:/s/    ROLAND J. SANTONI* ------------------------------------------- Director SANTONI        
Roland J. Santoni, /s/ GREGORY J. DUMAN* -------------------------------------------
Director Gregory J. Duman /s/ PARAG SAXENA* ------------------------------------------- Director

Date: November 28, 2005

By:/s/    PARAG SAXENA        
Parag Saxena,
Director

Date: November 28, 2005

By:/s/    GREGORY SLOMA        
Gregory Sloma,
Director
*By Collin J. D'Silva, as attorney-in-fact /s/ COLLIN J. D'SILVA -------------------------------------- Collin J. D'Silva ATTORNEY-IN-FACT FOR THE INDIVIDUALS AS INDICATED.
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