FORM 10-Q 	SECURITIES AND EXCHANGE COMMISSION 	WASHINGTON, D.C. 20549 (Mark one) [X]	QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) 	OF THE SECURITIES EXCHANGE ACT OF 1934 For Quarter Ended June 30, 2004 	OR [ ]	TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE 	SECURITIES EXCHANGE ACT OF 1934 Commission File Number 0-17554 	 PATRIOT TRANSPORTATION HOLDING, INC. 	(Exact name of registrant as specified in its charter) Florida 59-2924957 (State or other jurisdiction of (I.R.S. Employer) incorporation or organization) Identification No.) 	1801 Art Museum Drive, Jacksonville, Florida 32207 	(Address of principal executive offices) 	(Zip Code) 	904/396-5733 	(Registrant's telephone number, including area code) Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days. Yes X No Indicate by check mark whether the registrant is an accelerated filer (as defined in Rule 12b-2 of the Exchange Act). Yes ________ No _X______. Indicate the number of shares outstanding of each of the issuer's classes of common stock, as of July 27, 2004: 2,929,107 shares of $.10 par value common stock. PATRIOT TRANSPORTATION HOLDING, INC. FORM 10-Q QUARTER ENDED June 30, 2004 CONTENTS Page No. Part I. Financial Information Item 1. Financial Statements Condensed Consolidated Balance Sheets 1 Condensed Consolidated Statements of Income 2 Condensed Consolidated Statements of Cash Flows 3 Notes to Condensed Consolidated Financial Statements 4 Item 2. Management's Discussion and Analysis 8 Item 3. Quantitative and Qualitative Disclosures about Market Risks 14 Item 4. Controls and Procedures 14 Part II. Other Information Item 1. Legal Proceedings 15 Item 2. Changes in Securities and Use of Proceeds 15 Item 6. Exhibits and Reports on Form 8-K 15 Signatures 16 Exhibit 11 Computation of Earnings Per Share 21 Exhibit 31 Certifications pursuant to Section 302 of the Sarbanes-Oxley Act of 2002 22 Exhibit 32 Certifications pursuant to Section 906 of the Sarbanes-Oxley Act of 2002 25 PART I. FINANCIAL INFORMATION ITEM 1. FINANCIAL STATEMENTS PATRIOT TRANSPORTATION HOLDING, INC. AND SUBSIDIARIES CONDENSED CONSOLIDATED BALANCE SHEETS (In thousands) (Unaudited) June 30, September 30, 2004 2003 ASSETS Current assets: Cash and cash equivalents $ 120 757 Cash held in escrow 17,959 1,795 Accounts receivable (including related party of $557 and $359) 8,713 7,898 Less allowance for doubtful accounts (624) (566) Inventory 606 670 Prepaid expenses and other 2,753 3,411 Total current assets 29,527 13,965 Property, plant and equipment, at cost 219,957 205,211 Less accumulated depreciation and depletion (73,035) (65,832) Net property, plant and equipment 146,922 139,379 Assets held for sale - 5,883 Other assets 6,386 5,989 Total assets $182,835 165,216 LIABILITIES AND SHAREHOLDERS' EQUITY Current liabilities: Accounts payable $ 3,459 4,728 Federal and state income taxes 6,112 6 Accrued liabilities 5,249 4,941 Liabilities associated with assets held for sale - 60 Long-term debt due within one year 4,445 1,485 Total current liabilities 19,265 11,220 Long-term debt 44,461 57,816 Deferred income taxes 15,234 10,760 Accrued insurance reserves 5,722 5,722 Other liabilities 1,606 1,669 Commitments and contingencies (Note 9) Shareholders' equity: Preferred stock, no par value; 5,000,000 shares authorized - - Common stock, $.10 par value; 25,000,000 shares authorized, 2,929,107 and 2,932,708 shares issued and outstanding, respectively 293 293 Capital in excess of par value 5,338 6,065 Retained earnings 90,916 71,671 Total shareholders' equity 96,547 78,029 Total liabilities and shareholders' equity $182,835 165,216 See accompanying notes. PATRIOT TRANSPORTATION HOLDING, INC. AND SUBSIDIARIES CONDENSED CONSOLIDATED STATEMENTS OF INCOME (In thousands except per share amounts) (Unaudited) THREE MONTHS NINE MONTHS ENDED JUNE 30, ENDED JUNE 30, 2004 2003 2004 2003 Revenues: Related parties $ 1,680 1,830 4,503 4,650 Non-related parties 27,990 24,997 81,237 70,837 29,670 26,827 85,740 75,487 Cost of operations 23,681 21,850 69,519 62,593 Gross profit 5,989 4,977 16,221 12,894 Selling, general and administrative expense 2,276 2,018 6,650 6,006 Recovery of non-recurring charges related to closed subsidiary - (5) - (29) Operating profit 3,713 2,964 9,571 6,917 Other income 284 - 378 - Interest expense, net (915) (899) (2,869) (2,623) Income before income taxes 3,082 2,065 7,080 4,294 Provision for income taxes (1,169) (805) (2,690) (1,674) Income from continuing operations 1,913 1,260 4,390 2,620 Discontinued operations (Note 6): Income from operations, net of tax 32 86 191 286 Gain on sale of properties, net of tax 9,009 - 14,664 - Net income $10,954 1,346 19,245 2,906 Earnings per common share: Income from continuing operations - basic $ .65 .42 1.50 .85 - diluted $ .64 .41 1.47 .85 Discontinued operations - basic $ 3.09 .03 5.07 .10 - diluted $ 3.04 .03 4.99 .09 Net income-basic $ 3.74 .45 6.57 .95 Net income-diluted $ 3.68 .44 6.46 .94 Average shares outstanding - basic 2,929 3,015 2,931 3,067 - diluted 2,979 3,054 2,977 3,098 See accompanying notes. PATRIOT TRANSPORTATION HOLDING, INC. AND SUBSIDIARIES CONDENSED CONSOLIDATED STATEMENTS OF CASH FLOWS NINE MONTHS ENDED JUNE 30, 2004 AND 2003 (In thousands) (Unaudited) 2004 2003 Cash flows from operating activities: Net income $19,245 2,906 Adjustments to reconcile net income to net cash provided by operating activities: Depreciation, depletion and amortization 9,173 8,963 Deferred income taxes 4,342 (289) Gain on disposition of property, plant and equipment (23,789) (100) Net changes in operating assets and liabilities: Accounts receivable (765) 23 Prepaid expenses and other current assets 730 468 Accounts payable and accrued liabilities 5,278 (1,910) Net change in insurance reserve and other liabilities (64) 74 Other, net 51 47 Net cash provided by operating activities 14,201 10,182 Cash flows from investing activities: Purchase of property, plant and equipment (16,870) (17,657) Additions to other assets (818) (502) Cash held in escrow (16,164) - Proceeds from sale of property, plant and equipment, and other assets 30,196 1,117 Net cash used in investing activities (3,656) (17,042) Cash flows from financing activities: Proceeds from issuance of long-term debt 8,500 4,600 Net (decrease) increase in revolving debt (17,512) 10,000 Repayment of long-term debt (1,443) (991) Repurchase of Company stock (2,509) (6,118) Exercise of employee stock options 1,782 412 Net cash (used in) provided by financing activities (11,182) 7,903 Net (decrease) increase in cash and cash equivalents (637) 1,043 Cash and cash equivalents at beginning of year 757 529 Cash and cash equivalents at end of the period $ 120 1,572 See accompanying notes. PATRIOT TRANSPORTATION HOLDING, INC. AND SUBSIDIARIES NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS JUNE 30, 2004 (Unaudited) (1) Basis of Presentation. The accompanying condensed consolidated financial statements include the accounts of Patriot Transportation Holding, Inc. and its subsidiaries (the "Company"). These statements have been prepared in accordance with accounting principles generally accepted in the United States of America for interim financial information and the instructions to Form 10-Q and do not include all the information and footnotes required by accounting principles generally accepted in the United States of America for complete financial statements. In the opinion of management, all adjustments (primarily consisting of normal recurring accruals) considered necessary for a fair presentation of the results for the interim periods have been included. Operating results for the three months and nine months ended June 30, 2004 are not necessarily indicative of the results that may be expected for the fiscal year ending September 30, 2004. The accompanying condensed consolidated financial statements and the information included under the heading "Management's Discussion and Analysis of Financial Condition and Results of Operations" should be read in conjunction with the Company's consolidated financial statements and related notes included in the Company's Form 10-K for the year ended September 30, 2003. Certain reclassifications have been made to the Fiscal 2003 consolidated financial statements to conform to the presentation adopted in Fiscal 2004. (2) Recent Accounting Pronouncements. In December 2003, the FASB revised Statement No. 132 "Employers' Disclosures about Pensions and Other Postretirement Benefits." This Statement retains the disclosure requirements of the original Statement, which it replaces, and requires additional disclosures about the assets, obligations, cash flows and net periodic benefit cost of defined benefit pension plans and other defined benefit postretirement plans. The annual financial statement disclosures are effective for the Company for the fiscal year ended September 30, 2004. For the three and nine months ended June 30, 2004 and 2003, no postretirement benefit income or expense was recorded. The Company does not expect to be required to make cash contributions for fiscal 2004. (3) Business Segments. The Company has identified two business segments each of which is managed separately along product lines. The Company's operations are substantially in the Southeastern and Mid-Atlantic states. The transportation segment hauls liquid and dry commodities by motor carrier. The real estate segment owns real estate of which a substantial portion is under mining royalty agreements or leased. The real estate segment also holds certain other real estate for investment and is developing commercial and industrial properties. Operating results and certain other financial data for the Company's business segments are as follows (in thousands): Three Months ended Nine Months ended June 30, June 30, 2004 2003 2004 2003 Revenues: Transportation $25,585 23,079 73,637 65,057 Real estate 4,085 3,748 12,103 10,430 $29,670 26,827 85,740 75,487 Operating profit Transportation $ 1,641 967 4,108 2,035 Real estate 2,435 2,346 6,609 5,993 Corporate expenses (363) (349) (1,146) (1,111) $ 3,713 2,964 9,571 6,917 Identifiable assets: June 30, Sept. 30, 2004 2003 Transportation $ 41,076 45,055 Real estate 140,472 116,269 Cash items 120 2,552 Unallocated corporate assets 1,167 1,340 $182,835 165,216 (4) Long-Term debt. Long-term debt is summarized as follows (in thousands): June 30, September 30, 2004 ____2003 ____ Revolving Credit, Uncollateralized, payable in 2005 $ 2,488 20,000 5.7% to 9.5% mortgage notes payable in installments through 2020 46,418 39,361 48,906 59,361 Less portion due in one year 4,445 1,545 $44,461 57,816 (5) Related Party Transactions. The Company, through its transportation subsidiaries, hauls commodities by tank and flatbed trucks for Florida Rock Industries, Inc. (FRI). Charges for these services are based on prevailing market prices. Other wholly owned subsidiaries lease certain construction aggregates mining and other properties to FRI. In addition, the Company outsources certain administrative functions to FRI, including some human resource, legal and other services. During 2004, the Company closed on previously announced agreements to sell three tracts of land to FRI as follows: Lake City, Florida. On March 30, 2004, a subsidiary sold a parcel of land and improvements containing approximately 6,321 acres in Suwannee and Columbia Counties, near Lake City, Florida to a subsidiary of FRI for $13,000,000 in cash, resulting in a gain of $5,655,000 after income taxes of $3,465,000. The sales price was approved by the Company's Audit Committee after considering among other factors, an independent appraisal, the current use of the property and consultation with management. Springfield, Virginia. On May 7, 2004 a subsidiary of the Company sold 108 acres of land located in the northwest quadrant of I-395 and I-495 at Edsall Road in Springfield, Virginia to FRI for $15,000,000 in cash resulting in a gain of $8,009,000, after income taxes of $4,909,000. The sales price was approved by a committee of independent directors of the Company after review of a development feasibility study and other materials, consultation with management and advice of independent counsel. Miami, Florida. Also on May 7, 2004, a subsidiary of the Company sold a 935 acre parcel of property in Miami, Florida to FRI for $1,628,000 in cash, resulting in a gain of $1,000,000, after income taxes of $614,000. The property is principally composed of mined-out lakes, mitigation areas, 145 acres of mineable land and 32 acres of roads and railroad track right-of-ways. The terms of the sale were approved by the Company's Audit Committee after considering, among other factors, the terms of the existing lease agreement and consultation with management. See Note (6) for further information regarding the accounting for the sales of these properties as discontinued operations. (6) Discontinued operations. As discussed in Note (5), during the nine months ended June 30, 2004, the Company sold three tracts of land that were accounted for as discontinued operations in accordance with Statement of Financial Accounting Standards No. 144, "Accounting for the Impairment or Disposal of Long-Lived Assets" (SFAS 144). The gains from the sales of these properties of $14,664,000, net of income taxes of $8,988,000, have been recorded as discontinued operations. The results of operations of these properties, consisting of royalty and rental income, operating expenses and depreciation, have been reclassified to discontinued operations. Income from the disposed properties, net of income taxes, was $32,000 and $191,000 for the quarter and nine months ended June 30, 2004 and $86,000 and $286,000 for the three and nine months ended June 30, 2003, respectively. All periods presented have been restated accordingly. (7) Cash held in escrow. The proceeds of the property sales discussed in Note 5 were placed in escrow in anticipation of reinvesting these proceeds in tax deferred exchanges under Section 1031 of the United States Internal Revenue Code. In April 2004, $11,350,000 of the escrowed funds from the Lake City property sale were used to purchase two existing commercial warehouse/distribution buildings totaling 303,000 square feet and an adjacent 8.75 acre lot located in Newark, Delaware. The Company has three escrow accounts, consisting of $1,468,000 remaining from the Lake City property sale, $1,614,000 from the Miami, Florida property sale, and $14,877,000 from the Springfield, Virginia property sale. The escrowed funds must remain in the escrow accounts in order to preserve the Section 1031 opportunities until the earlier of (i) the date the identified property is purchased, (ii) the date all the identified properties in each account becomes unavailable, or (iii) the expiration of the 180 day qualifying period. The qualifying period ends on September 26, 2004, for $1,468,000 of the escrowed funds and November 2, 2004, for $16,491,000 of the escrowed funds. (8) Repurchase of Company Stock. During the quarter and nine months ended June 30, 2004, the Company repurchased and retired 11,001 and 77,501 shares of its common stock for $376,000 and $2,509,000, respectively, under a plan approved by the Board of Directors. (9) Stock-Based Compensation Plan. The Company accounts for its stock- based employee compensation plans under the recognition and measurement principles of APB Opinion No. 25, "Accounting for Stock Issued to Employees", and related interpretations. No stock-based employee compensation cost is reflected in net income, as all options granted under those plans had an exercise price equal to the market value of the underlying common stock on the date of grant. The following table illustrates the effect on net income and earnings per share if the company had applied the fair value recognition provisions of FASB Statement No. 123, "Accounting for Stock-Based Compensation", to stock- based employee compensation. Three Months ended Nine Months ended (Amounts in thousands) June 30, June 30, 2004 2003 2004 2003 Net income, as reported $10,954 1,346 19,245 2,906 Deduct: Total stock-based employee compensation expense determined under fair value based method for all awards, net of income taxes 121 125 338 417 Pro forma net income $10,833 1,221 18,907 2,489 Earnings per share: Basic as reported $ 3.74 .45 6.57 .95 Basic pro forma $ 3.70 .40 6.45 .81 Diluted as reported $ 3.68 .44 6.46 .94 Diluted pro forma $ 3.64 .40 6.35 .80 (10) Contingencies and Commitments. Certain of the Company's subsidiaries are involved in litigation on a number of matters and are subject to certain claims that arise in the normal course of business. The Company has retained certain self-insurance risks with respect to losses for third party liability and property damage. In the opinion of management, based in part on advice of legal counsel, none of these matters are expected to have a materially adverse effect on the Company's consolidated financial condition, results of operations or cash flows. In December 2003, the Company committed to develop a 145,000 square foot build to suit warehouse/office building pursuant to a 15 year triple net lease. This project is expected to cost approximately $14,900,000. The Company is also committed to purchase approximately $4,000,000 in transportation equipment. ITEM 2. MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS OPERATING RESULTS. The Company's operations are influenced by a number of external and internal factors. External factors include levels of economic and industrial activity in the United States and the Southeast, petroleum product usage in the Southeast which is driven in part by tourism and commercial aviation, fuel costs, driver availability and cost, regulations regarding driver qualifications and hours of service, construction activity, FRI sales from the Company's mining properties, interest rates and demand for commercial warehouse/office space in the Baltimore/Washington area. Internal factors include revenue mix, capacity utilization, auto and workers' compensation accident frequencies and severity, other operating factors, administrative costs, and construction costs of new projects. During Fiscal 2003, the transportation segment's ten largest customers accounted for approximately 38% of the transportation segment's revenue. The loss of any one of these customers could have an adverse effect on the Company's revenues and income. Financial results of the Company for any individual quarter are not necessarily indicative of the results to be expected for the year. Three Months Operating Results For the third quarter of Fiscal 2004, consolidated revenues were $29,670,000, an increase of $2,843,000 or 10.6% over the same quarter last year. The transportation segment's revenues for the third quarter of Fiscal 2004 were $25,585,000, an increase of $2,506,000 or 10.9% over the same quarter last year. This increase was a result of a 5.0% increase in miles hauled and improved revenue per mile over the same quarter last year. The increase in miles hauled resulted primarily from a 12.1% increase in miles hauled in the flatbed division, reflecting higher demand, primarily for construction materials. Revenues per mile, net of fuel surcharges, increased 3.2% in the tankline division and 8.5% in the flatbed division, reflecting improved business conditions, and better equipment utilization. Fuel surcharges accounted for $498,000 or 19.9% of the overall increase in revenue. Real estate revenues were $4,085,000 for the third quarter of Fiscal 2004, an increase of $337,000 or 9.0% from the third quarter of Fiscal 2003. Royalties from mining contracts decreased $77,000 or 4.8% primarily due to a 4.5% decrease in tons of stone materials sold, as compared to the same quarter last year. Revenues from flex office- warehouse properties increased $416,000 or 19.3%, primarily due to a 28.0% increase in average leased square feet. The increase in leased square feet is attributable to the completion of a 200,200 square foot build-to-suit flex office/warehouse in August 2003 and the April 2004 purchase of two existing commercial warehouse/distribution buildings, comprising 303,000 square feet. Of this new space, 352,200 average square feet were leased during the quarter ended June 30, 2004. Consolidated gross profit for the third quarter of 2004 was $5,989,000, an increase of $1,012,000 or 20.3% from the third quarter of last year. Gross profit in the transportation segment increased $922,000 or 35.0% achieved by the increased revenue and a steady level of fixed costs. Gross profit in the real estate segment increased $90,000 or 3.8% from the third quarter of 2003 primarily due to the gross profit derived from the additional leased space. Selling, general and administrative expense increased $258,000 or 12.8% for the third quarter of 2004 compared to the same period last year. The increase is primarily due to the accrual of management incentive compensation, which is based on the Company achieving certain profitability targets. Selling, general and administrative expense as a percent of consolidated revenues, was 7.7% in the third quarter of 2004 as compared to 7.5% the same quarter last year. Income from continuing operations was $1,913,000 or $.64 per diluted share for the third quarter of Fiscal 2004, an increase of $653,000 from the same quarter last year. Income from discontinued operations of $9,041,000 net of income taxes was recorded during the quarter, primarily as a result of the net gain on sale of properties to a related party for $16,628,000. Net income was $10,954,000 or $3.68 per diluted share for the third quarter of Fiscal 2004 compared to $1,346,000 or $.44 per diluted share for the same quarter last year. Nine Month's Operating Results. For the first nine months of Fiscal 2004, consolidated revenues were $85,740,000, an increase of $10,253,000 or 13.6% over the same period last year. The transportation segment's revenues for the first nine months of Fiscal 2004 were $73,637,000, an increase of $8,580,000 or 13.2% over the same period last year. The revenue increase is primarily due to a 5.6% increase in miles hauled in the tankline division and a 21.6% increase in miles for the flatbed division. These increases reflect higher customer demand over the same period last year. Revenue per mile, net of fuel surcharges, increased 2.5%, reflecting moderate price increases, particularly in the flatbed division. Fuel surcharges accounted for $761,000 or 8.9% of the increased revenue. Real estate revenues were $12,103,000 for the first nine months of 2004, an increase of $1,673,000 or 16.0% from the first nine months of 2003. Royalties from mining contracts increased $393,000 or 9.9% primarily resulting from an increase in mined materials sold. Revenues from flex office-warehouse properties increased $1,349,000 or 21.1%, primarily due to a 20.2% increase in average leased square feet. The increase in leased square feet is attributable to the completion of a 200,200 square foot build-to-suit flex office/warehouse in August 2003 and the April 2004 purchase of two existing commercial warehouse/distribution buildings, comprising 303,000 square feet. Of this new space, 251,000 average square feet were leased during the nine months ended June 30, 2004. Consolidated gross profit increased $3,327,000 or 25.8% for the first nine months as compared to the same period last year. Gross profit in the transportation segment increased $2,710,000 or 39.3% as a result of the increased revenue and steady level of fixed costs. Gross profit in the real estate segment increased $617,000 or 10.3% from the first nine months of 2004 due to increased royalties from mining operations, as well as gross profits from the additional leased space. Selling, general and administrative expense increased $644,000 or 10.7% for the first nine months of 2004 compared to the same period last year. The increase is primarily due to the accrual of management incentive compensation, which is based on the Company achieving certain profitability targets. Selling, general and administrative expense as a percent of consolidated revenues was 7.8% compared to 8.0% last year. The Company recorded an income tax provision of $2,690,000 in the first nine months of 2004 compared to $1,674,000 in the same period last year. The effective tax rate decreased to 38% in 2004 from 39% in 2003. Income from continuing operations was $4,390,000 or $1.47 per diluted share for the first nine months of Fiscal 2004 compared to $2,620,000 or $.85 per diluted share for the same period last year. Income from discontinued operations for the nine months ended June 30, 2004 was $14,855,000 net of income taxes, primarily as a result of the net gain from sale of two rental properties and a mining property to a related party for $26,628,000. Net income was $19,245,000 or $6.46 per diluted share for the first nine months of Fiscal 2004 compared to $2,906,000 or $.94 per diluted share for the same period last year. Summary and Outlook The Company's real estate and transportation businesses are both experiencing an improved economic climate as the result of a strengthening regional and national economy. While low interest rates continue to enhance overall business conditions, the Company's real estate development operations are encountering stronger levels of inquiry from prospective tenants for the Company's flexible office/warehouse product. Demand for hauling services has also strengthened for the Company's transportation business. Improved demand and pricing is especially occurring for the Company's flatbed trucking operations, which haul primarily construction materials. Operating pressures from volatile diesel fuel costs, tight driver availability, and burdensome health and liability insurance costs will continue to challenge the trucking industry. Such expense pressure in the face of improving freight demand should lead to continued price increases for hauling services. Liquidity and Capital Resources For the first nine months of Fiscal 2004, operating cash flow of $14,201,000 and $8,500,000 from a secured borrowing allowed the Company to repay $18,955,000 in long term debt and to repurchase Company stock for $2,509,000. At June 30, 2004, $34,512,000 was available under the $37 million Revolver. The Board of Directors has authorized Management to repurchase shares of the Company's common stock from time to time as opportunities arise. During the first nine months of Fiscal 2004, the Company repurchased 77,501 shares for $2,509,000. The Company has approximately $3,492,000 authorized for the repurchase of the Company's common stock as of June 30, 2004. In December 2003, the Company committed to develop a 145,000 square foot build-to-suit warehouse/office building pursuant to a 15 year triple net lease. This project is expected to cost approximately $14,900,000. The Company intends to finance the project through a construction loan and the Company's existing Revolver. The terms of the construction financing are for borrowings not to exceed $11,800,000 for a period not to exceed 18 months converting to a 15 year non-recourse mortgage at project completion. Interest rate is 6.12% for both the construction and mortgage loans. As of June 30, 2004, the Company is committed to purchase approximately $4,000,000 in transportation equipment, for replacement and fleet expansion purposes. These purchases are expected to occur over the next six months. During the second quarter of 2004, approximately $1,795,000 in funds held in escrow at September 30, 2003 received from the sale of a mining property in September 2003 became unrestricted, as a suitable 1031 exchange property was not found. The cash was used to repay amounts due under the Revolver and the related tax liability was transferred to current taxes payable. At June 30, 2004, the Company had $17,959,000 of cash held in escrow resulting from the sales of property to FRI. The Company has three escrow accounts, consisting of $1,468,000 remaining from the Lake City, Florida property sale, $1,614,000 from the Miami, Florida property sale, and $14,877,000 from the Springfield, Virginia property sale. It was the intention of the Company to reinvest these proceeds in tax deferred exchanges under Section 1031 of the Internal Revenue Code. Several exchange properties were identified for each sale and the Company is currently evaluating each of the remaining available properties. The period allowed under Section 1031 for reinvestment ends on September 26, 2004, for $1,468,000 of the escrowed funds and November 2, 2004, for $16,491,000 of the escrowed funds. Subsequent to June 30, 2004, three of the four properties identified for the Springfield, Virginia proceeds became unavailable. As a result, approximately $7,700,000 of the gain recognized from that sale will not be tax deferred and the related tax liability of $2,926,000 has been reclassified as current taxes payable in the accompanying balance sheet as of June 30, 2004. However, the Company intends to keep the associated funds in the escrow account until the earlier of (i) the date the remaining identified property is purchased, (ii) the date the remaining identified property becomes unavailable, or (iii) the expiration of the 180 day qualifying period on November 2, 2004. Reinvestment of the proceeds from these transactions is expected to facilitate the Company's long term plan to build and own a portfolio of successful rental properties. For additional information see Note 5 of Notes to Condensed Consolidated Financial Statements. While the Company is affected by environmental regulations, such regulations are not expected to have a major effect on the Company's capital expenditures or operating results. Based on current expectations, management believes that its internally generated cash flow and access to credit facilities are sufficient on a current and long term basis to meet the liquidity requirements necessary to fund operations, capital requirements and debt service. The $37 million Revolver matures in January 2005 and the Company expects to renew the credit facility under substantially the same terms and conditions. Forward-Looking Statements. Certain matters discussed in this report contain forward-looking statements that are subject to risks and uncertainties that could cause actual results to differ materially from these indicated by such forward-looking statements. These forward- looking statements relate to, among other things, capital expenditures, liquidity, capital resources and competition and may be indicated by words or phrases such as "anticipate", "estimate", "plans", "projects", "continuing", "ongoing", "expects", "management believes", "the Company believes", "the Company intends" and similar words or phrases. The following factors and others discussed in the Company's periodic reports and filings with the Securities and Exchange Commission are among the principal factors that could cause actual results to differ materially from the forward-looking statements: driver availability and cost; regulations regarding driver qualifications and hours of service; availability and terms of financing; freight demand for petroleum products including recessionary and terrorist impacts on travel in the Company's markets; freight demand for building and construction materials in the Company's markets; risk insurance markets; competition; general economic conditions; demand for flexible warehouse/office facilities in the Baltimore/Washington D.C. area; interest rates; levels of construction activity in FRI's markets; fuel costs; and inflation. However, this list is not a complete statement of all potential risks or uncertainties. These forward-looking statements are made as of the date hereof based on management's current expectations, and the Company does not undertake an obligation to update such statements, whether as a result of new information, future events or otherwise. Additional information regarding these and other risk factors may be found in the Company's other filings made from time to time with the Securities and Exchange Commission. ITEM 3. QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISKS There are no material changes to the disclosures made in Form 10-K for the fiscal year ended September 30, 2003 with respect to this item. ITEM 4. CONTROLS AND PROCEDURES Evaluation of disclosure controls and procedures. As required by Rule 13A-15 under the Exchange Act, as of the end of the period covered by this report, the Company carried out an evaluation of the effectiveness of the design and operation of the Company's disclosure controls and procedures. This evaluation was carried out under the supervision and with the participation of the Company's management, including the Company's President and Chief Executive Officer, Chief Financial Officer and Chief Accounting Officer. The evaluation conducted by the Company's President and Chief Executive Officer, Chief Financial Officer and Chief Accounting Officer has provided them with reasonable assurance that the Company's disclosure controls and procedures are effective in timely alerting them to material information relating to the Company required to be included in the Company's periodic SEC filings. Disclosure controls and procedures are controls and other procedures that are designed to ensure that information required to be disclosed in Company reports filed or submitted under the Exchange Act is recorded, processed, summarized and reported, within the time periods specified in the Securities and Exchange Commission's rule and forms. Disclosure controls and procedures include, without limitation, controls and procedures designed to ensure that information required to be disclosed in Company reports filed under the Exchange Act is accumulated and communicated to management, including the Company's Chief Executive Officer, Chief Financial Officer and Chief Accounting Officer as appropriate, to allow timely decisions regarding required disclosures. Changes in internal controls. There have been no changes in internal controls or in other factors that could significantly affect these controls during the quarter, including any corrective actions with regard to significant deficiencies and material weaknesses. PART II OTHER INFORMATION Item 1. Legal Proceedings See Note 9 to the Condensed Consolidated Financial Statements included in this Form 10-Q. Item 2. Changes in Securities and use of Proceeds Purchases of Equity Securities by the Issuer and Affiliated Purchasers (c) Total Number of Shares (d) Purchased Approximate (a) As Part of Dollar Value of Total (b) Publicly Shares that May Number of Average Announced Yet Be Purchased Shares Price Paid Plans or Under the Plans Period Purchased per Share Programs or Programs (1) April 1 through April 30 3,600 $ 31.606 3,600 $ 3,754,000 May 1 through May 31 300 $ 31.641 300 $ 3,745,000 June 1 through June 30 7,100 $ 35.700 7,100 $ 3,492,000 Total 11,000 $ 34.249 11,000 (1) In December, 2003, the Board of Directors authorized management to expend up to $6,000,000 to repurchase shares of the Company's common stock from time to time as opportunities arise. Item 6. Exhibits and Reports on Form 8-K (a) Exhibits. The response to this item is submitted as a separate Section entitled "Exhibit Index", starting on page 18. (b) Reports on Form 8-K. On April 27, 2004, the Company filed a Form 8-K reporting under Items 7, 9 and 12, a press release announcing its earnings for the second quarter of the Fiscal year ending September 30, 2004. On April 5, 2004, the Company filed a Form 8-K reporting under Item 5 that a subsidiary of the Company closed on the sale of a parcel of land and improvements containing approximately 6,321 acres in Suwannee and Columbia Counties, Florida. On May 7, 2004, the Company filed a Form 8-K reporting under Items 5 and 7 that a subsidiary of the Company closed on the sale of two parcels of property. SIGNATURES Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has duly caused this Report to be signed on its behalf by the undersigned thereunto duly authorized. July 29, 2004 PATRIOT TRANSPORTATION HOLDING, INC. John E. Anderson John E. Anderson President and Chief Executive Officer Ray M. Van Landingham_ Ray M. Van Landingham Vice President Finance & Administration and Chief Financial Officer Gregory B. Lechwar Gregory B. Lechwar Controller and Chief Accounting Officer PATRIOT TRANSPORTATION HOLDING, INC. FORM 10-Q FOR THE QUARTER ENDED JUNE 30, 2004 EXHIBIT INDEX (3)(a)(1)		Articles of Incorporation of Patriot Transportation Holding Inc., incorporated by reference to the corresponding exhibit filed with Form S-4 dated December 13,1988. File No. 33-26115. (3)(a)(2)		Amendment to the Articles of Incorporation of Patriot Transportation Holding, Inc. filed with the Secretary of State of Florida on February 19, 1991 incorporated by reference to the corresponding exhibit filed with Form 10-K for the fiscal year ended September 30, 1993. File No. 33-26115. (3)(a)(3)		Amendments to the Articles of Incorporation of Patriot Transportation Holding, Inc. filed with the Secretary of State of Florida on February 7,1995, incorporated by reference to an appendix to the Company's Proxy Statement dated December 15, 1994. File No. 33-26115. (3)(a)(4)		Amendment to the Articles of Incorporation of Patriot Transportation Holding, Inc., filed with the Florida Secretary of State on May 6, 1999 incorporated by reference to a form of such amendment filed as Exhibit 4 to the Company's Form 8-K dated May 5, 1999. File No. 33-26115. (3)(a)(5)		Amendment to the Articles of Incorporation of Patriot Transportation Holding, Inc. filed with the Secretary of State of Florida on February 21, 2000, incorporated by reference to the corresponding exhibit filed with Form 10-Q for the quarter ended March 31, 2000. File No. 33-26115. (3)(b)(1)		Restated Bylaws of Patriot Transportation Holding, Inc. adopted December 1, 1993, incorporated by reference to the corresponding exhibit filed with Form 10-K for the fiscal year ended September 30, 1993. File No. 33-26115. (3)(b)(2)		Amendment to the Bylaws of Patriot Transportation Holding, Inc. adopted August 3, 1994, incorporated by reference to the corresponding exhibit filed with Form 10-K for the fiscal year ended September 30, 1994. File No. 33-26115. (3)(b)(3)		Amendment to the Articles of Incorporation of Patriot Transportation Holding, Inc. filed with the Secretary of State of State of Florida on February 7, 1995, incorporated by reference to an appendix to the Company's Proxy Statement dated December 15, 1994. File No. 33-26115. (3)(b)(4)		Amendment to the Restated Bylaws of Patriot Transportation Holding, Inc. adopted May 5, 2004. (4)(a)		Articles III, VII and XII of the Articles of Incorporation of Patriot Transportation Holding, Inc., incorporated by reference to an exhibit filed with Form S-4 dated December 13, 1988. And amended Article III, incorporated by reference to an exhibit filed with Form 10-K for the fiscal year ended September 30, 1993. And Articles XIII and XIV, incorporated by reference to an appendix filed with the Company's Proxy Statement dated December 15, 1994. File No. 33-26115. (4)(b)		Specimen stock certificate of Patriot Transportation Holding, Inc., incorporated by reference to an exhibit filed with Form S-4 dated December 13, 1988. File No. 33-26115. (4)(c)		Revolving Credit Agreement dated as of January 9, 2002 among Patriot Transportation Holding, Inc. as Borrower, the Lenders from time to time party thereto and SunTrust Bank as Administrative Agent, incorporated by reference to an exhibit filed with Form 10-Q for the quarter ended December 31, 2001. File No. 33-26115. (4)(d)		The Company and its consolidated subsidiaries have other long-term debt agreements none of which exceed 10% of the total consolidated assets of the Company and its subsidiaries, and the Company agrees to furnish copies of such agreements and constituent documents to the Commission upon request. (4)(e)		Rights Agreement, dated as May 5, 1999 between the Company and First Union National Bank, incorporated by reference to Exhibit 4 to the Company's Form 8-K dated May 5, 1999. File No. 33-26115. (10)(a)		Various lease backs and mining royalty agreements with Florida Rock Industries, Inc., none of which are presently believed to be material individually, except for the Mining Lease Agreement dated September 1, 1986, between Florida Rock Industries Inc. and Florida Rock Properties, Inc., successor by merger to Grandin Land, Inc. (see Exhibit (10)(c)), but all of which may be material in the aggregate, incorporated by reference to an exhibit filed with Form S-4 dated December 13, 1988. File No. 33-26115. (10)(b)		License Agreement, dated June 30, 1986, from Florida Rock Industries, Inc. to Florida Rock & Tank Lines, Inc. to use "Florida Rock" in corporate names, incorporated by reference to an exhibit filed with Form S-4 dated December 13, 1988. File No. 33-26115. (10)(c)		Mining Lease Agreement, dated September 1, 1986, between Florida Rock Industries, Inc. and Florida Rock Properties, Inc., successor by merger to Grandin Land, Inc., incorporated by reference to an exhibit previously filed with Form S-4 dated December 13, 1988. File No. 33-26115. (10)(d)		Summary of Medical Reimbursement Plan of Patriot Transportation Holding, Inc., incorporated by reference to an exhibit filed with Form 10-K for the fiscal year ended September 30, 1993. File No. 33-26115. (10)(e)		Summary of Management Incentive Compensation Plans, incorporated by reference to an exhibit filed with Form 10-K for the fiscal year ended September 30, 1994. File No. 33-26115. (10)(f)		Management Security Agreements between the Company and certain officers, incorporated by reference to a form of agreement previously filed (as Exhibit (10)(I)) with Form S-4 dated December 13, 1988. File No. 33-26115. (10)(g)(1)		Patriot Transportation Holding, Inc. 1995 Stock Option Plan, incorporated by reference to an appendix to the Company's Proxy Statement dated December 15, 1994. File No. 33-26115. (10)(g)(2)		Patriot Transportation Holding, Inc. 2000 Stock Option Plan, incorporated by reference to an appendix to the Company's Proxy Statement dated December 15, 1999. File No. 33-26115. (10)(h) 	Purchase and Sale Agreement dated February 6, 2002 between Florida Rock Industries, Inc. and Florida Rock Properties, Inc., incorporated by reference to an exhibit filed with Form 10-Q for the quarter ended December 31, 2001. (10)(i) 	Purchase and Sale Agreement dated August 25, 2003 between Florida Rock Properties, Inc. and Florida Rock Industries, Inc., incorporated by reference to an exhibit filed with Form 10-K for the year ended September 30, 2003. (10)(j) 	Agreement of Purchase and Sale dated October 21, 2003 between FRP Bird River, LLC and The Ryland Group, Inc., incorporated by reference to an exhibit filed with form 10-K for the year ended September 30, 2003. (10)(k) 	Purchase and Sale Agreement dated March 30, 2004 between Florida Rock Properties, Inc. and Mule Pen Quarry Corporation, incorporated by reference to an exhibit filed with Form 10-Q for the quarter ended March 31, 2004. (11)	 Computation of Earnings Per Common Share. (14) 	Financial Code of Ethical Conduct between the Company, Chief Executive Officers and Financial Managers, adopted December 4, 2002, incorporated by reference to an exhibit filed with Form 10-K for the year ended September 30, 2003. (31)(a) 	Certification of John E. Anderson. (31)(b) 	Certification of Ray M. Van Landingham. (31)(c) 	Certification of Gregory B. Lechwar. (32) 	Certification of Chief Executive Officer, Chief Financial Officer, and Chief Accounting Officer pursuant to 18 U.S.C. Section 1350, Adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.