UNITED STATES SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q/A (X) Quarterly Report Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 For Quarterly Period Ended September 30, 2000 ----------------------- (_) Transition Report Pursuant to Section 13 or 15(d) of the Securities Exchange Act of 1934 For the transition period from _______________ to ________________ Commission File Number 000-30361 --------- Illumina, Inc. - -------------------------------------------------------------------------------- (Exact name of registrant as specified in its charter) Delaware 33-0804655 - ---------------------------- ------------------ (State or other jurisdiction of (I.R.S. Employer incorporation or organization) Identification No.) 9390 Towne Centre Drive San Diego, CA 92121-3015 - -------------------------------------------------------------------------------- (Address of principal executive offices) (Zip Code) (858) 587-4290 -------------- (Registrant's telephone number, including area code) Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days. Yes X No __ - Indicate the number of shares outstanding of each of issuer's classes of common stock, as of the latest practicable date. Common Stock, $0.01 par value 31,939,420 Shares - ------------------------------- ------------------- Class Outstanding at September 30, 2000 ILLUMINA, INC. INDEX ----- Page No. -------- PART I. FINANCIAL INFORMATION Item 1. Financial Statements Condensed Balance Sheets - September 30, 2000 (unaudited) and December 31, 1999 3 Condensed Statements of Operations - Three and Nine Month Periods Ended September 30, 2000 and 1999 (unaudited) 4 Condensed Statements of Cash Flows - Nine Month Periods Ended September 30, 2000 and 1999 (unaudited) 5 Notes to Condensed Financial Statements 6 Signatures 9 Index of Exhibits 10 2 PART I. FINANCIAL INFORMATION Item 1. Financial Statements ILLUMINA, INC. Condensed Balance Sheets ------------------------ September 30, December 31, 2000 1999 ------------ ------------ ASSETS (unaudited) (Note) Current assets: Cash and cash equivalents $121,582,842 $21,164,114 Investments 2,585,799 11,924,163 Note receivable 6,200,000 -- Other current assets 2,025,477 404,768 ------------ ----------- Total current assets 132,394,118 33,493,045 Property and equipment, net 2,125,131 291,314 Intangible and other assets, net 445,755 110,299 ------------ ----------- Total assets $134,965,004 $33,894,658 ============ =========== LIABILITIES AND STOCKHOLDERS' EQUITY Liabilities: Accounts payable and accrued liabilities $ 1,946,518 $ 612,408 Current portion of equipment note obligations 252,628 -- ------------ ----------- Total current liabilities 2,199,146 612,408 Equipment note obligations, less current portion 955,016 -- Deferred revenue 5,000,000 1,250,000 Commitments Stockholders' equity 126,810,842 32,032,250 ------------ ----------- Total liabilities and stockholders' equity $134,965,004 $33,894,658 ============ =========== Note: The Balance Sheet at December 31 has been derived from the audited financial statements as of that date. See accompanying notes. 3 ILLUMINA, INC. Condensed Statements of Operations ---------------------------------- (Unaudited) Three months ended Nine months ended September 30, September 30, ----------------------------- ----------------------------- 2000 1999 2000 1999 ----------- ----------- ------------ ----------- Revenue $ 662,589 $ 100,269 $ 824,446 $ 272,365 Costs and expenses: Research and development (exclusive of stock based compensation of $951,015 and $157,617 for the three months ended September 30, 2000 and 1999, respectively, and $2,279,357 and $283,873 for the nine months ended September 30, 2000 and 1999, respectively) 3,048,305 1,191,447 9,720,232 2,733,817 General and administrative (exclusive of stock based compensation of $853,244 and $21,314 for the three months ended September 30, 2000 and 1999, respectively, and $2,560,204 and $124,048 for the nine months ended September 30, 2000 and 1999, respectively) 1,192,307 274,200 2,749,193 823,266 Amortization of deferred compensation and other non-cash compensation charges 1,804,259 178,931 4,839,561 407,921 ----------- ----------- ------------ ----------- Total costs and expenses 6,044,871 1,644,578 17,308,986 3,965,004 ----------- ----------- ------------ ----------- Loss from operations (5,382,282) (1,544,309) (16,484,540) (3,692,639) Interest income, net 1,507,629 65,189 2,494,491 252,605 ----------- ----------- ------------ ----------- Net loss $(3,874,653) $(1,479,120) $(13,990,049) $(3,440,034) =========== =========== ============ =========== Historical net loss per share, basic and diluted $ (0.19) $ (0.94) $ (1.66) $ (2.75) =========== =========== ============ =========== Shares used in calculating historical net loss per share, basic and diluted 20,548,421 1,575,504 8,429,597 1,251,465 =========== =========== ============ =========== Pro forma net loss per share, basic and diluted $ (0.15) $ (0.11) $ (0.61) $ (0.26) =========== =========== ============ =========== Shares used in calculating pro forma net loss per share, basic and diluted 26,408,602 13,411,801 22,940,522 13,087,762 =========== =========== ============ =========== See accompanying notes. 4 ILLUMINA, INC. Condensed Statements of Cash Flows ---------------------------------- (Unaudited) Nine months ended September 30, --------------------------- 2000 1999 ------------ ------------ Operating activities: Net loss $(13,990,049) $(3,440,034) Adjustments to reconcile net loss to net cash used in operating activities: Issuance of stock for technology and services 1,722,000 11,336 Depreciation and amortization 308,168 29,962 Amortization of premium (discount) on investments (71,535) 60,967 Amortization of deferred compensation and other 4,839,561 407,921 non-cash compensation charges Changes in operating assets and liabilities: Current assets (1,620,710) (51,996) Deferred revenue 3,750,000 -- Other assets (363,856) -- Accounts payable and accrued liabilities 1,334,110 74,000 ------------ ----------- Net cash used in operating activities (4,092,311) (2,907,844) ------------ ----------- Investing activities: Purchase of investment securities (10,295,209) (6,727,005) Maturity of investment securities 19,715,720 2,725,000 Note receivable (6,200,000) -- Purchase of property and equipment (2,113,583) (11,767) ------------ ----------- Net cash provided by (used in) investing activities 1,106,928 (4,013,772) ------------ ----------- Financing activities: Borrowings under equipment and convertible note 1,317,682 1,000,000 obligations Payments on equipment note obligations (110,038) -- Proceeds from stock subscription receivable 4,500 -- Proceeds from issuance of common stock, net of 102,191,967 4,180 repurchased shares and offering expenses ------------ ----------- Net cash provided by financing activities 103,404,111 1,004,180 ------------ ----------- Net increase (decrease) in cash and cash 100,418,728 (5,917,436) equivalents Cash and cash equivalents at beginning of period 21,164,114 8,233,729 ------------ ----------- Cash and cash equivalents at end of period $121,582,842 $ 2,316,293 ============ =========== See accompanying notes. 5 ILLUMINA, INC. Notes to Condensed Financial Statements (continued) (Unaudited) Note 1. General Illumina, Inc. (the "Company") was incorporated on April 28, 1998. The Company is developing next-generation tools that will permit the large-scale analysis of genetic variation and function. The Company's proprietary BeadArray technology will provide the throughput, cost effectiveness and flexibility necessary to enable researchers in the life sciences and pharmaceutical industries to perform the billions of tests necessary to extract medically valuable information from advances in genomics. This information will correlate genetic variation and gene function with particular disease states, enhancing drug discovery, allowing diseases to be detected earlier and more specifically and permitting better choices of drugs for individual patients. In addition to the life sciences and pharmaceutical industries, the Company's technology will have applicability across a wide variety of industries, including agriculture, petrochemicals and food, flavor and beverages. The unaudited financial statements included herein have been prepared by the Company pursuant to the rules and regulations of the Securities and Exchange Commission. Certain information and footnote disclosures normally included in financial statements prepared in accordance with generally accepted accounting principles have been condensed or omitted pursuant to such rules and regulations. In management's opinion, the accompanying financial statements have been prepared on a basis consistent with the audited financial statements and contain adjustments, consisting of only normal, recurring accruals, necessary to present fairly the Company's financial position and results of operations. Interim financial results are not necessarily indicative of results anticipated for the full year. These unaudited financial statements should be read in conjunction with the Company's 1999 audited financial statements and footnotes included in the Company's Registration Statement on Form S-1, as amended (File No. 333-33922). The preparation of financial statements in conformity with generally accepted accounting principles requires that management make estimates and assumptions that affect the reported amounts of assets and liabilities and disclosure of contingent assets and liabilities at the date of the financial statements and the reported amount of expenses incurred during the reporting period. Actual results could differ from those estimates. Note 2. Stock Based Compensation As permitted by SFAS No. 123, Accounting for Stock-Based Compensation, the Company accounts for common stock granted, and restricted stock sold, to employees, founders and directors using the intrinsic value method and, thus, recognizes no compensation expense for options granted, or restricted stock sold, with exercise prices equal or greater than the fair market value of the Company's common stock at the date of grant. The Company has recorded deferred stock compensation related to certain stock options, and restricted stock, which were granted with exercise prices below estimated fair value, which is being amortized on an accelerated amortization methodology in accordance with FIN 28. Deferred compensation for options granted, and restricted stock sold, to consultants has been determined in accordance with SFAS No. 123 and EITF 96-18 as the fair value of the consideration received or the fair value of the equity instruments issued, whichever is more reliably measured. Deferred charges for options granted, and restricted stock sold, to consultants are periodically remeasured as the underlying options vest. 6 ILLUMINA, INC. Notes to Condensed Financial Statements (continued) (Unaudited) Since the inception of the Company, in connection with the grant of certain stock options and sales of restricted stock to employees, founders and directors through September 30, 2000, the Company has recorded deferred stock compensation totaling approximately $18.1 million, representing the difference between the exercise or purchase price and the fair value of the Company's common stock as estimated by the Company's management for financial reporting purposes on the date such stock options were granted or restricted common stock was sold. Deferred compensation is included as a reduction of stockholders equity and is being amortized to expense over the vesting period of the options and restricted stock. The Company recorded deferred compensation of $13.5 million and $0.7 million related to grants of stock options and sales of restricted stock in the nine months ended September 30, 2000 and 1999, respectively. During the nine months ended September 30, 2000, the Company amortized approximately $4.0 million of this deferred compensation. In February 2000, the Company modified the consulting agreements with all of its outside consultants. Under the modified consulting agreements, the consultants agreed to pay a substantial financial penalty if they did not fulfill their performance obligations under the agreements. The amount of the penalty was determined for each consultant based on the intrinsic value of the unvested restricted common stock based on the original purchase price and the fair value of the common stock as estimated by the Company's management for financial reporting purposes on the date of modification. Each consultant had already vested a portion of the original restricted common stock in accordance with the services already provided, and the amounts related to the vested common stock was expensed. Deferred consultant compensation of $3.0 million related to unvested stock was recorded in February 2000 and is amortized ratably over the contracted service periods. The Company amortized approximately $558,000 of this deferred compensation in the nine months ended September 30, 2000. Prior to the modification of the consulting agreements, the Company recorded approximately $315,000 of compensation expense related to restricted stock sold to consultants in the nine months ended September 30, 2000. Note 3. Net Loss per Share Basic and diluted net loss per common share are presented in conformity with SFAS No. 128. Earnings per Share, and SAB 98, for all periods presented. Basic and diluted net loss per share has been computed using the weighted- average number of shares of common stock outstanding during the period, less shares subject to repurchase. Pro forma basic and diluted net loss per common share, as presented in the statements of operations, has been computed as described above, and also gives effect to the conversion of preferred stock which automatically converted to common stock upon the closing of the Company's initial public offering in July 2000, as of the original date of issuance. Note 4. Initial Public Offering On July 28, 2000 the Company completed an initial public offering in which it sold 6,000,000 shares of common stock at $16 per share for net proceeds of approximately $88.0 million, net of underwriting discounts, commissions and estimated offering expenses. Upon the closing of the offering, all the Company's convertible preferred stock converted into 18,836,297 shares of common stock. After the offering, the Company's authorized capital consisted of 120,000,000 shares of common stock, $0.01 par value, and 10,000,000 shares of preferred stock, $0.01 par value. 7 ILLUMINA, INC. Notes to Condensed Financial Statements (continued) (Unaudited) On August 2, 2000 the underwriters exercised an over-allotment option to purchase an additional 900,000 shares resulting in net proceeds of approximately $13.4 million. The Company has invested the net proceeds of the initial public offering primarily in money market funds. Note 5. Commitments The Company leases approximately 35,000 square feet of office and laboratory facilities under an operating lease expiring as to 15,000 square feet in August 2001 and the remaining 20,000 square feet in August 2002. In July, the Company entered into an agreement to lease a total of 97,000 square feet in buildings that will be constructed over the next year. The lease contains an option to purchase the buildings together with additional land on the same site. The Company has provided the lessor with a secured letter of credit for $1.5 million and a $6.2 million secured interest bearing loan, which will mature no later than September 2001. Upon exercise of the option, which expires December 1, 2000, the Company would be required to make an additional cash payment of $2.3 million and the note receivable would convert to part of the cash consideration for the property; an additional $3.0 million would be required in August 2001, the estimated closing date of the sale. Note 6. Asset and Technology Purchase In March 2000, the Company signed an agreement to acquire certain tangible assets and rights to certain in-process technologies in exchange for $100,000 and 175,000 shares of common stock valued at $1,575,000 ($9.00 per share). The Company recorded the tangible assets at their fair value of approximately $50,000. As of the date these technologies were acquired, they had not achieved technological or commercial feasibility and there is no significant alternative future use should the Company's development efforts prove unsuccessful. Accordingly, the Company recorded an acquired in-process technology charge of $1,625,000 in March 2000 related to the purchase of these technologies. Four projects were acquired in the purchase of these technologies. Three projects are related to the development of instrumentation for oligonucleotide synthesis. These three projects differ in the size and capacity of the instrumentation. The first of these projects was approximately 50% complete at the time of acquisition and is expected to be completed in approximately nine months at a total cost of $0.8 million. The second of these projects was approximately 20% complete at the date of acquisition and is expected to be completed in approximately 21 months at a total cost of $1.5 million. The third of these projects was approximately 10% complete at the date of acquisition and is expected to be completed in approximately 21 months at a total cost of $1.2 million. Revenue from these projects, if successful, is expected subsequent to their respective completion dates. The fourth project is related to the development of instrumentation for peptide synthesis. This project was approximately 20% complete at the date of acquisition and has no projected completion date at this time. 8 SIGNATURES ---------- Pursuant to the requirements of the Securities Exchange Act of 1934, the Registrant has duly caused this report to be signed on its behalf by the undersigned thereunto duly authorized. Illumina , Inc. --------------------------------------- (Registrant) Date: September 13, 2000 /s/ Timothy Kish --------------------------------------- Timothy Kish Vice President of Finance 9 ILLUMINA, INC. Index of Exhibits ----------------- Exhibit No. - ----------- 27.1 Financial Data Schedule. 10