UNITED STATES
                         SECURITIES AND EXCHANGE COMMISSION
                               Washington, D.C. 20549

                                      FORM 10-Q


           (X)    QUARTERLY REPORT UNDER SECTION 13 OR 15(d) OF THE 
                            SECURITIES EXCHANGE ACT OF 1934

                   For the quarterly period ended December 31, 1995

                                         OR

            (  )   TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d)
                       OF THE SECURITIES EXCHANGE ACT OF 1934

                          Commission File Number 0-15609

                            AGOURON PHARMACEUTICALS, INC.
             (Exact name of registrant as specified in its charter)


            CALIFORNIA                          33-0061928
 (State or other jurisdiction of   (I.R.S. employer identification no.)
  incorporation or organization)


        10350 NORTH TORREY PINES ROAD, LA JOLLA, CALIFORNIA  92037-1020
           (Address and zip code of principal executive offices)

                                (619) 622-3000
            (Registrant's telephone number, including area code)

                                       NONE
                 (Former name, former address and former fiscal year,
                            if changed since last report.)

Indicate by check mark whether the registrant (1) has filed all reports 
required to be filed by Section 13 or 15(d) of the Securities Exchange 
Act of 1934 during the preceding 12 months (or for such shorter period 
that the registrant was required to file such reports), and (2) has 
been subject to such filing requirements for the past 90 days:  

                               Yes __X__  No ____


Indicate the number of shares outstanding of each of the issuer's 
classes of common stock, as of the latest practicable date: 
Approximately 10,525,000 shares of the Company's Common Stock, no par 
value, were outstanding as of January 26, 1996. 





                          AGOURON PHARMACEUTICALS, INC.

                                        INDEX
 
                                                              Page No.

Part I.     Financial Information

Item 1.     Financial Statements

     Balance Sheet -                                              3    
              December 31, 1995 and June 30, 1995

     Statement of Operations - Three and Six                      4
              Months Ended December 31, 1995 and 1994

     Statement of Cash Flows-                                     5 
              Six Months Ended December 31, 1995 and 1994

     Notes to Financial Statements                                6

Item 2.     Management's Discussion and Analysis of Financial     7
              Condition and Results of Operations


Part II.    Other Information      

Item 1.     Legal Proceedings                                     9

Item 2.     Changes in Securities                                 9

Item 3.     Defaults Upon Senior Securities                       9

Item 4.     Submission of Matters to a Vote of Security Holders   9

Item 5.     Other Information                                     9

Item 6.     Exhibits and Reports on Form 8-K                      9

            Signature                                            10



PART I.  FINANCIAL INFORMATION

Item 1.  Financial Statements

                           AGOURON PHARMACEUTICALS, INC.
                                  BALANCE SHEET
                             (Dollars in thousands)

                                                   December 31,     June 30,
                                                          1995         1995
                                                   (unaudited)
ASSETS

Current assets:
     Cash and cash equivalents                       $  10,629     $  4,358
     Short-term investments                             98,134       15,886
     Accounts receivable                                   214          344
     Other current assets                                  919          871
                                                      --------     --------
     Total current assets                              109,896       21,459

Property and equipment, net of accumulated
  depreciation and amortization of $12,512 and $11,344 
                                                          5,441        5,638

                                                     $  115,337    $  27,097
                                                       --------     --------
                                                       --------     --------
LIABILITIES AND STOCKHOLDERS' EQUITY

Current liabilities:
     Accounts payable                                $    9,151    $   5,426
     Accrued liabilities                                    945          683
     Deferred revenue                                    17,050        5,745
     Current portion of long-term debt                      506          768
                                                       --------     --------
     Total current liabilities                           27,652       12,622
                                                       --------     --------
Long-term liabilities:
     Long-term debt, less current portion                   363          580
     Accrued rent                                         1,281        1,304
                                                       --------     --------
     Total long-term liabilities                          1,644        1,884
                                                       --------     --------
                                                       --------     --------
Stockholders' equity:
     Common stock, no par value, 75,000,000 shares
       authorized, 10,486,662 and 7,359,282 shares
       issued and outstanding                           156,218       76,113
     Accumulated deficit                                (70,177)     (63,522)
                                                        --------    --------
     Total stockholders' equity                          86,041       12,591 
                                                        --------    --------
                                                     $  115,337    $  27,097
                                                        --------    --------
                                                        --------    --------



                   See accompanying notes to financial statements.



                              AGOURON PHARMACEUTICALS, INC.
                                 STATEMENT OF OPERATIONS
                                      (Unaudited)
                  (Dollars in thousands, except per share amounts)



                                  Three Months Ended       Six Months Ended
                                      December 31,            December 31,

                                   1995       1994         1995       1994

Revenues:
   Contracts                   $  9,592   $  6,501     $ 20,555  $  12,336
   Interest                       1,597        313        1,994        642
                             ----------  ---------    ---------  ---------
                                 11,189      6,814       22,549     12,978
                             ----------  ---------    ---------  ---------
Costs and expenses:
  Research and development       14,188      7,037       26,716     15,022
  General and administrative      1,092        999        2,341      1,865
     Interest                        41         54          147        106
                             ----------  ---------    ---------  ---------
                                 15,321      8,090       29,204     16,993
                             ----------  ---------    ---------  ---------
Net loss                      $  (4,132) $  (1,276)   $  (6,655) $  (4,015)
                             ----------  ---------    ---------  ---------
                             ----------  ---------    ---------  ---------
Net loss per common share     $    (.40) $    (.18)   $    (.73) $    (.55)
                             ----------  ---------    ---------  ---------
                             ----------  ---------    ---------  ---------

Shares used in computing net loss
  per common share           10,432,000  7,279,000    9,076,000  7,279,000
                             ----------  ---------    ---------  ---------








                   See accompanying notes to financial statements.



                          AGOURON PHARMACEUTICALS, INC.
                             STATEMENT OF CASH FLOWS
                                  (Unaudited)
                            (Dollars in thousands)


                                                        Six Months Ended 
                                                           December 31,
                                                      1995           1994
                                                     ------         ------
Cash flows from operating activities:
  Cash received from contracts                    $  31,990       $  14,071
  Cash paid to suppliers, employees and 
    service providers                                (24,039)        (13,901)
  Interest received                                   1,994             642
  Interest paid                                        (147)           (106)
                                                    -------         -------
  Net cash provided (used) by operating 
    activities                                         9,798             706
                                                    -------         -------
Cash flows from investing activities:
  Net (increase) decrease in short-term 
    investments                                      (82,248)          4,918
  Expenditures for property and equipment              (905)         (1,624)
                                                    -------         -------
  Net cash provided (used) by investing 
    activities                                       (83,153)          3,294
                                                    -------         -------
Cash flows from financing activities:     
  Net proceeds from issuance of common stock         80,105             136
  Principal payments under equipment leases            (218)           (302)
  Increase (decrease) in long-term debt, net           (261)            101
                                                    -------         -------
  Net cash provided (used) by financing 
    activities                                        79,626             (65)


Net increase (decrease) in cash and cash
  equivalents                                          6,271           3,935

Cash and cash equivalents at beginning of 
  period                                               4,358           2,104
                                                    -------         -------
Cash and cash equivalents at end of period        $  10,629        $  6,039
                                                    -------         -------
                                                    -------         -------
Reconciliation of net loss to net cash 
  provided (used) by operating activities:
  Net loss                                        $  (6,655)      $  (4,015)
  Depreciation and amortization                       1,102           1,230
  Net (increase) decrease in accounts 
   receivable and other current assets                    82              (7)
  Net increase (decrease) in accounts 
   payable, accrued liabilities, deferred 
   revenue and accrued rent                           15,269           3,498
                                                    -------         -------
  Net cash provided (used) by operating 
    activities                                      $  9,798          $  706
                                                    -------         -------
                                                    -------         -------

                   See accompanying notes to financial statements.







                         AGOURON PHARMACEUTICALS, INC.
                        NOTES TO FINANCIAL STATEMENTS
                                 (Unaudited)

1.     Nature of Operations

Agouron Pharmaceuticals, Inc. is involved in the research and 
development of novel synthetic drugs for the treatment of cancer, viral 
diseases and immuno-inflammatory disease.  The Company intends to 
commercialize any successfully developed products through its own 
direct sales and marketing activities in certain markets or, when 
appropriate, through manufacturing and marketing relationships with 
other pharmaceutical companies.

2.     Financial Statements and Estimates

The balance sheet as of December 31, 1995 and the statements of 
operations and cash flows for the three-month and six-month periods 
ended December 31, 1995 and 1994 have been prepared by the Company and 
have not been audited.  Such financials, in the opinion of management, 
include all adjustments (consisting only of normal, recurring accruals) 
necessary to present fairly the financial position, results of 
operations and cash flows for all periods presented.  These financial 
statements should be read in conjunction with the financial statements 
and notes thereto included in the Company's June 30, 1995 Annual Report 
on Form 10-K.  Interim operating results are not necessarily indicative 
of operating results for the full year.

The preparation of financial statements in conformity with generally 
accepted accounting principles requires management to make estimates 
and assumptions that affect the reported amounts of assets, 
liabilities, revenues and expenses and related disclosures as of the 
date of the financial statements.  Actual results could differ from 
such estimates.

At December 31, 1995, it has been assumed that the existing 
collaborations with Japan Tobacco Inc. ("JT") will continue in 
accordance with their agreement terms.  As such, approximately 
$16,502,000 of cash received from JT has been classified as deferred 
contract revenue and is being recognized as revenue on a prospective 
basis as collaborative program expenses are incurred.  Should any of 
the underlying collaborations be terminated in advance of their 
contract terms, any deferred contract revenues related to such 
collaborations would immediately be recognized as revenue by the 
Company.

3.     Short-term Investments

Included in short-term investments at December 31, 1995 and June 30, 
1995 is $1,444,000 and $172,000 of accrued interest receivable. 
Included in short-term investments at December 31, 1995 is $400,000 
which has been pledged as collateral in conjunction with certain 
long-term debt obligations.

At December 31, 1995, the Company's short-term investments are 
generally available for sale and are carried at amortized cost which 
approximates market.  These investments, consisting principally of 
United States government securities (78%) and corporate obligations 
 (19%), have average maturities of less than one year.

4.     Certain Concentrations

A significant portion of the Company's research and development 
expenditures are related to programs funded in whole or in part by JT. 
The termination of such collaborative research and development programs could
result in the absence of any prospective funding for such programs 
and the need to evaluate the level of future program spending, if any. 



Item 2.     Management's Discussion and Analysis of Financial Condition
            and Results of Operations

When used in this discussion, the words "believes", "anticipated" and 
similar expressions are intended to identify forward-looking 
statements.  Such statements are subject to certain risks and 
uncertainties which could cause actual results to differ materially 
from those projected.  See "Important Factors Regarding Forward-Looking 
Statements" attached hereto as Exhibit 99 and incorporated herein by 
reference.  Readers are cautioned not to place undue reliance on these 
forward-looking statements which speak only as of the date hereof.  The 
Company undertakes no obligation to publicly release the result of any 
revisions to these forward-looking statements which may be made to 
reflect events or circumstances after the date hereof or to reflect the 
occurrence of unanticipated events.

Financial Condition

The Company relies principally on equity financings and corporate 
collaborations to fund its operations and capital expenditures.  At 
December 31, 1995, due principally to the receipt of a $24,000,000 
milestone payment from Japan Tobacco, Inc. ("JT") in August and the net 
proceeds of approximately $78,589,000 from a public offering of common 
stock in September, the Company had cash, cash equivalents and 
short-term investments of approximately $108,763,000.  Management 
believes that its present capital resources, plus the funding from 
certain existing collaborative relationships, will be sufficient to 
meet its working capital needs at least through fiscal 1997.  The 
Company may require additional long-term financing to meet the 
operating needs of fiscal 1998 and beyond.  The Company will consider 
various financing vehicles to meet such needs including collaborative 
arrangements and public offerings or private placements of Company 
common or preferred stock.  If such vehicles are not available, the 
Company may be required to delay or eliminate expenditures for certain 
of its products or to license third parties to commercialize products 
or technologies that the Company would otherwise seek to develop 
itself.

Results of Operations

The Company is engaged in the research and development of human 
pharmaceuticals utilizing protein structure-based drug design.  Such 
research and development has been funded from the Company's 
equity-derived working capital and through various collaborative 
arrangements.  The Company's net operating losses reflect primarily the 
result of its independent research and continued increasing investment 
in clinical development activities concentrated on the Company's lead 
compounds in cancer and AIDS.  As product sales may not begin prior to 
calendar 1997 and certain programs are expanding their preclinical and 
clinical development activities, it is anticipated that net operating 
losses will continue and possibly increase through fiscal 1997.

The increase in the net losses for the three and six months ended 
December 31, 1995 compared to the year-earlier periods is due 
principally to the Company's commitment to support expanding clinical 
activities and establish a commercial infrastructure associated with 
the Company's two leading product candidates.  These spending increases 
were partially offset by increased contract revenues.

Contract revenues in the current three- and six-month periods have 
increased compared to the year earlier periods due mainly to an 
anti-HIV collaboration with JT initiated in December 1994. Interest 
income has increased significantly from the prior-year periods due to a 
higher average investment portfolio balance resulting from the 
previously described public offering and milestone payment.  Partially 
offsetting these revenue increases on a quarter-to-quarter and 
year-to-year basis was the absence of funding from JT due to the 
cancellation of a collaborative research program with JT in January 
1995.

Research and development costs and expenses increased from the 
prior-year periods due generally to increasing average research and 
development staff levels (approximately 19%) and staff-related 
expenditures, including occupancy, and significantly increased 
expenditures for human clinical trial activities associated with the 
Company's leading product development programs, THYMITAQ (TM) and 
VIRACEPT (TM).

The increase in general and administrative costs and expenses in the 
current three- and six-month periods is due chiefly to increasing 
average staff levels (approximately 19% and 24%, respectively) and 
staff related expenditures and certain costs associated with a growing 
sales and marketing infrastructure.

Interest expense in the current-year periods is generally decreasing as 
the level of debt and capital base obligations decline.  Partially or 
wholly offsetting these declines are the exercise costs associated with  
certain lease buy-out options.

PART II.     OTHER INFORMATION

Item 1.     Legal Proceedings:  The Company is involved in certain 
            legal or administrative proceedings generally incidental to its
            normal business activities.  While the outcome of any such 
            proceedings cannot be accurately predicted, the Company does not
            believe the ultimate resolution of any such existing matters 
            should have a material adverse effect on its financial position.

Item 2.     Changes in Securities:  None.

Item 3.     Defaults Upon Senior Securities:  None.

Item 4.     Submission of Matters to a Vote of Security Holders:  The 
            Company held its Annual Meeting of Shareholders on November 2,
            1995 and proxies for such meeting were solicited pursuant to
            Regulation 14A. There was no solicitation in opposition to
            management's nominees for directors as listed in the proxy 
            statement and all such nominees were elected.  The names of 
            directors elected at the meeting are:  John N. Abelson, Patricia
            M. Cloherty, A. E. Cohen, Gary E. Friedman, Michael E. Herman, 
            Irving S. Johnson, Peter Johnson, Antonie T. Knoppers and Melvin 
            I. Simon.  Each director received 8,503,383 votes in favor of 
            his or her election.

            In addition, the shareholders voted on two other proposals as 
            listed in the proxy statement.  The proposals and the results of
            the voting are summarized below.

            1.     The shareholders approved a proposal to amend the 
                   Company's 1990 Stock Option Plan to increase the number of 
                   shares available for grant by 1,000,000 shares.  The vote 
                   was 4,744,448 for, 1,289,330 against, 31,941 abstained and 
                   2,452,219 not voted.

            2.     The shareholders ratified the selection of Price
                   Waterhouse as certified public accountants.  The vote was
                   8,499,789 for, 6,315 against and 11,834 abstained.

Item 5.     Other Information:  None.

Item 6.     Exhibits and Reports on Form 8-K:

            a.     Exhibits:

                   10.33     1990 Stock Option Plan (restated November 2, 
                             1995).
     
                   10.58     First Amendment to Development and License 
                             Agreement effective December 1, 1995 between 
                             Japan Tobacco Inc. and the Company.  
                             (Confidential treatment has been requested for
                             portion of this agreement pursuant to an 
                             application dated January 31, 1996.  The 
                             underlying agreement was filed as Exhibit 10.54 
                             to Form 10-Q for the period ended December 31,
                             1994, and portions thereof receive confidential
                             treatment pursuant to an order of the Securities 
                             and Exchange Commission dated June 28, 1995.)

                      27     Financial Data Schedule.  (Exhibit 27 is 
                             submitted as an exhibit only in the electronic 
                             format of this Quarterly Report on Form 10-Q 
                             submitted to the Securities and Exchange 
                             Commission.)

                      99     Important Factors Regarding Forward-Looking
                             Statements. 

              b.     Reports on Form 8-K:  None. 

                                  SIGNATURE

     Pursuant to the requirements of the Securities Exchange Act of 1934, the 
registrant has duly caused this report to be signed on its behalf by the 
undersigned thereunto duly authorized.


                                  AGOURON PHARMACEUTICALS, INC.




Date:  January 31, 1996           /s/ Steven S. Cowell     
                                  ---------------------------------
                                  Steven S. Cowell
                                  Vice President, Finance and Chief Financial
                                  Officer and Chief Accounting Officer