UNITED STATES
                       SECURITIES AND EXCHANGE COMMISSION
                             WASHINGTON, D.C.  20549

                                    FORM 10-Q


    [X]     QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(D) OF THE SECURITIES
                              EXCHANGE ACT OF 1934

                For the quarterly period ended September 30, 2000

                                       or


   [  ]     TRANSITION REPORTS PURSUANT TO SECTION 13 OR 15(D) OF THE SECURITIES
                              EXCHANGE ACT OF 1934

For  the  transition period from _____________________ to ______________________


                         Commission File Number: 0-27488

                              INCYTE GENOMICS, INC.
                (FORMERLY KNOWN AS INCYTE PHARMACEUTICALS, INC.)
             (Exact name of registrant as specified in its charter)

           Delaware                                   94-3136539
           --------                                   ----------
(State  or  other  jurisdiction  of       (IRS  Employer  Identification  No.)
incorporation  or  organization)

                                3160 Porter Drive
                          Palo Alto, California  94304
                    (Address of principal executive offices)

                                 (650) 855-0555
              (Registrant's telephone number, including area code)

Indicate by check mark whether the registrant (1) has filed all reports required
by  Section  13  or  15(d)  of  the  Securities  Exchange Act of 1934 during the
preceding 12 months (or for such shorter period that the registrant was required
to  file such reports), and (2) has been subject to such filing requirements for
the  past  90  days.
[X]     Yes     [  ]     No

The  number  of  outstanding shares of the registrant's Common Stock, $0.001 par
value,  was  64,173,242  as  of  September  30,  2000.








                                        INCYTE GENOMICS, INC.

                                                INDEX





PART I: FINANCIAL INFORMATION                                                                   PAGE
- ----------------------------------------------------------------------------------------------  ----
                                                                                             

ITEM 1  Financial Statements - Unaudited

            Consolidated Balance Sheets. . . . . . . . . . . . . . . . . . . . . . . . . . . .     3

            Consolidated Statements of Operations. . . . . . . . . . . . . . . . . . . . . . .     4

            Consolidated Statements of Comprehensive Income (Loss) . . . . . . . . . . . . . .     5

            Consolidated Statements of Cash Flows. . . . . . . . . . . . . . . . . . . . . . .     6

            Notes to Consolidated Financial Statements . . . . . . . . . . . . . . . . . . . .     7

ITEM 2  Management's Discussion and Analysis of Financial Condition and Results of Operations.    12

ITEM 3  Quantitative and Qualitative Disclosures about Market Risk . . . . . . . . . . . . . .    27

PART II: OTHER INFORMATION
- ----------------------------------------------------------------------------------------------

ITEM 1  Legal Proceedings. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .    28

ITEM 2  Changes in Securities. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .    29

ITEM 3  Defaults Upon Senior Securities. . . . . . . . . . . . . . . . . . . . . . . . . . . .    29

ITEM 4  Submission of Matters to a Vote of Security Holders. . . . . . . . . . . . . . . . . .    29

ITEM 5  Other Information. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .    29

ITEM 6  Exhibits and Reports on Form 8-K . . . . . . . . . . . . . . . . . . . . . . . . . . .    29

             Signatures. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .    30

             Exhibit Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .    31






PART  I:  FINANCIAL  INFORMATION
ITEM  1   FINANCIAL  STATEMENTS




                                       INCYTE GENOMICS, INC.
                                    CONSOLIDATED BALANCE SHEETS
                                          (in thousands)
                                            (unaudited)


                                                                              
                                                                    SEPTEMBER 30,    DECEMBER 31,
                                                                         2000            1999
                                                                   ---------------  --------------
ASSETS
Current assets:
      Cash and cash equivalents . . . . . . . . . . . . . . . . .  $      328,377   $      32,220
      Marketable securities - available-for-sale. . . . . . . . .         316,255          34,717
      Accounts receivable, net. . . . . . . . . . . . . . . . . .          21,015          26,608
      Prepaid expenses and other current assets . . . . . . . . .          18,927          15,956
                                                                   ---------------  --------------
            Total current assets. . . . . . . . . . . . . . . . .         684,574         109,501

Property and equipment, net . . . . . . . . . . . . . . . . . . .          96,285          67,293
Long-term investments . . . . . . . . . . . . . . . . . . . . . .          54,590          19,275
Goodwill and other intangible assets, net . . . . . . . . . . . .          12,771          14,564
Deposits and other assets . . . . . . . . . . . . . . . . . . . .          17,704          11,301
                                                                   ---------------  --------------
            Total assets. . . . . . . . . . . . . . . . . . . . .  $      865,924   $     221,934
                                                                   ===============  ==============

LIABILITIES AND STOCKHOLDERS' EQUITY

Current liabilities:
      Accounts payable. . . . . . . . . . . . . . . . . . . . . .  $       11,848   $       6,501
      Accrued compensation. . . . . . . . . . . . . . . . . . . .          10,331           6,731
      Accrued and other current liabilities . . . . . . . . . . .          14,837          11,767
      Deferred revenue. . . . . . . . . . . . . . . . . . . . . .          16,255          26,459
                                                                   ---------------  --------------
            Total current liabilities . . . . . . . . . . . . . .          53,271          51,458

Non-current portion of capital lease obligations and note payable               -             194
Convertible subordinated notes. . . . . . . . . . . . . . . . . .         203,167               -
                                                                   ---------------  --------------
            Total liabilities . . . . . . . . . . . . . . . . . .         256,438          51,652
                                                                   ---------------  --------------

Stockholders' equity:
      Common stock. . . . . . . . . . . . . . . . . . . . . . . .              64              58
      Additional paid-in capital. . . . . . . . . . . . . . . . .         652,743         222,776
      Deferred compensation . . . . . . . . . . . . . . . . . . .            (367)           (806)
      Receivable from stockholders. . . . . . . . . . . . . . . .               -             (20)
      Accumulated other comprehensive income. . . . . . . . . . .          34,580           3,443
      Accumulated deficit . . . . . . . . . . . . . . . . . . . .         (77,534)        (55,169)
                                                                   ---------------  --------------
            Total stockholders' equity. . . . . . . . . . . . . .         609,486         170,282
                                                                   ---------------  --------------
            Total liabilities and stockholders' equity. . . . . .  $      865,924   $     221,934
                                                                   ===============  ==============


See accompanying notes









                               INCYTE GENOMICS, INC.
                       CONSOLIDATED STATEMENTS OF OPERATIONS
                      (in thousands, except per share amounts)
                                    (unaudited)



                                                              
                                         THREE  MONTHS  ENDED  NINE  MONTHS  ENDED
                                            SEPTEMBER  30,        SEPTEMBER  30,
                                             2000       1999       2000       1999
                                         ---------  ---------  ---------  ---------
Revenues. . . . . . . . . . . . . . . .  $ 51,982   $ 35,415   $138,751   $110,938

Costs and expenses:
 Research and development . . . . . . .    51,880     36,874    138,621    104,240
 Selling, general and administrative. .    15,848      8,989     45,669     26,865
                                         ---------  ---------  ---------  ---------
Total costs and expenses. . . . . . . .    67,728     45,863    184,290    131,105
                                         ---------  ---------  ---------  ---------

Loss from operations. . . . . . . . . .   (15,746)   (10,448)   (45,539)   (20,167)

Interest and other income, net. . . . .    11,034      1,308     32,251      4,477
Interest expense. . . . . . . . . . . .    (2,886)       (72)    (7,794)      (226)
Losses from joint venture . . . . . . .         -     (1,854)    (1,283)    (4,447)
                                         ---------  ---------  ---------  ---------
Net loss. . . . . . . . . . . . . . . .  $ (7,598)  $(11,066)  $(22,365)  $(20,363)
                                         =========  =========  =========  =========






Basic and diluted net loss per share. .  $  (0.12)  $  (0.20)  $  (0.36)  $  (0.36)
                                         =========  =========  =========  =========
Shares used in computing
   basic and diluted net loss per share    64,064     56,380     62,825     56,020
                                         =========  =========  =========  =========





                             See accompanying notes



                              INCYTE GENOMICS, INC.
             CONSOLIDATED STATEMENTS OF COMPREHENSIVE INCOME (LOSS)
                                 (in thousands)
                                   (unaudited)


                                                         
                                    THREE  MONTHS  ENDED   NINE  MONTHS  ENDED
                                        SEPTEMBER  30,       SEPTEMBER 30,
                                        2000       1999       2000       1999
                                     --------  ---------  ---------  ---------

Net loss. . . . . . . . . . . . . .  $(7,598)  $(11,066)  $(22,365)  $(20,363)

Other comprehensive income (loss),
   net of taxes:
     Unrealized gains (losses) on
         marketable securities. . .    6,669      1,082     30,321        (13)
     Foreign currency translation
         adjustments. . . . . . . .      933        139        816        (58)
                                     --------  ---------  ---------  ---------
Other comprehensive income (loss) .    7,602      1,221     31,137        (71)
                                     --------  ---------  ---------  ---------
Comprehensive income (loss) . . . .  $     4   $ (9,845)  $  8,772   $(20,434)
                                     ========  =========  =========  =========





                             See accompanying notes





                                    INCYTE GENOMICS, INC.
                            CONSOLIDATED STATEMENTS OF CASH FLOWS
                                        (in thousands)
                                         (unaudited)

                                                                              
                                                                         NINE  MONTHS  ENDED
                                                                            SEPTEMBER  30,
                                                                           2000       1999
                                                                        ----------  ---------

CASH FLOWS FROM OPERATING ACTIVITIES:
     Net loss. . . . . . . . . . . . . . . . . . . . . . . . . . . . .  $ (22,365)  $(20,363)
     Adjustments to reconcile net loss to net cash provided by
         operating activities:
         Depreciation and amortization . . . . . . . . . . . . . . . .     26,163     20,087
         Losses in joint venture . . . . . . . . . . . . . . . . . . .      1,283      4,447
         Gain on sale of long-term investment. . . . . . . . . . . . .     (5,417)      (148)
         Changes in certain assets and liabilities:
              Accounts receivable. . . . . . . . . . . . . . . . . . .      5,593      6,278
              Prepaid expenses and other assets. . . . . . . . . . . .     (6,467)    (9,139)
              Accounts payable . . . . . . . . . . . . . . . . . . . .      5,347     (2,154)
              Accrued and other current liabilities. . . . . . . . . .      6,956      3,427
              Deferred revenue . . . . . . . . . . . . . . . . . . . .    (10,204)    (7,112)
                                                                        ----------  ---------
Net cash provided by (used in) operating activities. . . . . . . . . .        889     (4,677)
                                                                        ----------  ---------

CASH FLOWS FROM INVESTING ACTIVITIES:
     Purchase of long-term investments . . . . . . . . . . . . . . . .     (9,090)    (4,183)
     Proceeds from the sale of long-term investments . . . . . . . . .      7,917      2,644
     Capital expenditures. . . . . . . . . . . . . . . . . . . . . . .    (49,654)   (27,771)
     Purchases of marketable securities. . . . . . . . . . . . . . . .   (449,778)   (23,013)
     Sales and maturities of marketable securities . . . . . . . . . .    168,553     43,058
                                                                        ----------  ---------
Net cash used in investing activities. . . . . . . . . . . . . . . . .   (332,052)    (9,265)
                                                                        ----------  ---------

CASH FLOWS FROM FINANCING ACTIVITIES:
     Proceeds from issuance of stock under the stock option
              purchase plans . . . . . . . . . . . . . . . . . . . . .     26,813      6,184
     Proceeds from issuance of common stock, net of issuance costs . .    403,351          -
     Proceeds from the issuance of convertible subordinated notes, net
              of issuance costs. . . . . . . . . . . . . . . . . . . .    196,800          -
     Repayment of receivable from stockholder. . . . . . . . . . . . .         20         13
     Principal payments on capital lease obligations and note payable.       (480)      (857)
                                                                        ----------  ---------
Net cash provided by financing activities. . . . . . . . . . . . . . .    626,504      5,340
                                                                        ----------  ---------

Effect of exchange rate on cash and cash equivalents . . . . . . . . .        816        (58)
                                                                        ----------  ---------

Net increase (decrease) in cash and cash equivalents . . . . . . . . .    296,157     (8,660)
Cash and cash equivalents at beginning of period . . . . . . . . . . .     32,220     50,048
                                                                        ----------  ---------
Cash and cash equivalents at end of period . . . . . . . . . . . . . .    328,377   $ 41,388
                                                                        ==========  =========




                             See accompanying notes



                                     ======
                              INCYTE GENOMICS, INC.
                   NOTES TO CONSOLIDATED FINANCIAL STATEMENTS
                               SEPTEMBER 30, 2000
                                   (UNAUDITED)

1.  ORGANIZATION  AND  BUSINESS

          Incyte  Genomics, Inc. (the "Company") was incorporated in Delaware in
April  1991  under  the  name  Incyte  Pharmaceuticals,  Inc.  In June 2000, the
Company's  stockholders  approved  the amendment to the Company's Certificate of
Incorporation  to change the Company's name to Incyte Genomics, Inc. The Company
designs,  develops,  and  markets  genomic  information-based  tools  including
database products, genomic data management software tools, microarray-based gene
expression  services  and  genomic  reagents and related services. The Company's
genomic  databases  integrate bioinformatics software with proprietary and, when
appropriate,  publicly available genetic information to create information-based
tools  used  by  pharmaceutical  and  biotechnology  companies  and  academic
researchers  to  understand  disease  and  to  discover  and  develop  drugs.

2.  BASIS  OF  PRESENTATION

The  accompanying unaudited consolidated financial statements have been prepared
in  accordance  with  generally  accepted  accounting  principles  for  interim
financial  information  and with the instructions to Form 10-Q and Article 10 of
Regulation  S-X.  The  consolidated  balance  sheet  as  of  September 30, 2000,
statements  of operations for the three and nine months ended September 30, 2000
and  1999,  statements  of  comprehensive  income  (loss) for the three and nine
months  ended  September  30, 2000 and 1999 and the statements of cash flows for
the nine months ended September 30, 2000 and 1999 are unaudited, but include all
adjustments  (consisting  of  normal  recurring  adjustments)  which the Company
considers necessary for a fair presentation of the financial position, operating
results  and cash flows for the periods presented. The balance sheet at December
31,  1999  has  been  derived  from  audited  financial  statements.

     In July 2000, the Company's board of directors approved a two-for-one stock
split  in  the  form of a stock dividend. Stockholders of record at the close of
August 7, 2000 received one additional share for each share of common stock held
at  the time. The additional shares were distributed to eligible stockholders on
August  31,  2000. All share and per share data have been adjusted retroactively
to  reflect  the  split.

 Although  the  Company  believes  that  the  disclosures  in  these  financial
statements  are  adequate  to  make  the  information  presented not misleading,
certain  information  and  footnote  information  normally included in financial
statements  prepared in accordance with generally accepted accounting principles
have  been  condensed  or  omitted  pursuant to the rules and regulations of the
Securities  and  Exchange  Commission.

     Results  for  any  interim period are not necessarily indicative of results
for any future interim period or for the entire year. The accompanying financial
statements should be read in conjunction with the financial statements and notes
thereto  included in the Company's Annual Report on Form 10-K for the year ended
December  31,  1999.

3.  PROPERTY  AND  EQUIPMENT



                                                                
  Property and equipment consisted of:                 SEPTEMBER 30,   DECEMBER 31,
                                                            2000          1999
                                                            ----          ----
           Office equipment                               $  5,033    $   4,630
           Laboratory equipment                             29,139       25,297
           Computer equipment and software                  88,156       52,565
           Leasehold improvements                           46,771       37,941
                                                           -------      -------
                                                           169,099      120,433
           Less accumulated depreciation and amortization  (72,814)     (53,140)
                                                           --------     --------
                                                          $ 96,285    $  67,293
                                                           ========   ==========



4.  CONVERTIBLE  SUBORDINATED  NOTES

          In  February  2000,  in  a  private placement, the Company issued $200
million  of  convertible  subordinated  notes, which resulted in net proceeds of
approximately  $196.8  million.  The  notes  bear  interest  at  5.5%,  payable
semi-annually  on  February  1  and  August 1, and are due February 1, 2007. The
notes  are subordinated to all senior indebtedness, as defined. The notes can be
converted  at  the option of the holder at an initial conversion price of $67.42
per  share,  subject  to  adjustment. The Company may, at its option, redeem the
notes at any time before February 7, 2003, but only if the Company's stock price
exceeds  150%  of  the  conversion  price  for 20 trading days in a period of 30
consecutive  trading  days. On or after February 7, 2003 the Company may, at its
option,  redeem the notes at specific prices. Holders may require the Company to
repurchase  the  notes  upon  a  change  in  control,  as  defined.

5.  REVENUE  RECOGNITION

          Revenues  are  recognized  when  persuasive evidence of an arrangement
exists, delivery has occurred or services have been rendered, the price is fixed
and  determinable  and  collectibility  is  reasonably  assured.  For  database
collaboration  agreements,  revenues are recognized evenly over the term of each
agreement.  Sales of products that require no ongoing obligations are recognized
upon  transfer of title. Revenues from custom orders, such as custom sequencing,
are  recognized  upon  completion  and delivery. Revenues from genomic screening
services are recognized upon completion. Revenue from gene expression microarray
services includes technology access fees, which are generally recognized ratably
over  the  access term, and usage fees which are recognized at the completion of
key  stages  in the performance of the service, in proportion to costs incurred.
In  accordance with SOP 97-2, software revenue is allocated between license fees
and  maintenance  fees  with  the  license  revenue  being  recognized  upon
installation,  and maintenance fees recognized evenly over the maintenance term.
Revenue  is  deferred  for  fees  received  before  earned.

6.  NET  LOSS  PER  SHARE

     The following is a reconciliation of the numerators and denominators of the
basic  and  diluted  net  loss  per share computations for the periods presented
below.


                                                             

                                         THREE  MONTHS  ENDED  NINE  MONTHS  ENDED
                                             SEPTEMBER  30,      SEPTEMBER  30,
                                           2000       1999      2000       1999
                                         --------  ---------  ---------  ---------
Numerator:
 Net loss . . . . . . . . . . . . . . .  $(7,598)  $(11,066)  $(22,365)  $(20,363)
                                         ========  =========  =========  =========

Denominator:
 Denominator for basic net loss
    per share - weighted-average shares   64,064     56,380     62,825     56,020

 Dilutive potential common shares-
    stock options . . . . . . . . . . .        -          -          -          -
                                         --------  ---------  ---------  ---------

       Denominator for diluted net loss
           per share. . . . . . . . . .   64,064     56,380     62,825     56,020
                                         ========  =========  =========  =========

Basic and diluted net loss per share. .  $ (0.12)  $  (0.20)  $  (0.36)  $  (0.36)
                                         ========  =========  =========  =========




          Options  to  purchase  7,696,420  and 8,395,320 shares of common stock
were  outstanding  at  September  30,  2000  and  1999,  respectively, and notes
convertible  into 2,966,500 shares of common stock were outstanding at September
30,  2000,  but  were  not  included  in the computation of diluted net loss per
share,  as  their  effect  was  anti-dilutive.

7.  JOINT  VENTURE

     In  September  1997,  the  Company  formed  a  joint venture, diaDexus, LLC
("diaDexus"),  with SmithKline Beecham Corporation ("SB") which utilizes genomic
and  bioinformatic  technologies  in  the  discovery  and  commercialization  of
molecular diagnostics. The Company held a 50 percent equity interest in diaDexus
and  accounted  for  the  investment  under the equity method. In July 1999, the
Company  and  SB  each  invested  an additional $2.5 million in diaDexus through
convertible  notes.

On  April  6,  2000,  diaDexus  obtained  additional financing through a private
equity  offering.  In  conjunction with the offering, diaDexus converted from an
LLC  into a corporation and repaid in full the $2.5 million principal amount of,
together  with  accrued  interest  on, the convertible note held by the Company.
Under  diaDexus' new capital structure, the Company no longer has the ability to
exert  significant  influence  over diaDexus. Accordingly, the Company  accounts
for  its  investment  in  diaDexus under the cost method of accounting as of the
date  of  the  financing.

     diaDexus purchased $0.7 million and $2.0 million of contract sequencing and
microarray  services  from  the  Company  in  the  three  and  nine months ended
September  30,  2000,  respectively  and  $1.4  million  and $1.7 million in the
corresponding  periods  in  1999.

8.  SEGMENT  REPORTING

     The  Company  operates  primarily  in  one  reportable segment: the design,
development,  and  marketing of genomic information-based tools, and follows the
requirements  of  SFAS  131,  Disclosures  about  Segments  of an Enterprise and
Related Information. For the three and nine months ended September 30, 2000, the
Company  recorded  revenue  from  customers  throughout the United States and in
Canada,  Austria,  Belgium,  France,  Germany,  Israel,  Japan,  Netherlands,
Switzerland,  and  the  United  Kingdom.  Export  revenue for the three and nine
months  ended  September  30,  2000  were  $10.8  million  and  $32.9  million,
respectively,  and  $7.8 million and $30.5 million for the three and nine months
ended  September  30,  1999,  respectively.

9.  NEW  PRONOUNCEMENTS

          In  June  1998,  the  FASB  issued  Statement  No. 133, Accounting for
Derivative  Instruments  and  Hedging  Activities.  ("SFAS  133").  SFAS  133
established  standards  for  accounting and reporting derivative instruments and
hedging  activities.  The  Company  will  adopt SFAS 133 in the first quarter of
2001,  and  is  evaluating  the effects that SFAS 133 will have on its financial
position  and  results  of  operations.

          In  December 1999, the Securities and Exchange Commission issued Staff
Accounting  Bulletin  No. 101, Revenue Recognition in Financial Statements ("SAB
101").  Among other things, SAB 101 discusses the SEC staff's view on accounting
for non-refundable up-front fees. The Company is currently evaluating SAB 101 as
to  whether it would have any material impact on the Company. Should the Company
determine  that  a  change  in its accounting policy is necessary, such a change
will  be  made  in the fourth quarter of 2000, effective in the first quarter of
2001  and  would  result in a charge to results of operations for the cumulative
effect  of the change. This amount, if recognized, would be recorded as deferred
revenue  and recognized as revenue in future periods. Financial statements prior
to  January  1,  2000  will  not  be  restated.

     In  March  2000, the FASB issued FASB Interpretation No. 44, Accounting for
Certain  Transactions  Involving  Stock Compensation" ("FIN 44"), which contains
rules  designed to clarify the application of APB 25. The Company adopted FIN 44
on  July  1,  2000 and such adoption had no impact on the consolidated financial
position  or  results  of  operations  as  currently  reported.

10.  LITIGATION

     In  January  1998,  Affymetrix,  Inc. ("Affymetrix") filed a lawsuit in the
United  States  District  Court  for  the  District  of  Delaware,  subsequently
transferred  to  the  United  States District Court for the Northern District of
California  in  November  1998,  alleging  infringement  of  U.S.  patent number
5,445,934  (the "'934 Patent") by both Synteni and Incyte. The complaint alleges
that  the  '934  Patent  has  been  infringed  by  the  making,  using, selling,
importing,  distributing  or offering to sell in the U.S. high density arrays by
Synteni  and  Incyte  and that this infringement was willful. Affymetrix seeks a
permanent  injunction  enjoining Synteni and Incyte from further infringement of
the  '934  Patent and, in addition, seeks damages, costs and attorney's fees and
interest.  Affymetrix further requests that any such damages be trebled based on
its  allegation  of  willful  infringement  by  Incyte  and  Synteni.

     In  September  1998,  Affymetrix  filed an additional lawsuit in the United
States  District Court for the District of Delaware, subsequently transferred to
the  United  States  District  Court  for the Northern District of California in
November  1998,  alleging  infringement of the U.S. patent number 5,800,992 (the
"'992  Patent")  and  U.S.  patent  number 5,744,305 (the "'305 Patent") by both
Synteni  and  Incyte.  The  complaint  alleges  that  the  '305  Patent has been
infringed  by the making, using, selling, importing, distributing or offering to
sell  in  the  United States high density arrays by Synteni and Incyte, that the
'992  Patent  has  been  infringed  by  the  use  of  Synteni's and Incyte's GEM
microarray  technology  to  conduct  gene  expression monitoring using two-color
labeling,  and  that such infringement was willful. Affymetrix seeks a permanent
injunction  enjoining  Synteni  and Incyte from further infringement of the '305
and  '992  Patents  and,  in  addition,  Affymetrix  had  sought  a  preliminary
injunction  enjoining  Incyte  and Synteni from using Synteni's and Incyte's GEM
microarray  technology  to  conduct  gene  expression monitoring using two-color
labeling as described in the '992 Patent. Affymetrix's request for a preliminary
injunction was denied in May 1999. The court has scheduled a pretrial hearing in
November  2000  to  determine  how  to  construe  the patent claims that will be
litigated  in  trial, but has not scheduled any other pretrial hearings or set a
trial  date.

     In  April 1999, the Board of Patent Appeals and Interferences of the United
States  Patent  and  Trademark  Office  ("PTO")  declared  interferences between
pending  patent  applications  licensed exclusively to Incyte and the Affymetrix
'305  and  '992  Patents.  An interference proceeding is invoked by the PTO when
more  than  one  patent applicant claims the same invention. The Board of Patent
Appeals  and Interferences evaluates all relevant facts, including those bearing
on  first  to invent, validity, enablement and scope of claims, and then makes a
determination  as  to  who, if anyone, is entitled to the patent on the disputed
invention.  In  September  1999,  the  Board of Patent Appeals and Interferences
determined  that  Incyte  had  not  met its prima facie case, and ruled that the
patents  licensed  by  Incyte  and  Synteni  from  Stanford  University were not
entitled  to  priority  over corresponding claims in the two Affymetrix patents.
Incyte  is  seeking  de  novo review of the Board decisions in the United States
District  Court  for  the  Northern  District  of  California.

     In  August  2000,  Incyte  filed a lawsuit against Affymetrix in the United
States  District  Court  for  the  Northern  District  of  California  alleging
infringement of U.S. patent numbers 5,716,785 and 5,891,636.  The patents relate
to  technologies  used  in  the  amplification of RNA and the generation of gene
expression information.  Affymetrix has filed counterclaims in this lawsuit that
allege,  among other things, that Incyte and Synteni infringe U.S. patent number
6,040,193  (the  "'193  Patent")  and  U.S.  patent  number 5,871,928 (the "'928
Patent").  These  counterclaims  allege  that  Incyte and Synteni infringe these
patents  by  making,  using,  offering  to sell and/or selling within the United
States the inventions claimed in the patents, including, in the case of the '193
Patent,  methods  for  forming  microarrays and, in the case of the '928 Patent,
methods  for  analyzing nucleic acids. The counterclaims also allege that Incyte
and Synteni engaged in acts of unfair competition under California statutory and
common law. Affymetrix seeks a permanent injunction enjoining Incyte and Synteni
from  further  infringement of the '193 Patent and '928 Patent and, in addition,
seeks  damages,  costs  and  attorneys'  fees  and  interest. Affymetrix further
requests  that  any such damages arising from the infringement claims be trebled
based  on  its  allegation  of  willful  infringement  by  Incyte  and  Synteni.

     In  December 1999 and August 2000, Incyte filed lawsuits against Gene Logic
Inc.  ("Gene  Logic")  in  the  United  States  District  Court for the Northern
District  of  California  alleging  patent  infringement.  Gene  Logic has filed
counterclaims alleging, among other things, that Incyte committed acts of unfair
competition  under California statutory and common law.  Gene Logic seeks, among
other  things,  damages,  costs  and  attorneys'  fees.

     Incyte  and  Synteni  believe  they have meritorious defenses and intend to
defend  the  suits  and  counterclaims  brought  by  Affymetrix  and  Gene Logic
vigorously.  However,  there can be no assurance that Incyte and Synteni will be
successful  in  the  defense of these suits and counterclaims. At this time, the
Company cannot reasonably estimate the possible range of any loss resulting from
these suits and counterclaims due to uncertainty regarding the ultimate outcome.
Regardless  of  the  outcome,  this  litigation  has resulted and is expected to
continue  to  result  in  substantial  expenses  and diversion of the efforts of
management  and technical personnel. Further, there can be no assurance that any
license  that  may  be  required  as  a result of this litigation or the outcome
thereof  would  be  made  available on commercially acceptable terms, if at all.


11.  PRIVATE  PLACEMENT  OF  EQUITY

     In  February  2000,  in  a  private placement, the Company issued 4,000,000
shares  of  its  common  stock at a price of $105.50 per share, resulting in net
proceeds  of  $403.4  million.



PART  I:  FINANCIAL  INFORMATION
ITEM  2


                      MANAGEMENT'S DISCUSSION AND ANALYSIS
                OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS


     This  Management's  Discussion  and  Analysis  of  Financial  Condition and
Results  of Operations as of September 30, 2000 and for the three and nine month
periods ended September 30, 2000 and 1999 should be read in conjunction with the
unaudited  condensed  consolidated  financial  statements  and notes thereto set
forth in Item 1 of this report and the section entitled "Management's Discussion
and  Analysis of Financial Condition and Results of Operations" in the Company's
Annual  Report  on  Form  10-K  for  the  year  ended  December  31,  1999.

     When  used  in  this  discussion,  the  words  "expects,"  "anticipates,"
"estimates,"  and  similar  expressions are intended to identify forward-looking
statements.  These  are  statements  that  relate  to future periods and include
statements  as  to  expected  net  losses,  expected cash flows, the adequacy of
capital  resources,  growth in operations, the ability to commercialize products
developed  under  collaborations  and  alliances,  the  ability  to complete the
sequence  of full-length genes in areas of therapeutic interest and file patents
on  these  potential  drug  targets,  the  ability  to  integrate  companies and
operations that it has acquired or will acquire, the ability to implement online
delivery  of  its  database  and software products, the scheduling and timing of
litigation,  the  Company's  strategy  with regard to protecting its proprietary
technology,  the  ability  to compete and respond to rapid technological change,
and  the  performance  and  utility  of  products  and services. Forward-looking
statements  are  subject  to  risks  and  uncertainties  that could cause actual
results to differ materially from those projected. These risks and uncertainties
include,  but  are  not  limited to, the extent to which the pharmaceuticals and
biotechnology  industries  use  genomic information in research and development,
risks  relating to development of new products and services and their use by the
Company's  potential  customers and collaborators, the Company's ability to work
with  its  collaborators  to  meet the goals of collaborators and alliances, the
Company's  ability  to  retain  and  obtain  customers, the cost of accessing or
acquiring  technologies  or  intellectual  property,  the  effectiveness  of the
Company's  sequencing  efforts, the impact of alternative technological advances
and  competition,  uncertainties  associated  with  changes  in  patent  laws,
developments in and expenses related to litigation and interference proceedings,
and  the  matters  discussed  in  "Factors  That  May  Affect  Results."  These
forward-looking  statements  speak  only  as  of  the  date  hereof. The Company
expressly  disclaims  any  obligation  or  undertaking  to  release publicly any
updates  or  revisions  to  any  forward-looking  statements contained herein to
reflect  any  change  in  the  Company's expectations with regard thereto or any
change  in  events,  conditions  or circumstances on which any such statement is
based.

     Incyte,  LifeSeq  and  PathoSeq  are  our  registered  trademarks.  ZooSeq,
LifeTools,  LifeArray,  LifeProt,  LifeExpress,  GeneAlbum  and  GEM  are  our
trademarks.  We also refer to trademarks of other corporations and organizations
in  this  document.

OVERVIEW

     Incyte  Genomics,  Inc.  ("Incyte"  and,  together  with  its  wholly owned
subsidiaries,  the  "Company")  designs,  develops  and  markets  genomic
information-based  products  and  services.  These products and services include
database products, genomic data management software tools, microarray-based gene
expression  services,  genomic  reagents,  and  related  services. The Company's
genomic  databases  integrate bioinformatics software with proprietary and, when
appropriate,  publicly available genetic information to create information-based
products  and  services  used  by pharmaceutical and biotechnology companies and
academic  researchers  to  understand disease and to discover and develop drugs.

     In July 2000, the Company's board of directors approved a two-for-one stock
split  in  the  form  of  a stock dividend. Incyte stockholders of record at the
close  of  August 7, 2000 received one additional share for each share of common
stock  held  at  the  time.  The  additional shares were distributed to eligible
stockholders  on  August  31,  2000.

     Revenues  recognized  by  the  Company  consist  primarily of non-exclusive
database  access  fees related to database agreements. Revenues also include the
sales  of  genomic screening products and services, fees for contract sequencing
services,  research  programs,  sales of genomic data management software tools,
and  fees  for microarray-based gene expression services. The Company's database
agreements  provide for future milestone payments and royalties from the sale of
products  derived  from  proprietary information obtained through the databases.
There  can  be  no  assurance  that  any  database subscriber will ever generate
products  from  information  contained  within  the  databases and thus that the
Company  will  ever  receive  additional  milestone  payments  or royalties. The
Company's  ability  to  maintain and increase revenues depends on its ability to
obtain  additional  database  subscribers,  to  retain  existing subscribers, to
expand  its  product  and service offerings and to expand its customer base. The
loss  of  revenues  from any individual database agreement, if terminated or not
renewed,  could  have  an adverse impact on the Company's results of operations,
although  it  is  not  anticipated  to  have  a  material  adverse impact on the
Company's  business  or  financial  conditions.

     In  an effort to broaden its business, the Company is investing in a number
of new areas, including  SNP discovery, proteomics, expression databases and the
sale  of  its  products  over the internet. Given that many of these address new
markets,  or  involve untested technologies, it is not known if any of them will
generate  revenues  or if the revenues will be sufficient to provide an adequate
return on the investment. Depending on the investment required and the timing of
such  investments,  expenses  or  losses  related  to  these  investments  could
adversely  affect operating results. In addition to its investments in these new
areas, the Company is investing in its sequencing and bioinformatics in 2000. As
a result, the Company expects to report a net loss at least through 2000. If the
costs  of  these  new  and existing programs are greater than anticipated, or if
these programs take longer to complete, or if losses are incurred from strategic
investments,  the  Company  may  incur  losses  in  future  periods,  as  well.

     The  Company  has  made  and  intends  to continue to make strategic equity
investments  in,  and  acquisitions  of,  technologies  and  businesses that are
complementary  to  the  businesses  of the Company. As a result, the Company may
record  losses  or  expenses  related  to  the Company's proportionate ownership
interest  in  such  long-term  equity  investments,  record  charges  for  the
acquisition of in-process technologies, or record charges for the recognition of
the  impairment  in  the  value  of  the securities underlying such investments.

     In  September  1997,  the  Company  formed  a  joint venture, diaDexus, LLC
("diaDexus"),  with SmithKline Beecham Corporation ("SB") which utilizes genomic
and  bioinformatics  technologies  in  the  discovery  and  commercialization of
molecular  diagnostics. Through April 6, 2000, the Company and SB each held a 50
percent  equity  interest  in  diaDexus,  during  which  time the investment was
accounted  for under the equity method of accounting. On April 6, 2000, diaDexus
converted  from an LLC to a corporation and completed a private equity financing
at  which  time  the  Company no longer had significant influence over diaDexus.
Accordingly,  the  Company began accounting for its investment in diaDexus under
the  cost  method  of  accounting  as  of  the  date  of  the  financing.

     In January 1998, the Company announced a relationship relating to the joint
development  of  proteomics  data and related software with Oxford GlycoSciences
plc  ("OGS"). As part of this relationship, the Company has made a total of $5.8
million  in  equity  investments in OGS. As part of the collaborative agreement,
the  Company  reimbursed OGS $5.0 million in 1999 for services rendered and will
reimburse  OGS  up  to $5.0 million in 2000 to offset OGS' expenses for services
rendered.  The  market  prices  of  the securities of the companies in which the
Company  invests are highly volatile and therefore subject to declines in market
value.  The  Company  will continue to evaluate its long-term equity investments
for  impairment  on  a  quarterly  basis.

     The  Company has incurred and may continue to incur substantial expenses in
its  defense  of the lawsuits filed in January and September 1998 by Affymetrix,
Inc.  ("Affymetrix")  alleging  patent infringement by Synteni and Incyte and in
the  lawsuits  filed  by  the Company against Affymetrix in August 2000 and Gene
Logic  Inc.  ("Gene  Logic")  in  December  1999  and  August  2000.

     In  its lawsuits against Incyte and Synteni, Affymetrix seeks a preliminary
injunction enjoining Incyte and Synteni from using certain microarray technology
in  a manner alleged to infringe an Affymetrix patent and a permanent injunction
enjoining  Incyte  and  Synteni  from further infringement of certain Affymetrix
patents.  In  addition,  Affymetrix  seeks  damages,  costs, attorneys' fees and
interest.  Affymetrix  further  requests that any such damages be trebled on its
allegation  of  willful  infringement by Incyte and Synteni. With respect to the
lawsuits  filed by Incyte, Affymetrix has filed counterclaims against Incyte and
Synteni,  and Gene Logic has filed counterclaims against Incyte.  See Note 10 of
Notes  to  Consolidated  Financial  Statements.

     Incyte  and  Synteni  believe  they have meritorious defenses and intend to
defend  these  suits  and  counterclaims  vigorously.  However,  there can be no
assurance  that  Incyte  and  Synteni will be successful in the defense of these
suits.  At  this time, the Company cannot reasonably estimate the possible range
of  any  loss  related  to  these  suits  and  counterclaims  due to uncertainty
regarding  the  ultimate outcome. Regardless of the outcome, this litigation has
resulted  and  is  expected  to  continue  to result in substantial expenses and
diversion  of  the  efforts  of  management  and technical personnel. Any future
litigation  could  result in similar expenses and diversion of efforts. Further,
there  can  be no assurance that any license that may be required as a result of
these  suits and counterclaims or the outcome thereof would be made available on
commercially  acceptable  terms,  if  at  all.

RESULTS  OF  OPERATIONS

     Net loss and diluted net loss per share were $7.6 million and $22.4 million
and  $0.12 and $0.36 per share for the three and nine months ended September 30,
2000, respectively, as compared to $11.1 million and $20.4 million and $0.20 and
$0.36  per share in the corresponding periods in 1999. The number of shares used
to  compute  diluted  net  loss  per  share  for the three and nine months ended
September 30, 2000 was impacted by a private equity offering of 4,000,000 shares
of  common  stock  in  February  2000.

     Revenues  for  the three and nine months ended September 30, 2000 increased
to $52.0 million and $138.8 million, respectively, compared to $35.4 million and
$110.9  million  for  the  corresponding  periods  in  1999.  Revenues  resulted
primarily  from  database  and  related  products  and services and, to a lesser
extent,  from the Company's custom genomics product line, which includes genomic
screening  products and services, gene expression services and custom sequencing
services.  The  increase  in  revenues  was  primarily  attributable to database
agreements  with  new  customers,  revenues  from  the  Pfizer  partner program,
revenues from new products such as expression databases and the in silico Single
Nucleotide  Polymorphism  ("isSNP")  product, as well as increased revenues from
custom  genomics  products  and  services.

     Total  costs and expenses for the three and nine months ended September 30,
2000  increased  to  $67.7 million and $184.3 million, respectively, compared to
$45.9  million  and  $131.1 million for the corresponding periods in 1999. Total
costs  and  expenses may increase in the foreseeable future due to the continued
investment  in  the  development  of new products and services, and due to costs
associated  with  the  expansion  of  the  Company's  customer  base.

     Research  and  development  expenses  for  the  three and nine months ended
September  30, 2000 increased to $51.9 million and $138.6 million, respectively,
compared  to  $36.9  million and $104.2 million for the corresponding periods in
1999.  The increase in research and development expenses resulted primarily from
an  increase  in  bioinformatics and software development efforts, SNP discovery
efforts,  microarray  production,  partner program expenses, expression database
development,  and  the development of internet and e-commerce products. Research
and  development  spending  may  increase as the Company continues to pursue the
development  of  new  database  products  and  services,  expansion  of existing
database  products, increases in sequencing, bioinformatics, expression database
development and SNP discovery operations, development of internet and e-commerce
products  and  services  and  investments  in  new  technologies.

     Selling,  general and administrative expenses for the three and nine months
ended  September  30, 2000 increased to $15.8 million and $45.7 million compared
to  $9.0  million  and  $26.9 million for the corresponding periods in 1999. The
increase in selling, general and administrative expenses resulted primarily from
the growth in the Company's sales and marketing function, including its branding
efforts,  and  increased  personnel  to  support  the  growing complexity of the
Company's  operations.  The  Company's  operations  were  also impacted by legal
expenses  from the patent infringement lawsuits with Affymetrix and GeneLogic of
approximately  $2.2  million and $5.6 million in the three and nine months ended
September  30,  2000,  respectively  and  $1.0  million  and $5.1 million in the
corresponding  periods  in  1999.  The Company expects that selling, general and
administrative  expenses  will  continue  to increase due to continued growth in
marketing,  sales  and customer support functions, legal expenses related to the
Company's  patent  infringement  lawsuits  with  Affymetrix  and  GeneLogic  and
increases  in  personnel  to  support  the  Company's  growing  complexity.

     Interest  and  other  income,  net  for  the  three  and  nine months ended
September  30,  2000  increased to $11.0 million and $32.3 million, respectively
from  $1.3  million  and $4.5 million for the corresponding periods in 1999. The
increase  was  primarily  due to increased interest income resulting from higher
cash  balances  from  the  Company's  convertible  subordinated note and private
equity  offerings in February 2000, and a $5.4 million gain on the exercise of a
warrant  and  March  2000  sale  of  the  underlying common shares in one of its
long-term  strategic  investments.

     Interest  expense  for  the  three and nine months ended September 30, 2000
increased  to $2.9 million and $7.8 million, respectively, from $0.1 million and
$0.2  million for the corresponding periods in 1999. The increase was due to the
issuance  of $200.0 million of convertible subordinated notes issued in February
2000.

     The  Company  incurred  no  losses  from joint venture for the three months
ended  September  30,  2000 and $1.3 million for the nine months ended September
30, 2000 compared to $1.9 million and $4.4 million for the corresponding periods
in  1999.  The  loss  represents  the  Company's  share of diaDexus' losses from
operations. Beginning on April 6, 2000, the Company accounted for its investment
in  diaDexus  under  the cost method of accounting and therefore did not reflect
diaDexus'  losses  in  the Company's statement of operations in the three months
ended  September  30,  2000.

     Due  to  the Company's expected loss in 2000, the Company expects a minimal
effective  annual  income  tax  rate, which is consistent with the corresponding
periods  a  year  ago.

LIQUIDITY  AND  CAPITAL  RESOURCES

     As  of  September  30,  2000,  the Company had $644.6 million in cash, cash
equivalents  and marketable securities, compared to $66.9 million as of December
31,  1999.  The  Company  has  classified  all  of  its marketable securities as
short-term,  as  the  Company  may  choose not to hold its marketable securities
until  maturity  in  order  to  take  advantage  of favorable market conditions.
Available  cash is invested in accordance with the Company's investment policy's
primary  objectives  of  liquidity,  safety  of  principal  and  diversity  of
investments.

     Net  cash  provided  by  operating activities was $0.9 million for the nine
months  ended  September  30, 2000, as compared to net cash used of $4.7 million
for  the nine months ended September 30, 1999. The improvement was primarily due
to the increase in accounts payable and accrued and other current liabilities in
2000  as compared to 1999. These changes were partially offset by the higher net
loss  before  non-cash and non-operating activities and the decrease in deferred
revenues. Net cash generated by operating activities may in the future fluctuate
significantly  from quarter to quarter due to the timing of large prepayments by
database  collaborators.

     The  Company's  investing  activities,  other  than  purchases,  sales  and
maturities  of marketable securities, have consisted of capital expenditures and
long-term  investments. Capital expenditures for the nine months ended September
30,  2000  were $49.7 million as compared to $27.8 million in the same period in
1999,  primarily  due to the expansion of the Company's facilities, increases in
computer  equipment  and software to support operations and its internet related
initiative.  The  Company generated net proceeds of $5.4 million on the exercise
of  a  warrant and March 2000 sale of the underlying common shares in one of its
long  term  strategic  investments and $2.5 million from the repayment of a note
from  diaDexus  in  April 2000. The Company also made long-term strategic equity
investments  in  two companies totaling $9.1 million. Net cash used by investing
activities may in the future fluctuate significantly from quarter to quarter due
to  the  timing  of  investments  in  and sales of strategic equity investments,
capital  expenditures and maturity/sales and purchases of marketable securities.

     In February 2000, in a private placement, the Company issued $200.0 million
of  convertible  subordinated  notes,  which  resulted  in  net  proceeds  of
approximately  $196.8  million.  The  notes  bear  interest  at  5.5%,  payable
semi-annually  on  February  1  and  August 1, and are due February 1, 2007. The
notes  are  subordinated  to  senior  indebtedness, as defined. The notes can be
converted  at  the option of the holder at an initial conversion price of $67.42
per  share,  subject to adjustment. The Company may redeem the notes at any time
before  February  7, 2003, only if the Company's stock price exceeds 150% of the
conversion price for 20 trading days in a period of 30 consecutive trading days.
On  or  after  February  7,  2003  the  Company may redeem the notes at specific
prices. Holders may require the Company to repurchase the notes upon a change in
control,  as  defined.

     In  February  2000,  in  a  private placement, the Company issued 4,000,000
shares  of  its  common  stock at a price of $105.50 per share, resulting in net
proceeds  of  $403.4  million.

     Net  cash  provided by financing activities was $626.5 million for the nine
months  ended  September  30,  2000  as  compared  to  $5.3  million  for  the
corresponding  period  in 1999. The 2000 activity included the net proceeds from
the  private equity offering, the net proceeds from the convertible subordinated
notes,  and  the  proceeds  from the issuance of stock under the Company's stock
option  plans  and  Employee  Stock  Purchase  Plan  of  $26.8  million.

     The  Company  expects to continue to have net cash outflows through 2000 as
it:  invests in its sequencing, bioinformatics, expression database development,
and SNP discovery programs; invests in data-processing-related computer hardware
to  support  its  existing  and  new database products and to enable the on-line
delivery  of  those  products;  continues to seek access to technologies through
investments,  research  and  development  alliances,  license  agreements and/or
acquisitions;  makes  strategic  investments;  continues to make improvements in
existing  facilities; and invests in sales and marketing to broaden its customer
base.

     Based  upon  its  current  plans,  the  Company  believes that its existing
resources  will  be  adequate to satisfy its capital needs for at least the next
twelve  months.  The  Company's  cash  requirements  depend on numerous factors,
including the ability of the Company to attract and retain collaborators for its
databases  and  other  products  and  services;  expenditures in connection with
alliances,  license  agreements  and  acquisitions  of  and  investments  in
complementary  technologies  and  businesses; competing technological and market
developments;  the  cost  of filing, prosecuting, defending and enforcing patent
claims  and  other  intellectual  property  rights;  the  purchase of additional
capital equipment, including capital equipment necessary to ensure the Company's
sequencing  and  microarray  operations remain competitive; capital expenditures
required  to  expand  the  Company's  facilities;  and costs associated with the
integration  of new operations assumed through mergers and acquisitions. Changes
in  the  Company's research and development plans or other changes affecting the
Company's  operating  expenses may result in changes in the timing and amount of
expenditures  of  the  Company's  capital  resources.

EURO  CONVERSION

     A  single  currency  called the euro was introduced in Europe on January 1,
1999.  Eleven  of  the  fifteen member countries of the European Union agreed to
adopt  the  euro  as  their common legal currency on that date. Fixed conversion
rates  between  these  participating countries' existing currencies (the "legacy
currencies")  and  the  euro  were  established  as  of  that  date.  The legacy
currencies  are  scheduled  to  remain legal tender as denominations of the euro
until  at  least  January  1, 2002, but not later than July 1, 2002. During this
transition  period,  parties  may settle transactions using either the euro or a
participating  country's legal currency. The Company will evaluate the impact of
the  euro  conversion on its computer and financial systems, business processes,
market  risk, and price competition. The Company does not expect this conversion
to  have  a  material impact on its results of operations, financial position or
cash  flows.



FACTORS  THAT  MAY  AFFECT  RESULTS

     The  risks  and  uncertainties described below are not the only ones facing
our  company.  Additional  risks  and uncertainties not presently known to us or
that  we  currently  deem  immaterial  may  also impair our business operations.

     If  any  of  the  following  risks  actually occur, our business, financial
condition  and results of operations could be materially and adversely affected.

WE  HAVE HAD ONLY LIMITED PERIODS OF PROFITABILITY, WE EXPECT TO INCUR LOSSES IN
THE  FUTURE  AND  WE  MAY  NOT  RETURN  TO  PROFITABILITY

     We  had  net  losses from inception in 1991 through 1996 and again incurred
net  losses  in  1999  and  the nine months ended September 30, 2000. Because of
those losses, we had an accumulated deficit of $77.5 million as of September 30,
2000. In 2000, we intend to continue to spend significant amounts on new product
and  technology development, including making our products available online, and
to increase our investment in marketing, sales and customer service. The amounts
we  intend  to  spend on new product and technology development include spending
for  our  efforts  to  determine  the  sequence of genes, or genomic sequencing,
determine  gene  functions,  develop  database and software products such as our
gene  expression  database,  discover  SNPs,  expand  research  and  development
alliances,  and  develop electronic commerce products. As a result, we expect to
incur  losses  in  2000.  We may report net losses in future periods as well. We
will  not  return to profitability unless we increase our revenues or reduce our
expenses.

TO  GENERATE  SIGNIFICANT  REVENUES  AND RETURN TO PROFITABILITY, WE MUST OBTAIN
ADDITIONAL  DATABASE  COLLABORATORS  AND  RETAIN  EXISTING  COLLABORATORS

     As  of  September  30,  2000, we had over 20 database agreements. If we are
unable  to  enter  into  additional  agreements  we  may not generate additional
revenues. Also, our current database collaborators may choose not to renew their
agreements  upon  expiration.  Our  database  revenues  are also affected by the
extent  to  which  existing  collaborators  expand  their  agreements with us to
include  our  new  database  products and the extent that existing collaborators
reduce  the number of products or services for which they subscribe. Some of our
database  agreements  require  us  to  meet  performance obligations. A database
collaborator can terminate its agreement before the end of its scheduled term if
we  breach  the agreement and fail to cure the breach within a specified period.

OUR  LONGER-TERM  STRATEGY  FOR  PROFITABILITY  INCLUDES  LICENSES  UNDER  OUR
GENE-RELATED  INTELLECTUAL  PROPERTY  TO  OUR  DATABASE COLLABORATORS, BUT THESE
LICENSES  MAY NOT CONTRIBUTE TO REVENUES FOR SEVERAL YEARS, AND MAY NEVER RESULT
IN  REVENUES

     Part  of  our strategy is to license to database collaborators our know how
and  patent  rights  associated  with the genetic information in our proprietary
databases, for use in the discovery and development of potential pharmaceutical,
diagnostic  or other products. Any potential product that is the subject of such
a  license  will  require several years of further development, clinical testing
and  regulatory  approval  before  commercialization.  Therefore,  milestone  or
royalty  payments  from  these collaborations may not contribute to revenues for
several  years,  if  at  all.

IF  WE  ARE  NOT ABLE TO GENERATE SIGNIFICANT REVENUES FROM EXPRESSION DATABASES
AND  MICROARRAY  SERVICES,  WE  MAY  NOT  BE  PROFITABLE

     We  acquired  Synteni,  Inc. in January 1998 to provide microarray services
and  to  generate information for our gene expression database. The contribution
of  our microarray operations to our operating results depends on whether we can
continue  to obtain high-volume customers for microarray services and expression
databases,  whether  we  can  continue  to  increase  our  microarray production
capacity  in  a  timely  manner and with consistent volumes and quality, and the
costs  associated  with  increasing  our  microarray  production  capacity.

OUR  OPERATING  RESULTS  ARE  UNPREDICTABLE,  WHICH MAY CAUSE OUR STOCK PRICE TO
DECLINE  AND  RESULT  IN  LOSSES  TO  INVESTORS

     Our  operating  results  are  unpredictable and may fluctuate significantly
from  period to period, which may cause our stock price to decline and result in
losses  to investors. Some of the factors that could cause our operating results
to  fluctuate  include:

- -     changes  in  the  demand  for  our  products  and  services, including our
database  business;
- -     the introduction of competitive databases or services, including databases
of  publicly  available,  or  public  domain,  genetic  information;
- -     the  nature, pricing and timing of other products and services provided to
our  collaborators;
- -     acquisition,  licensing  and  other  costs related to the expansion of our
operations,  including  operating  losses  of  acquired  businesses;
- -     losses  and  expenses  related  to  our  investments in joint ventures and
businesses;
- -     regulatory  developments  or changes in public perceptions relating to the
use  of genetic informa-tion and the diagnosis and treatment of disease based on
genetic  information;
- -     changes  in  intellectual  property laws that affect our rights in genetic
information  that  we  sell;
- -     payments  of milestones, license fees or research payments under the terms
of  our  increasing  number  of  external  alliances;  and
- -     expenses  related to, and the results of, litigation and other proceedings
relating  to  intellectual  property  rights,  including  the  lawsuits filed by
Affymetrix  and  counterclaims  filed  by  Affymetrix  and  Gene  Logic.

     We  have significant fixed expenses, due in part to our need to continue to
invest  in  product  development  and  extensive  support  for  our  database
collaborators.  We  may  be  unable  to adjust our expenditures if revenues in a
particular  period fail to meet our expectations, which would harm our operating
results  for  that  period.  Forecasting  operating and integration expenses for
acquired businesses may be particularly difficult, especially where the acquired
business  focuses  on  technologies  that  do not have an established market. We
believe  that  period-to-period  comparisons  of  our financial results will not
necessarily  be  meaningful.  You  should  not  rely  on these comparisons as an
indication  of  our  future  performance. If our operating results in any future
period  fall  below  the  expectations of securities analysts and investors, our
stock  price  will  likely  fall,  possibly  by  a  significant  amount.

OUR INDUSTRY IS INTENSELY COMPETITIVE, AND IF WE DO NOT COMPETE EFFECTIVELY, OUR
REVENUES  MAY  DECLINE

     We  compete  in  markets  that  are  new,  intensely  competitive,  rapidly
changing,  and  fragmented.  Many  of our current and potential competitors have
greater  financial,  human  and other resources than we do. If we cannot respond
quickly  to  changing  customer  requirements,  secure  intellectual  property
positions,  or adapt quickly and obtain access to new and emerging technologies,
our  revenues  may  decline.  Our  competitors  include:

- -     Affymetrix,  Inc.,
- -     Celera  Genomics  Group  of  PE  Corporation,
- -     CuraGen  Corporation,
- -     Gene  Logic  Inc.,
- -     Human  Genome  Sciences,  Inc.,
- -     major  pharmaceutical  companies,  and
- -     universities  and  other  research  institutions,  including  The  SNP
Consortium,  which  is funded by a number of pharmaceutical companies, and those
receiving  funding  from  the  federally  funded  Human  Genome  Project.

     The  human  genome  contains  a finite number of genes. Our competitors may
seek  to  identify,  sequence  and determine the biological function of numerous
genes  in  order  to  obtain  a  proprietary position with respect to new genes.

     In  addition, we face competition from companies who are developing and may
seek  to  develop  new technologies for discovering the functions of genes, gene
expression  information,  including  microarray  technologies,  discovery  of
variations  among  genes  and  related  technologies.  Also, if we are unable to
obtain  the technology we currently use or new advanced technology on acceptable
terms,  but  other  companies  are,  we  will  be  unable  to  compete.

     We  also face competition from providers of software. A number of companies
have  announced  their  intent  to  develop  and  market  software  to  assist
pharmaceutical  companies  and  academic  researchers  in managing and analyzing
their  own genomic data and publicly available data. If pharmaceutical companies
and  researchers  are  able  to  manage  their  own  genomic  data, they may not
subscribe  to  our  databases.

     Extensive  research  efforts  resulting  in  rapid  technological  progress
characterize  the  genomics industry. To remain competitive, we must continue to
expand  our databases, improve our software, and invest in new technologies. New
developments  will  probably  continue, and discoveries by others may render our
services  and  potential  products  noncompetitive.

OUR  REVENUES COULD DECLINE DUE TO PATENT POSITIONS BECOMING PUBLICLY AVAILABLE,
OR  DUE  TO  OUR  COMPETITORS  PUBLICLY  DISCLOSING  THEIR  DISCOVERIES

     Our competitors may discover and establish patent positions with respect to
the  genes  in  our  databases. Our competitors and other entities who engage in
discovering  the way in which genes are ordered in DNA may also make the results
of their sequencing efforts publicly available. Currently, academic institutions
and other laboratories participating in the Human Genome Project make their gene
sequence information available through a number of publicly available databases,
including  the GenBank database. Also, Celera Genomics Group has publicly stated
that  it is committed to make available to the public basic human sequence data.
The  public  availability  of  these  discoveries  or resulting patent positions
covering  substantial  portions  of  the human genome could reduce the potential
value of our databases to our collaborators. It could also impair our ability to
realize  royalties  or  other  revenue from any commercialized products based on
this  genetic  information.

WE  ARE  INVOLVED  IN  PATENT  LITIGATION, WHICH IF NOT RESOLVED FAVORABLY COULD
REQUIRE  US  TO  PAY  DAMAGES  AND  STOP  SELLING  AND USING MICROARRAY PRODUCTS

     We  are currently involved in patent litigation. If we lose this litigation
we  could  be  prevented from producing and using our microarray products and be
required  to pay damages. In January 1998, Affymetrix filed a lawsuit in federal
court  alleging infringement of U.S. patent number 5,445,934 by both Synteni and
Incyte.  The complaint alleges that Synteni and Incyte infringed the '934 Patent
by  making,  using,  selling, importing, distributing or offering to sell in the
United  States  high  density  arrays  and  that  this infringement was willful.
Affymetrix  seeks  a  permanent  injunction  enjoining  Synteni  and Incyte from
further  infringement of the '934 Patent and, in addition, seeks damages, costs,
attorneys'  fees  and interest. Affymetrix also requests triple damages based on
its  allegation  of  willful  infringement  by  Incyte  and  Synteni.

     In September 1998, Affymetrix filed an additional lawsuit in Federal Court,
alleging  Synteni  and  Incyte  infringed  U.S. patent number 5,800,992 and U.S.
patent number 5,744,305. The complaint alleges that Synteni and Incyte infringed
the  '305  Patent by making, using, selling, importing, distributing or offering
to  sell  in the United States high density arrays. It also alleges that Synteni
and  Incyte  infringed the '992 Patent by using their GEM  microarray technology
to  conduct  gene  expression monitoring using two-color labeling, and that this
infringement  was  willful.  Affymetrix  seeks  a permanent injunction enjoining
Synteni  and  Incyte  from further infringement of the '305 and '992 Patents. In
addition,  Affymetrix  had  sought a preliminary injunction enjoining Incyte and
Synteni  from  using Synteni's and Incyte's GEM microarray technology to conduct
gene  expression  monitoring  using  two-color labeling as described in the '992
Patent.  Affymetrix's  request  for  a  preliminary injunction was denied in May
1999.  The  court has scheduled a pretrial hearing in November 2000 to determine
how  to  construe the patent claims that will be litigated in trial, but has not
scheduled  any  other  pretrial  hearings  or  set  a  trial  date.

     In  April 1999, the Board of Patent Appeals and Interferences of the United
States Patent and Trademark Office declared interferences between pending patent
applications  licensed  exclusively  to  us  and  the  Affymetrix  '305 and '992
Patents.  The  Board of Patent Appeals and Interferences invokes an interference
proceeding when more than one patent applicant claims the same invention. During
the  proceeding,  the  Board  of  Patent Appeals and Interferences evaluates all
relevant facts, including those bearing on first to invent, validity, enablement
and  scope  of  claims,  and then makes a determination as to who, if anyone, is
entitled  to  the patent on the disputed invention. In September 1999, the Board
of  Patent  Appeals  and  Interferences determined that we had not met our prima
facie  case,  and  ruled  that  the  patents licensed by Incyte and Synteni from
Stanford  University  were not entitled to priority over corresponding claims in
the  two  Affymetrix  patents.  We  are  seeking  de  novo review of the Board's
decisions  in  the  United  States  District  Court for the Northern District of
California.

     In  August  2000,  we  filed  a lawsuit against Affymetrix in federal court
alleging  infringement  of  U.S.  patent  numbers  5,716,785 and 5,891,636.  The
patents  relate  to  technologies  used  in  the  amplification  of  RNA and the
generation  of  gene expression information.  Affymetrix has filed counterclaims
in  this  lawsuit  that  allege,  among  other  things,  that Incyte and Synteni
infringe  U.S.  patent number 6,040,193 and U.S. patent number 5,871,928.  These
counterclaims  allege  that Incyte and Synteni infringe these patents by making,
using,  offering  to sell and/or selling within the United States the inventions
claimed  in  the patents, including, in the case of the '193 Patent, methods for
forming  microarrays  and, in the case of the '928 Patent, methods for analyzing
nucleic  acids. The counterclaims also allege that Incyte and Synteni engaged in
acts of unfair competition under California statutory and common law. Affymetrix
seeks  a  permanent  injunction  enjoining  Incyte  and  Synteni  from  further
infringement of the '193 Patent and '928 Patent and, in addition, seeks damages,
costs  and  attorneys'  fees  and  interest.  Affymetrix further requests triple
damages  from  the  infringement  claims  based  on  its  allegation  of willful
infringement  by  Incyte  and  Synteni.

     In December 1999 and August 2000, we filed lawsuits against Gene Logic Inc.
in  federal  court  alleging  patent  infringement.  Gene  Logic  has  filed
counterclaims  alleging,  among  other  things, that we committed acts of unfair
competition  under California statutory and common law.  Gene Logic seeks, among
other  things,  damages,  costs  and  attorneys'  fees.

     We  believe we have meritorious defenses and intend to defend the suits and
counterclaims  brought  by  Affymetrix  and  Gene Logic vigorously. However, our
defenses  may  be  unsuccessful. At this time, we cannot reasonably estimate the
possible  range  of any loss resulting from these suits and counterclaims due to
uncertainty  regarding  the  ultimate  outcome.  Regardless of the outcome, this
litigation  has  resulted  and  is expected to continue to result in substantial
expenses and diversion of the efforts of our management and technical personnel.
Further,  there  can  be no assurance that any license that may be required as a
result  of  this  litigation  or  the outcome thereof would be made available on
commercially  acceptable  terms,  if at all. This litigation may also affect our
potential  customers'  willingness  to  use  our  microarray  services  and gene
expression  databases,  which  could  affect  our  revenue.

IF  WE  ARE SUBJECT TO ADDITIONAL LITIGATION AND INFRINGEMENT CLAIMS, THEY COULD
BE  COSTLY  AND  DISRUPT  OUR  BUSINESS

     The technology that we use to develop our products, and the technology that
we  incorporate in our products, may be subject to claims that they infringe the
patents or proprietary rights of others. The risk of this occurring will tend to
increase  as  the  genomics,  biotechnology and software industries expand, more
patents  are  issued  and other companies attempt to discover genes and SNPs and
engage  in  other  genomic-related  businesses.

     As  is  typical  in the genomics, biotechnology and software industries, we
have  received,  and  we will probably receive in the future, notices from third
parties  alleging patent infringement. We believe that we are not infringing the
patent  rights  of  any third parties. Except for Affymetrix, no third party has
filed  a  patent  lawsuit  against  us.

     We  may,  however,  be  involved  in  future  lawsuits  alleging  patent
infringement  or  other  intellectual  property  rights violations. In addition,
litigation  may  be  necessary  to:

- -     assert  claims  of  infringement;
- -     enforce  our  patents;
- -     protect  our  trade  secrets  or  know-how;  or
- -     determine the enforceability, scope and validity of the proprietary rights
of  others.

     We  may be unsuccessful in defending or pursuing these lawsuits. Regardless
of  the  outcome,  litigation  can  be  very  costly and can divert management's
efforts.  An adverse determination may subject us to significant liabili-ties or
require  us to seek licenses to other parties' patents or proprietary rights. We
may  also be restricted or pre-vented from manufacturing or selling our products
and  services.  Further,  we may not be able to obtain any necessary licenses on
acceptable  terms,  if  at  all.

WE MAY BE UNABLE TO PROTECT OUR PROPRIETARY INFORMATION, WHICH MAY RESULT IN ITS
UNAUTHORIZED  USE  AND  A  LOSS  OF  REVENUE

     Our  business  and  competitive position depend upon our ability to protect
our  proprietary  database  information  and  software  technology.  Despite our
efforts  to  protect  this  information and technology, unauthorized parties may
attempt  to  obtain  and use information that we regard as proprietary. Although
our  database  subscription agreements require our subscribers to control access
to our databases, policing unauthorized use of our databases and software may be
difficult.

     We  pursue  a  policy  of  having  our  employees, consultants and advisors
execute proprietary information and invention agreements when they begin working
for  us. However, these agreements may not provide meaningful protection for our
trade  secrets or other proprietary information in the event of unauthorized use
or  disclosure.

     Our means of protecting our proprietary rights may not be adequate, and our
competitors  may:

- -     independently develop substantially equivalent proprietary information and
techniques;
- -     otherwise  gain  access  to  our  proprietary  information;  or
- -     design  around  patents  issued  to us or our other intellectual property.

IF THE INVENTIONS DESCRIBED IN OUR PATENT APPLICATIONS ON FULL-LENGTH OR PARTIAL
GENES  ARE  FOUND TO BE UNPATENTABLE, OUR ISSUED PATENTS ARE NOT ENFORCED OR OUR
PATENT  APPLICATIONS  CONFLICT  WITH  PATENT  APPLICATIONS  FILED BY OTHERS, OUR
REVENUES  MAY  DECLINE

     One  of our strategies is to file patent applications on what we believe to
be  novel full-length and partial genes and SNPs obtained through our efforts to
discover  the  order, or sequence, of the molecules, or bases, of genes. We have
filed  U.S.  patent  applications  in which we claimed partial sequences of some
genes. We have also applied for patents in the U.S. and other countries claiming
full-length  gene  sequences  associated  with cells and tissues involved in our
gene  sequencing program. We hold a number of issued U.S. patents on full-length
genes and one issued U.S. patent claiming multiple partial gene sequences. While
the  United  States  Patent  and  Trademark  Office  has issued patents covering
full-length  genes,  partial  gene  sequences and SNPs, the Patent and Trademark
Office  may  choose to interpret new guidelines for the issuance of patents in a
more  restrictive  manner  in the future, which could impact the issuance of our
pending  patent  applications.  We  also  do  not know whether or how courts may
enforce  our  issued  patents, if that becomes necessary. If a court finds these
types  of  inventions to be unpatentable, or interprets them narrowly, the value
of  our  patent  portfolio  and  possibly  our  revenues  could  be  diminished.

     We  believe  that  some  of our patent applications claim genes and partial
sequences  of  genes  that  may  also be claimed in patent applications filed by
others.  In  some  or  all of these applications, a determination of priority of
inventorship  may need to be decided in an interference before the United States
Patent  and  Trademark  Office,  before  a patent is issued. If a full-length or
partial  length  sequence  for  which  we  seek a patent is issued to one of our
competitors,  we  may  be  unable  to include that full-length or partial length
sequence  on a microarray or in a library of bioreagents. This could result in a
loss  of  revenues.

IF  THE  EFFECTIVE  TERM  OF OUR PATENTS IS DECREASED DUE TO CHANGES IN THE U.S.
PATENT  LAWS  OR IF WE NEED TO REFILE SOME OF OUR PATENT APPLICATIONS, THE VALUE
OF  OUR  PATENT  PORTFOLIO  AND  THE REVENUES WE DERIVE FROM IT MAY BE DECREASED

     The  value  of  our  patents  depends  in part on their duration. A shorter
period  of  patent  protection  could  lessen  the value of our rights under any
patents that we obtain and may decrease the revenues we derive from our patents.
The  U.S.  patent  laws  were  amended  in  1995  to  change  the term of patent
protection  from  17  years  from  patent issuance to 20 years from the earliest
effective  filing  date of the application. Because the average time from filing
to  issuance  of biotechnology applications is at least one year and may be more
than three years depending on the subject matter, a 20-year patent term from the
filing  date may result in substantially shorter patent protection. Also, we may
need to refile some of our applications claiming large numbers of gene sequences
and,  in these situations, the patent term will be measured from the date of the
earliest  priority  application.  This  would  shorten  our  period  of  patent
exclusivity and may decrease the revenues that we might obtain from the patents.

INTERNATIONAL  PATENT  PROTECTION  IS  PARTICULARLY  UNCERTAIN,  AND  IF  WE ARE
INVOLVED  IN  OPPOSITION PROCEEDINGS IN FOREIGN COUNTRIES, WE MAY HAVE TO EXPEND
SUBSTANTIAL  SUMS  AND  MANAGEMENT  RESOURCES

     Biotechnology  patent  law outside the United States is even more uncertain
than  in  the  United  States and is currently undergoing review and revision in
many  countries. Further, the laws of some foreign countries may not protect our
intellectual property rights to the same extent as U.S. laws. We may participate
in  opposition  proceedings  to determine the validity of our foreign patents or
our  competitors  foreign  patents,  which could result in substantial costs and
diversion  of  our  efforts.

IF  OUR  NEW  PROGRAMS  RELATING TO THE ROLE OF GENETIC VARIATION IN DISEASE AND
DRUG  RESPONSE ARE NOT SUCCESSFUL, THEY MAY NOT GENERATE SIGNIFICANT REVENUES OR
RESULT  IN  PROFITABLE  OPERATIONS

     We  recently  began  to  focus  part  of  our  business  on  developing
information-based  and  other  products  and  services  to assist pharmaceutical
companies  in  a  new  and  unproven area: the identification and correlation of
variation  in  genetic  composition  to disease and drug response. We will incur
significant  costs  over  the  next  several years in expanding our research and
development  in  this  area.  These  activities  may  never generate significant
revenues  or  profitable  operations.

     This  new  aspect  of  our  business  will  focus  on  single  nucleotide
polymorphisms  or  SNPs,  one  type  of  genetic  variation. The role of SNPs in
disease  and  drug response is not fully understood, and relatively few, if any,
therapeutic  or  diagnostic  products  based  on  SNPs  have  been developed and
commercialized.  Among  other  things,  demand  in  this  area  may be adversely
affected  by  ethical  and  social  concerns  about  the  confidentiality  of
patient-specific  genetic  information  and about the use of genetic testing for
diagnostic  purposes.

     Except  for  a few anecdotal examples, there is no proof that SNPs have any
correlation to diseases or a patient's response to a particular drug or class of
drug.  Identifying statistically significant correla-tions is time-consuming and
could involve the collection and screening of a large number of patient samples.
We  do  not  know  if the SNPs we have discovered to date are suitable for these
correlation  studies  because  the  variations  we  discovered  may  not  occur
frequently  enough  to  justify  use  by  a  pharmaceutical  company.

     Our  success in this area will also depend upon our ability to develop, use
and  enhance  new  and  relatively unproven technologies. Among other things, we
will need to continue to improve the throughput of our SNP-discovery technology.
We  may  not  be able to achieve these necessary improvements, and other factors
may  impair our ability to develop our SNP-related products and services in time
to  be  competitively  available.

IF  OUR  STRATEGIC  INVESTMENTS  RESULT  IN  LOSSES,  OUR  EARNINGS  MAY DECLINE

     We  make  strategic  investments  in  joint  ventures  or  businesses  that
complement  our  business.  These  investments  may:

- -     often  be made in securities lacking a public trading market or subject to
trading  restrictions,  either  of  which  increases  our  risk  and reduces the
liquidity  of  our  investment;
- -     require  us  to  record  losses  and  expenses  related  to  our ownership
interest,  such  as  the  losses  we  reported in 1997, 1998, 1999 and the first
quarter  of  2000  related  to  our  investment  in  diaDexus,  LLC;
- -     require  us  to  record  charges  related to the acquisition of in-process
technologies or for the impairment in the value of the securities underlying our
investment;  and
- -     require  us  to  invest  greater  amounts  than  anticipated  or to devote
substantial  management  time  to  the  management  of  research and development
relationships  and  joint  ventures.

     The  market values of many of these investments fluctuate significantly. We
evaluate  our  long-term  equity investments for impairment of their values on a
quarterly  basis.  Impairment  could  result  in future charges to our earnings.
These  losses  and  expenses  may  exceed  the  amounts  that  we  anticipated.

BECAUSE  OUR SALES CYCLE IS LENGTHY, WE MAY SPEND A LOT OF TIME AND MONEY TRYING
TO  OBTAIN  NEW OR RENEWED SUBSCRIPTIONS TO OUR PRODUCTS AND SERVICES BUT MAY BE
UNSUCCESSFUL,  WHICH  COULD  HURT  OUR  PROFITABILITY

     Our ability to obtain new subscribers for our databases, software tools and
microarray  and  other  services  or to obtain renewals or additions to existing
subscriptions  depends  upon  prospective  subscribers'  perceptions  that  our
products  and  services can help accelerate drug discovery efforts. Our database
sales  cycle  is  typically  lengthy  because  we need to edu-cate our potential
subscribers  and  sell  the  benefits  of our tools and services to a variety of
constituencies within potential subscriber companies. In addition, each database
subscription  and  microarray  services  agreement  involves  the negotiation of
unique  terms.  We  may  expend  substantial funds and management effort with no
assurance  that  a  new,  renewed or expanded subscription or services agreement
will  result.  These  expenditures,  without increased revenues, will negatively
impact  our  profitability. Actual and proposed consolidations of pharmaceutical
companies  have affected the timing and progress of our sales efforts. We expect
that  future  proposed  consolidations  will  have  similar  effects.

IF  WE  ENCOUNTER  PROBLEMS  IN  MEETING CUSTOMERS' SOFTWARE NEEDS, OUR REVENUES
COULD  DECLINE  AND  WE  COULD  LOSE  OUR  CUSTOMERS'  GOODWILL

     Our  databases  require  software  support  and  will  need  to incorporate
features  determined  by  database  collaborators.  If  we  experience delays or
difficulties  in  implementing  our  database software or collaborator-requested
features, we may be unable to service our collaborators, which could result in a
loss  of  revenues  and  customer  goodwill.

WE  HAVE  ENCOUNTERED  DIFFICULTIES INTEGRATING COMPANIES WE ACQUIRED, AND IF IN
THE  FUTURE  WE  CANNOT SMOOTHLY INTEGRATE BUSINESSES WE ACQUIRE, OUR OPERATIONS
AND  FINANCIAL  RESULTS  COULD  BE  HARMED

     As part of our business strategy, we may acquire other assets, technologies
and  businesses. Our past acquisitions have involved and our future acquisitions
may  involve  risks  such  as  the  following:

- -     we  may  be  exposed  to  unknown  liabilities  of  acquired  companies;
- -     our  acquisition  and  integration costs may be higher than we anticipated
and  may  cause  our  quarterly  and  annual  operating  results  to  fluctuate;
- -     we  may  experience  difficulty and expense in assimilating the operations
and  personnel of the acquired businesses, disrupting our business and diverting
management's  time  and  attention;
- -     we  may be unable to integrate or complete the development and application
of  acquired  technology;
- -     we  may  experience  difficulties  in establishing and maintaining uniform
standards,  controls,  pro-ce-dures  and  policies;
- -     our  relationships  with  key  customers  of  acquired  businesses  may be
impaired, due to changes in management and ownership of the acquired businesses;
- -     we  may  be  unable  to  retain  key employees of the acquired businesses;
- -     we  may  incur  amortization  expenses  if  an  acquisition  results  in
significant  goodwill  or  other  intangible  assets;  and
- -     our  stockholders may be diluted if we pay for the acquisition with equity
securities.

     In  addition, if we acquire additional businesses that are not located near
our  Palo  Alto,  California  head-quarters,  we  may experience more difficulty
integrating  and  managing  the  acquired  businesses'  operations.

IF WE ARE UNABLE TO MANAGE EFFECTIVELY OUR GROWTH, OUR OPERATIONS AND ABILITY TO
SUPPORT  OUR  CUSTOMERS  COULD  BE  AFFECTED,  WHICH  COULD  HARM  OUR  REVENUES

     We expect to continue to experience significant growth in the number of our
employees  and  the  scope  of  our  operations. This growth has placed, and may
continue  to  place,  a significant strain on our management and operations. Our
ability  to manage this growth will depend upon our ability to attract, hire and
retain  skilled  employees.  Our  success will also depend on the ability of our
officers  and key employees to continue to implement and improve our operational
and  other  systems  and  to  hire,  train  and  manage  our  employees.

     In  addition,  we  must continue to invest in customer support resources as
the  number  of  database collaborators and their requests for support increase.
Our  database collaborators typically have world-wide operations and may require
support at multiple U.S. and foreign sites. To provide this support, we may need
to  open  offices  in  additional  locations,  which  could result in additional
burdens  on  our  systems  and  resources.

WE  DEPEND  ON  KEY EMPLOYEES IN A COMPETITIVE MARKET FOR SKILLED PERSONNEL, AND
THE LOSS OF THE SERVICES OF ANY OF OUR KEY EMPLOYEES WOULD AFFECT OUR ABILITY TO
ACHIEVE  OUR  OBJECTIVES

     We  are  highly  dependent  on  the  principal  members  of our management,
operations  and  scientific  staff.  Our  product  development,  operations  and
marketing  efforts  would be delayed or curtailed if we lose the services of any
of  these  people.

     Our future success also will depend in part on the continued service of our
executive  management  team,  key  scientific,  software,  bioinformatics  and
management  personnel  and  our  ability  to  identify,  hire,  train and retain
additional  personnel, including customer service, marketing and sales staff. We
experience  intense  competition  for  qualified  personnel. If we are unable to
continue  to  attract,  train  and  retain these per-sonnel, we may be unable to
expand  our  business.

WE RELY ON A SMALL NUMBER OF SUPPLIERS OF PRODUCTS WE NEED FOR OUR BUSINESS, AND
IF  WE  ARE  UNABLE  TO OBTAIN SUFFICIENT SUPPLIES, WE WILL BE UNABLE TO COMPETE
EFFECTIVELY

     Currently,  we use gene sequencing machines supplied by Molecular Dynamics,
a  subsidiary  of  Amersham  Pharmacia  Biotech, Ltd., and chemicals used in the
sequencing process, called reagents, supplied by Sigma-Aldrich, Inc. in our gene
sequencing  operations.  If  we are not able to obtain additional machines or an
adequate supply of reagents or other materials at commercially reasonable rates,
our  ability  to  identify  genes or genetic variations would be slower and more
expensive.

IF  THE  INFORMATION  WE  OBTAIN  FROM  THIRD-PARTY  DATA  SOURCES IS CORRUPT OR
VIOLATES  THE  LAW,  OUR  REVENUES  AND  OPERATING  RESULTS  COULD  DECLINE

     We  rely on and include in our databases scientific and other data supplied
by  others,  including  publicly  available information from sources such as the
Human  Genome  Project.  This  data could contain errors or other defects, which
could  corrupt  our  databases.  In  addition, we cannot guarantee that our data
sources acquired this information in compliance with legal requirements. If this
data  caused  database  corruption  or  violated legal requirements, we would be
unable  to  sell subscriptions to our databases. These lost sales would harm our
revenue  and  operating  results.

SECURITY  RISKS  IN  ELECTRONIC COMMERCE OR UNFAVORABLE INTERNET REGULATIONS MAY
DETER  FUTURE  USE OF OUR PRODUCTS AND SERVICES, WHICH COULD RESULT IN A LOSS OF
REVENUES

     We  plan to make our products available through our website on the Internet
and  have recently introduced our first online product, the LifeSeq Gene-by-Gene
program. Our ability to provide secure transmissions of confidential information
over  the  Internet  may  limit  online  use of our products and services by our
database  collaborators  as we may be limited by our inability to provide secure
transmissions  of  confidential  information  over  the  Internet.  Advances  in
computer  capabilities  and  new  discoveries  in  the field of cryptography may
comprise  the  security  measures  we  use to protect our website, access to our
databases,  and  transmissions to and from our website. If our security measures
are  breached, our proprietary information or confidential information about our
collaborators  could be misappropriated. Also, a security breach could result in
interruptions  in  our  operations.  The  security  measures we adopt may not be
sufficient  to  prevent  breaches,  and  we may be required to incur significant
costs  to  protect  against security breaches or to alleviate problems caused by
breaches.  Further,  if  the  security of our website, or the website of another
company,  is breached, our collaborators may no longer use the Internet when the
transmission  of  confidential  information  is  involved.  For  example, recent
attacks  by  computer  hackers  on  major e-commerce websites and other Internet
service  providers  have  heightened  concerns  regarding  the  security  and
reliability  of  the  Internet.

     Because  of  the  growth in electronic commerce, the United States Congress
has  held  hearings  on  whether  to  further regulate providers of services and
transactions  in  the  electronic  commerce market. The federal government could
enact laws, rules and regulations that would affect our business and operations.
Individual  states  could also enact laws regulating the use of the Internet. If
enacted, these federal and state laws, rules and regulations could require us to
change  our online business and operations, which could limit our growth and our
development  of  our  online  products.

BECAUSE OUR ACTIVITIES INVOLVE THE USE OF HAZARDOUS MATERIALS, WE MAY BE SUBJECT
TO  COSTLY  ENVIRONMENTAL  LIABILITY  THAT  COULD  EXCEED  OUR  RESOURCES

     Our  research  and development involves the controlled use of hazardous and
radioactive materials and biological waste. We are subject to federal, state and
local laws and regulations governing the use, manufacture, storage, handling and
disposal  of  these  materials  and waste products. Although we believe that our
safety  procedures  for  handling  and  disposing of these materials comply with
legally  prescribed  standards,  the  risk of accidental contamination or injury
from  these  materials  cannot  be  completely  eliminated.  In  the event of an
accident,  we  could be held liable for damages, and this liability could exceed
our  resources.

     We  believe  that  we  are  in  compliance  in  all  material respects with
applicable  environmental  laws  and  regulations and currently do not expect to
make  material  additional  capital  expenditures  for  environmental  control
facilities  in the near term. However, we may have to incur significant costs to
comply  with  current  or  future  environ-mental  laws  and  regulations.

BECAUSE  OUR  REVENUES  ARE  DERIVED  PRIMARILY  FROM  THE  PHARMACEUTICAL  AND
BIOTECHNOLOGY  INDUSTRIES,  OUR  REVENUES  MAY  FLUCTUATE  SUBSTANTIALLY  DUE TO
REDUCTIONS  AND  DELAYS  IN  RESEARCH  AND  DEVELOPMENT  EXPENDITURES

     We  expect  that  our  revenues  in  the foreseeable future will be derived
primarily  from  products  and  services  provided  to  the  pharmaceutical  and
biotechnology  industries as well as to the academic community. Accordingly, our
success will depend in large part upon the success of the companies within these
industries and their demand for our products and services. Our operating results
may  fluctuate  substantially  due  to  reductions  and  delays  in research and
development  expenditures  by  companies  in these industries or by the academic
community.  These  reductions  and  delays  may  result  from  factors  such as:

- -     changes  in  economic  conditions;
- -     consolidation  in  the  pharmaceutical  industry;
- -     changes  in  the  regulatory  environment,  including governmental pricing
controls,  affecting  health  care  and  health  care  providers;
- -     pricing  pressures;
- -     market-driven  pressures on companies to consolidate and reduce costs; and
- -     other  factors  affecting  research  and  development  spending.

     These  factors  are  not  within  our  control.

IF  A  NATURAL  DISASTER  OCCURS,  WE  MAY  HAVE  TO CEASE OR LIMIT OUR BUSINESS
OPERATIONS

     We  conduct our database, sequencing and a significant portion of our other
activities  at  our  facilities  in  Palo  Alto,  California,  and  conduct  our
microarray-related  activities  at  our  facilities in Fremont, California. Both
locations  are  in  a  seismically  active  area.  Although we maintain business
interruption  insurance, we do not have or plan to obtain earth-quake insurance.
A  major  catastrophe,  such  as  an earthquake or other natural disaster, could
result  in  a  pro-longed  interruption  of  our  business.

WE  HAVE  A LARGE AMOUNT OF DEBT AND OUR DEBT SERVICE OBLIGATIONS MAY PREVENT US
FROM  TAKING  ACTIONS  THAT  WE  WOULD  OTHERWISE  CONSIDER  TO  BE  IN OUR BEST
INTERESTS.

     As  of  September  30,  2000,  we  had

- -     total  consolidated  debt  of  approximately  $203.2  million,
- -     stockholders'  equity  of  approximately  $609.5  million,  and
- -     a deficiency of earnings available to cover fixed charges of $13.3 million
for  the  nine  months  ended  September  30,  2000.

     A  variety  of  uncertainties  and  contingencies  will  affect  our future
performance,  many  of  which  are  beyond  our  control.  We  may  not generate
sufficient  cash  flow  in the future to enable us to meet our anticipated fixed
charges,  including  our  debt  service  requirements  with  respect to the $200
million  of  convertible  subordinated  notes  we  sold  in  February  2000. The
following  table  shows  the  aggregate  amount  of  our  principal and interest
payments  due  in  each  of  the  five  years:




                      
Year  Aggregate Principal   Aggregate Interest
- ----  --------------------  -------------------

2000  $            796,000  $         5,531,000
2001                    --           11,000,000
2002                    --           11,000,000
2003                    --           11,000,000
2004                    --           11,000,000




     Our  substantial  leverage could have significant negative consequences for
our  future  operations,  including:

- -     increasing  our  vulnerability  to  general  adverse economic and industry
conditions;
- -     limiting  our  ability  to  obtain  additional  financing;
- -     requiring  the  dedication  of  a substantial portion of our expected cash
flow from operations to service our indebtedness, thereby reducing the amount of
our  expected  cash flow available for other purposes, including working capital
and  capital  expenditures;
- -     limiting  our  flexibility in planning for, or reacting to, changes in our
business  and  the  industry  in  which  we  compete;  or
- -     placing  us  at  a  possible  competitive  disadvantage  compared  to less
leveraged  competitors  and  competitors  that  have  better  access  to capital
resources.



PART  I:  FINANCIAL  INFORMATION
ITEM  3:  QUANTITATIVE  AND  QUALITATIVE  DISCLOSURES  ABOUT  MARKET  RISK

     The  Company  is  exposed  to  interest  rate  risk  primarily  through its
investments in short-term marketable securities and its convertible subordinated
notes.  The  Company's investment policy calls for investment in short term, low
risk  instruments. As of September 30, 2000, investment in marketable securities
was  $316.3 million. Due to the nature of these investments and notes, if market
interest  rates were to increase immediately and uniformly by 10% from levels as
of  September  30, 2000, the change in the fair value of the portfolio would not
be  material.

The Company is exposed to equity price risks on the marketable portion of equity
securities  included  in its portfolio of investments and long-term investments,
entered into to further its business and strategic objectives. These investments
are  in  small  capitalization  stocks  in  the  pharmaceutical/biotech industry
sector,  in  companies  with  which  the Company has research and development or
licensing  agreements.  The  Company  typically  does  not  attempt to reduce or
eliminate  its  market  exposure  on these securities. As of September 30, 2000,
long-term  investments  were  $54.6  million.

The  Company  typically does not hedge its foreign currency exposure. Management
does  not  believe  that  the  Company's  exposure  to  foreign  currency  rate
fluctuations  is  material.



PART  II:  OTHER  INFORMATION

ITEM  1     Legal  Proceedings

          In  January  1998,  Affymetrix, Inc. ("Affymetrix") filed a lawsuit in
the  United  States  District  Court  for the District of Delaware, subsequently
transferred  to  the  United  States District Court for the Northern District of
California  in  November  1998,  alleging  infringement  of  U.S.  patent number
5,445,934  (the "'934 Patent") by both Synteni and Incyte. The complaint alleges
that  the  '934  Patent  has  been  infringed  by  the  making,  using, selling,
importing,  distributing  or offering to sell in the U.S. high density arrays by
Synteni  and  Incyte  and that such infringement was willful. Affymetrix seeks a
permanent  injunction  enjoining Synteni and Incyte from further infringement of
the  '934  Patent and, in addition, seeks damages, costs and attorneys' fees and
interest.  Affymetrix further requests that any such damages be trebled based on
its  allegation  of  willful  infringement  by  Incyte  and  Synteni.

          In  September  1998,  Affymetrix  filed  an  additional lawsuit in the
United  States  District  Court  for  the  District  of  Delaware,  subsequently
transferred  to  the  United  States District Court for the Northern District of
California  in  November  1998,  alleging infringement of the U.S. patent number
5,800,992  (the  "'992  Patent")  and  U.S.  patent  number 5,744,305 (the "'305
Patent")  by both Synteni and Incyte. The complaint alleges that the '305 Patent
has  been  infringed  by  the making, using, selling, importing, distributing or
offering to sell in the United States high density arrays by Synteni and Incyte,
that the '992 Patent has been infringed by the use of Synteni's and Incyte's GEM
microarray  technology  to  conduct  gene  expression monitoring using two-color
labeling,  and  that such infringement was willful. Affymetrix seeks a permanent
injunction  enjoining  Synteni  and Incyte from further infringement of the '305
and  '992  Patents  and,  in  addition,  Affymetrix  had  sought  a  preliminary
injunction  enjoining  Incyte  and Synteni from using Synteni's and Incyte's GEM
microarray  technology  to  conduct  gene  expression monitoring using two-color
labeling as described in the '992 Patent. Affymetrix's request for a preliminary
injunction was denied in May 1999. The court has scheduled a pretrial hearing in
November  2000  to  determine  how  to  construe  the patent claims that will be
litigated  in  trial, but has not scheduled any other pretrial hearings or set a
trial  date.

          In  April  1999,  the Board of Patent Appeals and Interferences of the
United States Patent and Trademark Office ("PTO") declared interferences between
pending  patent  applications  licensed exclusively to Incyte and the Affymetrix
'305  and  '992  Patents.  An interference proceeding is invoked by the PTO when
more  than  one  patent applicant claims the same invention. The Board of Patent
Appeals  and Interferences evaluates all relevant facts, including those bearing
on  first  to invent, validity, enablement and scope of claims, and then makes a
determination  as  to  who, if anyone, is entitled to the patent on the disputed
invention.  In  September  1999,  the  Board of Patent Appeals and Interferences
determined  that  Incyte  had  not  met its prima facie case, and ruled that the
patents  licensed  by  Incyte  and  Synteni  from  Stanford  University were not
entitled  to  priority  over corresponding claims in the two Affymetrix patents.
The  Company  is  seeking  de  novo  review of the Board decisions in the United
States  District  Court  for  the  Northern  District  of  California.

     In  August  2000,  Incyte  filed a lawsuit against Affymetrix in the United
States  District  Court  for  the  Northern  District  of  California  alleging
infringement of U.S. patent numbers 5,716,785 and 5,891,636.  The patents relate
to  technologies  used  in  the  amplification of RNA and the generation of gene
expression information.  Affymetrix has filed counterclaims in this lawsuit that
allege,  among other things, that Incyte and Synteni infringe U.S. patent number
6,040,193  (the  "'193  Patent")  and  U.S.  patent  number 5,871,928 (the "'928
Patent").  These  counterclaims  allege  that  Incyte and Synteni infringe these
patents  by  making,  using,  offering  to sell and/or selling within the United
States the inventions claimed in the patents, including, in the case of the '193
Patent,  methods  for  forming  microarrays and, in the case of the '928 Patent,
methods  for  analyzing nucleic acids. The counterclaims also allege that Incyte
and Synteni engaged in acts of unfair competition under California statutory and
common law. Affymetrix seeks a permanent injunction enjoining Incyte and Synteni
from  further  infringement of the '193 Patent and '928 Patent and, in addition,
seeks  damages,  costs  and  attorneys'  fees  and  interest. Affymetrix further
requests  that  any such damages arising from the infringement claims be trebled
based  on  its  allegation  of  willful  infringement  by  Incyte  and  Synteni.

          In  December  1999 and August 2000, Incyte filed lawsuits against Gene
Logic  Inc.  ("Gene Logic") in the United States District Court for the Northern
District  of  California  alleging  patent  infringement.  Gene  Logic has filed
counterclaims alleging, among other things, that Incyte committed acts of unfair
competition  under California statutory and common law.  Gene Logic seeks, among
other  things,  damages,  costs  and  attorneys'  fees.

          Incyte  and  Synteni believe they have meritorious defenses and intend
to  defend  the  suits  and  counterclaims  brought by Affymetrix and Gene Logic
vigorously.  However,  there can be no assurance that Incyte and Synteni will be
successful  in  the  defense of these suits and counterclaims. At this time, the
Company cannot reasonably estimate the possible range of any loss resulting from
these suits and counterclaims due to uncertainty regarding the ultimate outcome.
Regardless  of  the  outcome,  this  litigation  has resulted and is expected to
continue  to  result  in  substantial  expenses  and diversion of the efforts of
management  and technical personnel. Further, there can be no assurance that any
license  that  may  be  required as a result of this suit or the outcome thereof
would  be  made  available  on  commercially  acceptable  terms,  if  at  all.

ITEM  2     Changes  in  Securities

(a)     Not  applicable

(b)     Not  applicable

(c)     Not  applicable

(d)     Not  applicable

ITEM  3     Defaults  Upon  Senior  Securities
     None

ITEM  4     Submission  of  Matters  to  a  Vote  of  Security  Holders

None

ITEM  5     Other  Information
     None

ITEM  6     Exhibits  and  Reports  on  Form  8-K.

     a)     Exhibits
          See  Exhibit  Index  on  Page  31

     b)     Reports  on  Form  8-K

The  Company  filed  3  reports on Form 8-K during the fiscal quarter covered by
this  report,  as  follows:

(i)     Current  Report on Form 8-K filed on July 25, 2000, reporting under item
5  the  Company's  announcement  of the Company's board of directors approving a
two-for-one  stock  split  in  the  form  of  a  stock  dividend.

(ii)     Current  Report  on  Form 8-K filed on August 25, 2000, reporting under
item  5  the Company's announcement that Dr. Randy Scott will assume the role of
Chairman  of  the Board and step down as President and Chief Scientific Officer.





Pursuant  to  the  requirements  of  the  Securities  Exchange  Act of 1934, the
registrant  has  duly  caused  this  report  to  be  signed on its behalf by the
undersigned  thereunto  duly  authorized.


                                                           INCYTE GENOMICS, INC.



Date:     November  14,  2000     By:       /s/  Roy  A.  Whitfield
                                           -------------------------
                                           Roy  A.  Whitfield
                                           Chief  Executive  Officer


Date:     November  14,  2000     By:       /s/  John  M.  Vuko
                                          --------------------------
                                          John  M.  Vuko
                                          Chief  Financial  Officer


                              INCYTE GENOMICS, INC.

                                  EXHIBIT INDEX








     NO.                    EXHIBIT                    PAGE
     ---  -------------------------------------------  ----
                                              

     27  Financial Data Schedule, September 30, 2000    32