EXHIBIT 4.1 AMENDMENT AND WAIVER AGREEMENT THIS AMENDMENT AND WAIVER AGREEMENT, dated as of September 10, 2003, is executed by and among TOM BROWN, INC., a Delaware corporation (the "Company"), UNION OIL COMPANY OF CALIFORNIA, a California corporation ("Unocal"), and CHICAGO CARBON COMPANY, an Illinois general partnership ("CCC"). RECITALS A. The Company and Unocal entered into a Stock Ownership and Registration Rights Agreement dated as of June 29, 1999, which Agreement was supplemented by an Addendum dated as of September 30, 1999 by and among the Company, Unocal and CCC (collectively, the "Agreement"). B. Pursuant to Section 4.2(a) of the Agreement, in the event that the Company issues, sells or transfers shares of common stock of the Company (the "TBI Common Stock"), CCC (as Unocal's successor in interest) has the right to purchase additional shares from the Company to maintain its percentage ownership of TBI Common Stock at the level it was immediately prior to the time of each such issuance, sale or transfer. C. The Company has commenced and intends to consummate a public offering of shares of TBI Common Stock (the "Offering") pursuant to an underwritten offering led by JP Morgan and CCC will be a selling stockholder in such offering. AGREEMENTS NOW, THEREFORE, in consideration of the agreements set forth above, 1. Unocal and CCC hereby waive any and all rights they may have to acquire additional shares from the Company pursuant to the provisions set forth in Section 4.2(a) of the Agreement as a result of the issuance and sale of shares in the Offering or pursuant to any employee benefit plan of the Company. 2. The Agreement is hereby amended to add the following sentence to the end of Section 4.2(a): Notwithstanding anything contained herein, neither Unocal nor any of its affiliates shall have the right to acquire shares of TBI Common Stock from TBI as a result of any issuance, sale or transfer of shares of TBI Common Stock pursuant to any employee benefit plan of TBI. (3) Neither Unocal nor CCC waives any other rights or privileges under the Agreement and, except for the specific waiver and amendment made herein, the Agreement shall remain in full force and effect without modification. -1- IN WITNESS WHEREOF, the parties have caused this Waiver to be duly executed as of the date set forth above. TOM BROWN, INC. By: /s/ Daniel G. Blanchard ---------------------------------- Name: Daniel G. Blanchard Title: Executive Vice President and Chief Financial Offer UNION OIL COMPANY OF CALIFORNIA By: /s/ Douglas M. Miller ----------------------------------- Name: Douglas M. Miller Title: Vice President, Corporate Development CHICAGO CARBON COMPANY By: Midwest 76, Inc. By: /s/ Darrell D. Chessum ------------------------------------- Name: Darrell D. Chessum Title: Treasurer By: Lemont Carbon, Inc. By: /s/ Darrell D. Chessum -------------------------------------- Name: Darrell D. Chessum Title: Treasurer By: Midwest Natural Gas Pipeline Company By: /s/ Gary R. Miller -------------------------------- Name: Gary R. Miller ------------------------------- Title: Assistant Comptroller ------------------------------ Constituting all of the partners of the Chicago Carbon Company