Exhibit 32




CERTIFICATION UNDER SECTION 906 OF THE SARBANES-OXLEY ACT OF 2002


Pursuant to Section 906 of the Sarbanes-Oxley Act of 2002, each of the
undersigned certifies that this periodic report fully complies with the
requirements of Section 13(a) or 15(d) of the Securities Exchange Act of 1934
and that information contained in this periodic report fairly presents, in all
material respects, the financial condition and results of operations of
Patriot Transportation Holding, Inc.

                                        PATRIOT TRANSPORTATION HOLDING, INC.


December 3, 2008                        JOHN D. BAKER II_______________

                                        John D. Baker II
                                        President and Chief Executive Officer


                                        JOHN D. MILTON, JR.__________

                                        John D. Milton, Jr.
                                        Executive Vice President, Treasurer,
                                        Secretary and Chief Financial Officer


                                        JOHN D. KLOPFENSTEIN___________

                                        John D. Klopfenstein
                                        Controller and Chief
                                        Accounting Officer


A signed original of this written statement required by Section 906 has been
provided to Patriot Transportation Holding, Inc. and will be retained by
Patriot Transportation Holding, Inc. and furnished to the Securities and
Exchange Commission or its staff upon request.

The foregoing certification accompanies the issuer's Annual Report on Form 10-K
and is not filed as provided in SEC Release Nos. 33-8212, 34-4751 and IC-25967,
dated June 30, 2003.