Exhibit 99.1 December 7, 2004 R.W. Baird & Co. Incorporated 125 S. Kalamazoo Mall Kalamazoo, MI 49007 Ladies/Gentlemen: Effective today I hereby amend each of my two "Pre-Programmed Executive Stock Sale Plans", delivered to you on or about November 29, 2004 covering, respectively, 6,860 and 6,859 shares of the common stock of Ligand Pharmaceuticals Incorporated, as follows: On page one of each Plan, in paragraph 1 "Plan Term", the starting date "April 1, 2005" is deleted and replaced with "May 12, 2005". On page one of each Plan, in paragraph 1 "Plan Term", the termination date "November 1, 2005" is deleted and replaced with "November 12, 2005". Sincerely, /S/ MARTIN D. MEGLASSON Martin D. Meglasson, Ph.D. Vice President, Discovery Research Corporate acknowledgement: /S/ WARNER R. BROADDUS Warner R. Broaddus General Counsel, Vice President, and Secretary