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Exhibit 23.1
CONSENT OF INDEPENDENT REGISTERED PUBLIC ACCOUNTING FIRM
We consent to the incorporation by reference in Registration Statements Nos.333-194490 and 333-203179 on Form S-8 and Nos. 333-203180 and 333-208651 on Form S-3 of our report dated March 14, 2016, relating to the consolidated financial statements of Aquinox Pharmaceuticals, Inc. appearing in this Annual Report onForm 10-K of Aquinox Pharmaceuticals, Inc. for the year ended December 31, 2015.
/s/ Deloitte LLP
Chartered Professional Accountants
Vancouver, Canada
March 14, 2016