UNITED STATES SECURITIES AND EXCHANGE COMMISSION WASHINGTON, D.C. 20549 FORM 10-Q X QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 FOR THE QUARTERLY PERIOD ENDED MARCH 31, 1998. OR TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 FOR THE TRANSITION PERIOD FROM ___________ TO ___________. Commission File Number 0-22570 Lynx Therapeutics, Inc. (Exact name of registrant as specified in its charter) Delaware 94-3161073 (State or other jurisdiction of (I.R.S. Employer incorporation or organization) Identification No.) 3832 Bay Center Place Hayward, CA 94545 (Address of principal executive offices) (Zip Code) (510) 670-9300 (Registrant's telephone number, including area code) Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the Registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days. Yes X No The number of shares of Common Stock outstanding as of April 30, 1998, was 11,099,718. The aggregate market value of the common stock of the Registrant held by non-affiliates as of April 30, 1998 was $87,186,929. Page 1 of 13 Lynx Therapeutics, Inc. INDEX PART I FINANCIAL INFORMATION Page ---- Item 1. Condensed Consolidated Balance Sheets - March 31, 1998 and December 31, 1997........................................ 3 Condensed Consolidated Statements of Operations - three months ended March 31, 1998 and 1997............................... 4 Condensed Consolidated Statements of Cash Flows - three months ended March 31, 1998 and 1997................................ 5 Notes to Condensed Consolidated Financial Statements............. 6 Item 2. Management's Discussion and Analysis of Financial Condition and Results of Operations................ 8 PART II OTHER INFORMATION Item 1. Legal Proceedings................................................10 Item 2. Changes in Securities............................................10 Item 3. Defaults Upon Senior Securities..................................10 Item 4. Submission of Matters to a Vote of Security Holders..............10 Item 5. Other Information................................................10 Item 6. Exhibits and Reports on Form 8-K.................................10 Signatures .................................................................11 Page 2 of 13 PART I FINANCIAL INFORMATION Item 1. Financial Statements Lynx Therapeutics, Inc. CONDENSED CONSOLIDATED BALANCE SHEETS (In thousands) March 31, December 31, 1998 1997* ------------------------------- (Unaudited) Assets Current assets: Cash and cash equivalents $ 15,379 $ 8,798 Short-term investments 8,720 16,132 Accounts receivable 350 244 Other current assets 163 199 ------------------------------- Total current assets 24,612 25,373 Property and equipment: Leasehold improvements 3,803 3,795 Laboratory and other equipment 2,807 3,562 ------------------------------- 6,610 7,357 Less accumulated depreciation and amortization (2,709) (3,588) ------------------------------- Net property and equipment 3,901 3,769 Notes receivable from employees 49 125 Long-term investments 1,747 -- ------------------------------- $ 30,309 $ 29,267 =============================== Liabilities and stockholders' equity Current liabilities: Accounts payable $ 1,299 $ 210 Accrued compensation 177 289 Accrued professional fees 151 179 Deferred revenue from related parties 1,604 2,292 Other accrued liabilities 437 528 ------------------------------- Total current liabilities 3,668 3,498 Other noncurrent liabilities 187 179 Stockholders' equity: Preferred stock -- 27,189 Common stock 74,357 46,640 Notes receivable from stockholders (460) (460) Deferred compensation (5,064) (5,394) Accumulated other comprehensive income (loss) (31) (45) Accumulated deficit (42,348) (42,340) ------------------------------- Total stockholders' equity 26,454 25,590 =============================== $ 30,309 $ 29,267 =============================== <FN> * The Balance Sheet amounts at December 31, 1997 have been derived from audited financial statements at that date but do not include all of the information and footnotes required by generally accepted accounting principles for complete financial statements. See accompanying notes. </FN> Page 3 of 13 Lynx Therapeutics, Inc. CONDENSED CONSOLIDATED STATEMENTS OF OPERATIONS (In thousands, except per share amounts) (Unaudited) Three Months Ended March 31, -------------------- 1998 1997 ------- ------- Net revenues: Revenues from collaborative arrangements with $ 688 $ 1,063 related parties Other revenues 126 72 -------------------- Total revenues 814 1,135 Operating expenses: Research and development 3,842 3,075 General and administrative 492 425 -------------------- Total operating expenses 4,334 3,500 -------------------- Loss from operations (3,520) (2,365) Interest income 336 171 Gain on sale of Antisense Business 3,176 -- -------------------- Net loss $ (8) $(2,194) ==================== Basic and diluted net loss per share $ (0.00) $ (0.80) ==================== Shares used in per share computation 5,729 2,759 ==================== See accompanying notes. Page 4 of 13 Lynx Therapeutics, Inc. CONDENSED CONSOLIDATED STATEMENTS OF CASH FLOWS (In thousands) (Unaudited) Three Months Ended March 31, --------------------------- 1998 1997 -------- -------- Cash flows from operating activities Net loss $ (8) $ (2,194) Adjustments to reconcile net loss to net cash used in operating activities: Depreciation and amortization 355 300 Amortization of deferred compensation 330 180 Non-cash consideration received and costs incurred on the sale of the Antisense Business, net (417) -- Changes in operating assets and liabilities: Accounts receivable (106) 46 Other current assets 36 67 Accounts payable 1,089 74 Accrued liabilities (231) (191) Deferred revenue from related party (688) (1,063) Other noncurrent liabilities 8 8 --------------------------- Net cash provided by (used in) operating activities 368 (2,773) Cash flows from investing activities Purchases of short-term investments (5,667) -- Maturities of short-term investments 13,093 1,975 Purchases of long-term investments (865) -- Purchases of property and equipment (697) (865) Notes receivable from employees (9) (5) --------------------------- Net cash provided by investing activities 5,855 1,105 Cash flows from financing activities Issuance (repurchase) of common stock 358 (32) --------------------------- Net cash provided by (used in) financing activities 358 (32) --------------------------- Net increase (decrease) in cash and cash equivalents 6,581 (1,700) Cash and cash equivalents at beginning of period 8,798 12,109 --------------------------- Cash and cash equivalents at end of period $ 15,379 $ 10,409 =========================== <FN> See accompanying notes. </FN> Page 5 of 13 Lynx Therapeutics, Inc. NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS March 31, 1998 (Unaudited) 1. Ownership and Nature of Business Lynx Therapeutics, Inc. ("Lynx" or the "Company"), was incorporated in February 1992 under the laws of the State of Delaware. Lynx has spent the last several years developing unique, proprietary technologies designed to enable the simultaneous identification and analysis of all (or nearly all) the DNA molecules or fragments in a single biological sample. Utilizing its massively parallel solid phase cloning, massively parallel hybridization arrays, and massively parallel sequencing technologies, Lynx expects eventually to probe for genetic and genomic information in a much more efficient manner than current technologies. The proposed applications of Lynx's massively parallel technologies include gene discovery, gene expression, high resolution genome mapping and the identification of genetic variations. Lynx expects its technologies will be applicable to the genomes of man, pathogenic organisms, and commercially important plants and animals. Lynx believes that its technologies will open new avenues to understanding genetics and the relationships between gene function and the various states from health to disease. 2. Basis of Presentation The accompanying condensed consolidated financial statements included herein have been prepared by the Company without audit, pursuant to the rules and regulations promulgated by the Securities and Exchange Commission (the "Commission"). Certain prior year amounts have been reclassified to conform with current year presentation. Certain information and footnote disclosures normally included in financial statements prepared in accordance with generally accepted accounting principles have been omitted pursuant to Commission rules and regulations; nevertheless, the Company believes that the disclosures are adequate to make the information presented not misleading. In the opinion of management, the financial statements contain all adjustments, consisting only of normal recurring adjustments, necessary to present fairly the financial position, results of operations and cash flows of the Company for the interim periods presented. The results of operations for the quarter ended March 31, 1998, are not necessarily indicative of the results for the full year. The unaudited condensed consolidated financial statements include all accounts of the Company and its wholly owned subsidiary, Lynx GmbH, formed under the laws of the Federal Republic of Germany. All significant intercompany balances have been eliminated. These financial statements should be read in conjunction with the audited consolidated financial statements and notes thereto for the Company's year ended December 31, 1997, included in its annual report on Form 10-K filed with the Securities and Exchange Commission. 3. Summary of Significant Accounting Policies Net Loss Per Share In 1997, the Financial Accounting Standards Board ("FASB") issued Statement of Financial Accounting Standards No. 128 ("SFAS" 128), "Earnings Per Share" ("EPS"), effective for periods ending after December 15, 1997. SFAS 128 requires that companies present two measures of earnings per share, basic and diluted. Basic loss per share is calculated by dividing net income or loss applicable to common shareholders by the weighted average number of common shares outstanding, net of certain common shares outstanding which are subject to continued vesting and the Company's right of repurchase, while diluted EPS reflects the potential dilution of securities that could share in the earnings of the company, to the extent such securities are dilutive. Basic and diluted loss per share are equivalent for all periods presented herein due to the Company's net loss. The Company has adopted SFAS 128 for annual and interim financial statements issued after December 15, 1997, and has calculated and restated EPS in accordance with SFAS 128 for each period in which an income statement is reported. The following have been excluded from the calculation of loss per share because the effect of inclusion would be antidilutive: approximately 270,000 common shares which are outstanding but are subject to the Company's right of repurchase which expires ratably over 5 years, and options to purchase approximately 1,400,000 shares of common stock at a weighted average price of $4.67 per share. Additionally, all periods prior to March 31, 1998 Page 6 of 13 exclude approximately 500,000 shares of Series B, C, and D convertible preferred stock. On March 31, 1998, the preferred stock converted to common stock on a ten-for-one basis. The converted shares are, and will be, included in the calculations of basic EPS in all periods including, and subsequent to, March 31, 1998. (See Note 5) Comprehensive Income As of January 1, 1998, the Company adopted Statement of Financial Accounting Standards, No. 130 ("SFAS 130"), Comprehensive Income. SFAS 130 establishes new rules for the reporting and display of comprehensive income and its components. SFAS 130 requires unrealized gains or losses on the Company's available-for-sale securities, which prior to adoption were reported separately in shareholders' equity, to be included in other comprehensive income. Prior year financial statements have been reclassified to conform to the requirements of SFAS 130. During the first quarter of 1998 and 1997, total comprehensive loss amounted to $39,000 and $2.2 million, respectively. 4. Sale of the Antisense Business On March 10, 1998, Lynx sold its portfolio of phosphorothioate antisense patents and licenses, and its therapeutic oligonucleotide manufacturing facility (collectively, the "Antisense Business"), to Inex Pharmaceuticals Corporation ("Inex") a Canadian company. As partial consideration in this transaction, Lynx received $3 million in cash and will receive 1.2 million shares of Inex common stock, in three equal installments, with the first 400,000 shares received on the above date, and the second and third installments of stock to be received no later than two and three years, respectively, from the closing date of the transaction. The Inex common stock received by Lynx is subject to certain restrictions on trading for specific periods of time following receipt by Lynx. Lynx is also entitled to receive royalties on future sales of phosphorothioate antisense products. In addition, Lynx has agreed to a royalty-bearing license to Inex for its phosphoroamidate chemistry for certain therapeutic applications in the fields of cancer and inflammation that will be defined later. The gain on the sale of the Antisense Business is based on the cash and the first installment of the Inex common stock received on the transaction date, net of the book value of the assets transferred to Inex and certain other costs associated with the transaction and incurred by Lynx. The Inex common stock is classified in long term assets. 5. Conversion of Preferred Stock to Common Stock On March 31, 1998, pursuant to the Amended and Restated Certificate of Designation dated September 30, 1997, all of the shares of Series B, Series C, and Series D preferred stock were converted into common stock on a ten-for-one basis. The inclusion of these shares in both the basic and diluted earnings per share will have a significant impact on the earnings per share amounts in 1998 and subsequent years. The net loss per share for the quarter ending March 31, 1998, would have been $(0.00) if the Series B, Series C and Series D preferred stock were converted to common stock on January 1, 1998. 6. New Facility Lease On February 27, 1998, the Company entered into a noncancelable lease for additional facilities space. The term of the lease commences on December 15, 1998 and expires on December 14, 2008. Under the terms of the lease, the monthly rental payments are fixed for the first twenty-four months. Thereafter, the monthly rental payments increase, and are subject to annual Consumer Price Index-based adjustments, with minimum and maximum limits. The Company has the option to extend the lease for an additional five year period, subject to certain conditions, with payments to be determined at the time of the exercise of such option. Additionally, the Company has an option (the "Expansion Option"), exercisable on or prior to January 1, 2000, to lease additional building space for expansion purposes. In return for the Expansion Option, the Company may be subject to a nominal carrying cost on the additional space, depending on the timing of the exercise of such option, if ever. Page 7 of 13 Item 2. Management's Discussion and Analysis of Financial Condition and Results of Operations Except for the historical information contained herein, the following discussion contains forward-looking statements that involve risks and uncertainties. The Company's actual results could differ materially from those discussed here. Factors that could cause or contribute to such differences include, but are not limited to, those discussed in this section, as well as in the Company's annual report (Form 10-K) filed with the Securities and Exchange Commission for the fiscal year ended December 31, 1997. Overview Results of Operations Revenue Revenue was $0.8 million and $1.1 million for the quarters ended March 31, 1998 and 1997, respectively. Revenues for 1998 included $0.7 million earned under a collaborative agreement with BASF AG ("BASF"), and approximately $0.1 million in other revenue, primarily compound for use in clinical trials. The 1997 revenues included $0.7 million from BASF and $0.4 million from Hoechst AG and Hoechst Marion Roussel (collectively, "Hoechst") earned under collaborative agreements. Revenue will continue to fluctuate based on activity with current and potential corporate partners and achievement of milestones. Operating Expenses Research and development expenses were $3.8 million and $3.1 million in the quarters ended March 31, 1998 and 1997, respectively. The increase was due to the building of production capacity for the anticipated commercial application of the Company's novel, proprietary massively parallel technologies, and to higher amortization of deferred compensation related to the grant of stock options, partially offset by reduced funding to various laboratories under collaborative research agreements. Lynx expects to incur substantial and increasing research and development expenses due to planned spending for ongoing technology development and implementation, and new research applications. General and administrative expenses were $492,000 for the quarter ended March 31, 1998, compared to $425,000 for the quarter ended March 31, 1997. The increase was due to higher headcount-related expenses. Lynx expects to continue to incur substantial administrative expenses in support of its research and development efforts. Interest Income Interest income was $336,000 and $171,000 for the quarters ended March 31, 1998 and 1997 respectively. The increase was due to a higher average cash balance in the quarter ended March 31, 1998 than in the same quarter in 1997. Gain on Sale of Antisense Business Other income of $3.2 million for the quarter ended March 31, 1998 was comprised of the gain on the sale of Lynx's portfolio of phosphorothioate antisense patents and licenses, and its therapeutic oligonucleotide manufacturing facility (collectively, the "Antisense Business") to Inex Pharmaceuticals Corporation ("Inex"). As partial consideration in this transaction, Lynx received $3 million in cash and will receive 1.2 million shares of Inex common stock, in three equal installments, with the first 400,000 shares received on March 10, 1998, and the second and third installments of stock to be received no later than two and three years, respectively, from the closing date of the transaction. The Inex common stock received by Lynx is subject to certain restrictions on trading for specific periods of time following receipt by Lynx. The gain on the sale of the Antisense Business reflects on the cash and the first installment of the Inex common stock received on the transaction date, net of the book value of the assets transferred to Inex and certain other costs associated with the transaction and incurred by Lynx. Page 8 of 13 Liquidity and Capital Resources Net cash provided by operating activities of $367,000 for the quarter ended March 31, 1998, differed from the net loss for the same period in 1997, primarily due to increases in payables, the non-cash consideration received and costs incurred on the sale of the Antisense Business, current period recognition of a portion of previously deferred revenue, depreciation and amortization, and deferred compensation expense. Net cash provided by investing activities related to maturities of short-term investments partially offset by purchases of capital equipment. Net cash provided by financing activities related to the exercise of stock options by employees. Cash and equivalents were $15.4 million at March 31, 1998. Lynx plans to use available funds for the development and implementation of its massively parallel technologies and to build capacity for their early commercial uses. Pending such uses as described above, Lynx intends to invest its excess cash in short-term, investment grade, interest-bearing securities or certificates of deposit. Since commencing operations as an independent company, Lynx has obtained funding for its operations through sales of preferred and common stock to venture capital investors, institutional investors, and collaborative partners; revenue from collaborative research and development arrangements, interest income, product sales, and government grants. The cost, timing, and amount of funds required for specific uses by Lynx cannot be precisely determined at this time and will be based upon Lynx's progress in its research and development, administrative and legal costs, the establishment of corporate collaborations and other arrangements, and the availability of alternate methods of financing. Lynx expects to incur substantial and increasing research and development expenses and intends to seek additional financing, as needed, through contractual arrangements with corporate partners and equity or debt offerings. There can be no assurance that any additional financing required by Lynx will be available or, if available, will be on terms favorable to Lynx. The Company believes that, at current spending levels, its existing capital resources and interest income thereon will enable it to maintain its current and planned operations at least through mid-1999. Impact of Year 2000 The Company has completed an assessment of its computer operating systems and related software and, with only a few minor exceptions, has found them to be Year 2000 compliant. The Company's exposure is limited due to the fact that most of its computers and software were acquired within the past five years and were Year 2000 compliant at purchase. The Company plans to replace the operating systems on the few non-compliant computers before 2000 and expects that the cost will be immaterial. The Company believes that even if such modifications are not made, there will be no adverse impact on operations. However, Year 2000 problems may affect the computer systems of the Company's business partners, vendors, customers, and financial service organizations with which the Company interacts. The Company is in the process of developing a plan to determine the impact that third parties which are not Year 2000 compliant may have on the operations of the Company. There can be no assurance that such plan will be able to address fully, or at all, the "Year 2000 issue" which could have a material adverse effect upon the Company's business, financial condition and results of operations. Page 9 of 13 PART II OTHER INFORMATION Item 1. Legal Proceedings None Item 2. Changes in Securities None Item 3. Defaults upon Senior Securities None Item 4. Submission of Matters to a Vote of Security Holders None Item 5. Other Information None Item 6. Exhibits and Reports on Form 8-K. a) Exhibits - The following documents are filed as Exhibits to this report: Exhibit Number Description ------ ----------- 10.35* Lease, dated as of February 27, 1998, between the Company and SimFirst, L.P. limited partnership 27.1 Financial Data Schedule *Portions of this agreement have been deleted pursuant to our request for confidential treatment. b) The Company filed a Current Report on Form 8-K on March 24, 1998, reporting under Item 2 that the Company had sold its portfolio of phosphorothioate antisense patents and licenses, and its therapeutic oligonucleotide manufacturing facility, to Inex Pharmaceuticals Corporation of Vancouver, Canada. Page 10 of 13 SIGNATURES Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned, thereunto duly authorized. LYNX THERAPEUTICS, INC. /s/ Sam Eletr ------------------------------------ By: Sam Eletr, Ph.D. Chief Executive Officer and Chairman of the Board Date: May 13, 1998 /s/ Edward C. Albini ------------------------------------ By: Edward C. Albini Chief Financial Officer (Principal Financial and Accounting Officer) Date: May 13, 1998 Page 11 of 13