UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q (X) QUARTERLY REPORT UNDER SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the quarterly period ended March 31, 1996 OR ( ) TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 Commission File Number 0-15609 AGOURON PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) CALIFORNIA 33-0061928 (State or other jurisdiction of (I.R.S. employer identification no.) incorporation or organization) 10350 NORTH TORREY PINES ROAD, LA JOLLA, CALIFORNIA 92037-1020 (Address and zip code of principal executive offices) (619) 622-3000 (Registrant's telephone number, including area code) NONE (Former name, former address and former fiscal year, if changed since last report.) Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days: Yes __X__ No ____ Indicate the number of shares outstanding of each of the issuer's classes of common stock, as of the latest practicable date: Approximately 10,627,000 shares of the Company's Common Stock, no par value, were outstanding as of April 19, 1996. AGOURON PHARMACEUTICALS, INC. INDEX Page No. Part I. Financial Information Item 1. Financial Statements Balance Sheet - 3 March 31, 1996 and June 30, 1995 Statement of Operations - Three and Nine 4 Months Ended March 31, 1996 and 1995 Statement of Cash Flows - 5 Nine Months Ended March 31, 1996 and 1995 Notes to Financial Statements 6 Item 2. Management's Discussion and Analysis of Financial 7 Condition and Results of Operations Part II. Other Information Item 1. Legal Proceedings 9 Item 2. Changes in Securities 9 Item 3. Defaults Upon Senior Securities 9 Item 4. Submission of Matters to a Vote of Security Holders 9 Item 5. Other Information 9 Item 6. Exhibits and Reports on Form 8-K 9 Signature 10 PART I. FINANCIAL INFORMATION Item 1. Financial Statements AGOURON PHARMACEUTICALS, INC. BALANCE SHEET (Dollars in thousands) March 31, June 30, 1996 1995 (unaudited) ASSETS Current assets: Cash and cash equivalents $ 14,547 $ 4,358 Short-term investments 90,109 15,886 Accounts receivable 350 344 Other current assets 2,242 871 _________ _________ Total current assets 107,248 21,459 Property and equipment, net of accumulated depreciation and amortization of $13,035 and $11,344 5,943 5,638 _________ _________ $ 113,191 $ 27,097 ========= ========= LIABILITIES AND STOCKHOLDERS' EQUITY Current liabilities: Accounts payable $ 8,752 $ 5,426 Accrued liabilities 1,075 683 Deferred revenue 24,763 5,745 Current portion of long-term debt 542 768 _________ _________ Total current liabilities 35,132 12,622 _________ _________ Long-term liabilities: Long-term debt, less current portion 606 580 Accrued rent 1,257 1,304 _________ _________ Total long-term liabilities 1,863 1,884 _________ _________ Stockholders' equity: Common stock, no par value, 75,000,000 shares authorized, 10,622,800 and 7,359,282 shares issued and outstanding 157,379 76,113 Accumulated deficit (81,183) (63,522) _________ _________ Total stockholders' equity 76,196 12,591 _________ _________ $ 113,191 $ 27,097 ========= ========= See accompanying notes to financial statements. AGOURON PHARMACEUTICALS, INC. STATEMENT OF OPERATIONS (Unaudited) (Dollars in thousands, except per share amounts) Three Months Ended Nine Months Ended March 31, March 31, 1996 1995 1996 1995 Revenues: Contract $ 6,910 $ 6,949 $ 27,465 $ 19,285 Interest 1,526 336 3,520 978 _________ _________ _________ _________ 8,436 7,285 30,985 20,263 _________ _________ _________ _________ Costs and expenses: Research and development 17,064 9,330 43,780 24,352 General and administrative 2,338 1,162 4,679 3,027 Interest 40 63 187 169 _________ _________ _________ _________ 19,442 10,555 48,646 27,548 _________ _________ _________ _________ Net loss $ (11,006) $ (3,270) $ (17,661) $ (7,285) ========== ========= ========= ========= Net loss per common share $ (1.04) $ (.45) $ (1.84) $ (1.00) ========== ========= ========= ========= Shares used in computing net loss per common share 10,571,000 7,300,000 9,574,000 7,286,000 ========== ========= ========= ========= See accompanying notes to financial statements. AGOURON PHARMACEUTICALS, INC. STATEMENT OF CASH FLOWS (Unaudited) (Dollars in thousands) Nine Months Ended March 31, 1996 1995 Cash flows from operating activities: Cash received from contracts $ 46,477 $ 21,018 Cash paid to suppliers, employees and service providers (44,419) (22,405) Interest received 3,520 978 Interest paid (187) (169) _________ _________ Net cash provided (used) by operating activities 5,391 (578) _________ _________ Cash flows from investing activities: Net (increase) decrease in short-term investments (74,223) 7,561 Expenditures for property and equipment (1,588) (1,749) _________ _________ Net cash provided (used) by investing activities (75,811) 5,812 _________ _________ Cash flows from financing activities: Net proceeds from issuance of common stock 81,266 245 Principal payments under equipment leases (304) (460) Increase (decrease) in long-term debt, net (353) (68) _________ _________ Net cash provided (used) by financing activities 80,609 (283) _________ _________ Net increase (decrease) in cash and cash equivalents 10,189 4,951 Cash and cash equivalents at beginning of period 4,358 2,104 _________ _________ Cash and cash equivalents at end of period $ 14,547 $ 7,055 ========= ========= Reconciliation of net loss to net cash provided(used) by operating activities: Net loss $ (17,661) $ (7,285) Depreciation and amortization 1,740 1,858 Net (increase) decrease in accounts receivable and other current assets (1,377) (53) Net increase (decrease) in accounts payable, accrued liabilities, deferred revenue and accrued rent 22,689 4,902 _________ _________ Net cash provided (used) by operating activities $ 5,391 $ (578) ========= ========= See accompanying notes to financial statements. AGOURON PHARMACEUTICALS, INC. NOTES TO FINANCIAL STATEMENTS (Unaudited) 1. Nature of Operations Agouron Pharmaceuticals, Inc. is involved in the research and development of novel synthetic drugs for the treatment of cancer, viral diseases and immuno- inflammatory disease. The Company intends to commercialize any successfully developed products through its own direct sales and marketing activities in certain markets or, when appropriate, through manufacturing and marketing relationships with other pharmaceutical companies. 2. Financial Statements and Estimates The balance sheet as of March 31, 1996 and the statements of operations and cash flows for the three-month and nine-month periods ended March 31, 1996 and 1995 have been prepared by the Company and have not been audited. Such financials, in the opinion of management, include all adjustments (consisting only of normal, recurring accruals) necessary to present fairly the financial position, results of operations and cash flows for all periods presented. These financial statements should be read in conjunction with the financial statements and notes thereto included in the Company's June 30, 1995 Annual Report on Form 10-K. Interim operating results are not necessarily indicative of operating results for the full year. The preparation of financial statements in conformity with generally accepted accounting principles requires management to make estimates and assumptions that affect the reported amounts of assets, liabilities, revenues and expenses and related disclosures as of the date of the financial statements. Actual results could differ from such estimates. At March 31, 1996, it has been assumed that the existing collaborations with Japan Tobacco Inc. ("JT") will continue in accordance with their agreement terms. As such, approximately $24,216,000 of cash received from JT has been classified as deferred contract revenue and is being recognized as revenue on a prospective basis as collaborative program expenses are incurred. Should any of the underlying collaborations be terminated in advance of their contract terms, any deferred contract revenues related to such collaborations would immediately be recognized as revenue by the Company. 3. Short-term Investments Included in short-term investments at March 31, 1996 and June 30, 1995 is $1,544,000 and $172,000 of accrued interest receivable. Included in short- term investments at March 31, 1996 is $400,000 which has been pledged as collateral for certain long-term debt obligations. At March 31, 1996, the Company's short-term investments are generally available for sale, are carried at amortized cost which approximates market, consist principally of United States government securities (70%) and corporate obligations (14%), and have average maturities of less than one year. 4. Statement of Cash Flows Non-cash financing activities were comprised of capital lease obligations of $457,000 and $17,000, respectively, in the nine-month periods ended March 31, 1996 and 1995. 5. Certain Concentrations A significant portion of the Company's research and development expenditures are related to programs funded in whole or in part by JT. The termination of such collaborative research and development programs could result in the absence of any prospective funding for such programs and the need to evaluate the level of future program spending, if any. Item 2. Management's Discussion and Analysis of Financial Condition and Results of Operations When used in this discussion, the words "believes", "anticipated" and similar expressions are intended to identify forward-looking statements. Such statements are subject to certain risks and uncertainties which could cause actual results to differ materially from those projected. See "Important Factors Regarding Forward-Looking Statements" attached as Exhibit 99 to the Company's quarterly report on Form 10-Q for the period ended December 31, 1995 and incorporated herein by reference. Readers are cautioned not to place undue reliance on these forward-looking statements which speak only as of the date hereof. The Company undertakes no obligation to publicly release the result of any revisions to these forward-looking statements which may be made to reflect events or circumstances after the date hereof or to reflect the occurrence of unanticipated events. Financial Condition The Company relies principally on equity financings and corporate collaborations to fund its operations and capital expenditures. At March 31, 1996, due principally to the receipt of a $24,000,000 milestone payment from Japan Tobacco, Inc. ("JT") in August 1995, and the net proceeds of approximately $78,589,000 from a public offering of common stock in September 1995, the Company had cash, cash equivalents and short-term investments of approximately $104,656,000. Management believes that its present capital resources, plus the funding from certain existing collaborative relationships, will be sufficient to meet its working capital needs at least through 1996. The Company will require additional long-term financing to meet the operating needs of 1997 and beyond. The Company will consider various financing vehicles to meet such needs including collaborative arrangements and public offerings or private placements of Company common or preferred stock. If such vehicles are not available, the Company may be required to delay or eliminate expenditures for certain of its products or to license third parties to commercialize products or technologies that the Company would otherwise seek to develop itself. Results of Operations The Company is engaged in the research and development of human pharmaceuticals utilizing protein structure-based drug design. Such research and development has been funded from the Company's equity-derived working capital and through various collaborative arrangements. The Company's net operating losses reflect primarily the result of its independent research and continued increasing investment in clinical development activities concentrated on the Company's lead compounds in cancer and AIDS. As product sales may not begin prior to calendar 1997 and certain programs are expanding their preclinical and clinical development activities, it is anticipated that net operating losses will continue and possibly increase through fiscal 1997. The increase in the net losses for the three and nine months ended March 31, 1996 compared to the year-earlier periods is due principally to the Company's commitment to support expanding clinical activities and establish a commercial infrastructure associated with the Company's two leading product candidates. These spending increases were only partially offset by increased revenues. Contract revenues in the current nine-month period have increased compared to the year earlier period due mainly to an anti-HIV collaboration with JT initiated in December 1994. Interest income has increased significantly from the prior-year three- and nine-month periods due to a higher average investment portfolio balance resulting from the previously described public offering and milestone payment. Research and development costs and expenses increased from the prior-year three- and nine-month periods due generally to increasing average research and development staff levels (approximately 22% and 20%, respectively) and staff-related expenditures, including occupancy, and significantly increased expenditures for human clinical trial activities associated with the Company's leading product development programs, THYMITAQ (TM) and VIRACEPT (TM). The increase in general and administrative costs and expenses in the current three- and six-month periods is due chiefly to increasing average staff levels (approximately 36% and 25%, respectively) and staff related expenditures and certain costs associated with a growing sales and marketing infrastructure. Interest expense in the current-year periods is generally decreasing as the level of debt and capital lease obligations declines. These declines are partially or wholly offsetting the exercise costs associated with certain lease buy-out options. PART II. OTHER INFORMATION Item 1. Legal Proceedings: The Company is involved in certain legal or administrative proceedings generally incidental to its normal business activities. While the outcome of any such proceedings cannot be accurately predicted, the Company does not believe the ultimate resolution of any such existing matters should have a material adverse effect on its financial position. Item 2. Changes in Securities: None. Item 3. Defaults Upon Senior Securities: None. Item 4. Submission of Matters to a Vote of Security Holders: None. Item 5. Other Information: None. Item 6. Exhibits and Reports on Form 8-K: a. Exhibits: 10.59 First Amendment to Agreement Three effective February 29, 1996 between Japan Tobacco, Inc. and the Company. 10.60 Amendment effective January 1, 1996 to the Agouron Pharmaceuticals, Inc. 401(k) Plan. 27 Financial Data Schedule. (Exhibit 27 is submitted as an exhibit only in the electronic format of this Quarterly Report on Form 10-Q submitted to the Securities and Exchange Commission.) b. Reports on Form 8-K: None. SIGNATURE Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned thereunto duly authorized. AGOURON PHARMACEUTICALS, INC. Date: April 26, 1996 /s/ Steven S. Cowell ------------------------------------------ Steven S. Cowell Vice President, Finance and Chief Financial Officer and Chief Accounting Officer