================================================================================ UNITED STATES SECURITIES AND EXCHANGE COMMISSION WASHINGTON, D.C. 20549 FORM 10-Q (MARK ONE) |X| QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 FOR THE QUARTERLY PERIOD ENDED JUNE 30, 2003 OR | | TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 FOR THE TRANSITION PERIOD FROM _____________ TO _____________ COMMISSION FILE NUMBER: 000-30111 LEXICON GENETICS INCORPORATED (EXACT NAME OF REGISTRANT AS SPECIFIED IN ITS CHARTER) DELAWARE 76-0474169 (STATE OR OTHER JURISDICTION OF (I.R.S. EMPLOYER INCORPORATION OR ORGANIZATION) IDENTIFICATION NUMBER) 8800 TECHNOLOGY FOREST PLACE THE WOODLANDS, TEXAS 77381 (ADDRESS OF PRINCIPAL EXECUTIVE OFFICES AND ZIP CODE) (281) 863-3000 (REGISTRANT'S TELEPHONE NUMBER, INCLUDING AREA CODE) Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports) and (2) has been subject to such filing requirements for the past 90 days. Yes X No ------ ------ As of August 1, 2003, 62,538,748 shares of the registrant's common stock, par value $0.001 per share, were outstanding. ================================================================================ LEXICON GENETICS INCORPORATED TABLE OF CONTENTS <Table> <Caption> PAGE ---- FACTORS AFFECTING FORWARD-LOOKING STATEMENTS...................................................... 2 PART I - FINANCIAL INFORMATION Item 1. Financial Statements Consolidated Balance Sheets - June 30, 2003 (unaudited) and December 31, 2002............ 3 Consolidated Statements of Operations (unaudited) - Three and Six Months Ended June 30, 2003 and 2002.............................................................. 4 Consolidated Statements of Cash Flows (unaudited) - Six Months Ended June 30, 2003 and 2002.............................................................. 5 Notes to Consolidated Financial Statements (unaudited)................................... 6 Item 2. Management's Discussion and Analysis of Financial Condition and Results of Operations.................................................................... 9 Item 3. Quantitative and Qualitative Disclosures About Market Risk............................... 17 Item 4. Controls and Procedures.................................................................. 17 PART II - OTHER INFORMATION Item 4 Submission of Matters to a Vote of Security Holders...................................... 17 Item 6. Exhibits and Reports on Form 8-K......................................................... 18 SIGNATURES........................................................................................ 19 </Table> The Lexicon name and logo, LexVision(R) and OmniBank(R) are registered trademarks and Genome5000(TM) and e-Biology(TM) are trademarks of Lexicon Genetics Incorporated. ---------- FACTORS AFFECTING FORWARD LOOKING STATEMENTS This quarterly report on Form 10-Q contains forward-looking statements. These statements relate to future events or our future financial performance. We have attempted to identify forward-looking statements by terminology including "anticipate," "believe," "can," "continue," "could," "estimate," "expect," "intend," "may," "plan," "potential," "predict," "should" or "will" or the negative of these terms or other comparable terminology. These statements are only predictions and involve known and unknown risks, uncertainties and other factors, including the risks outlined under "Item 2. Management's Discussion and Analysis of Financial Condition and Results of Operations - Risk Factors," that may cause our or our industry's actual results, levels of activity, performance or achievements to be materially different from any future results, levels or activity, performance or achievements expressed or implied by these forward-looking statements. Although we believe that the expectations reflected in the forward-looking statements are reasonable, we cannot guarantee future results, levels of activity, performance or achievements. We are not under any duty to update any of the forward-looking statements after the date of this quarterly report on Form 10-Q to conform these statements to actual results, unless required by law. 2 PART I - FINANCIAL INFORMATION ITEM 1. FINANCIAL STATEMENTS LEXICON GENETICS INCORPORATED CONSOLIDATED BALANCE SHEETS (IN THOUSANDS, EXCEPT PAR VALUE) <Table> <Caption> AS OF JUNE 30, AS OF DECEMBER 31, 2003 2002 ------------------ ------------------ ASSETS (UNAUDITED) Current assets: Cash and cash equivalents ................................................... $ 33,895 $ 39,362 Restricted cash ............................................................. 57,157 29,487 Short-term investments, including restricted investments of $551 and $28,223, respectively ........................................... 4,584 54,247 Accounts receivable, net of allowance for doubtful accounts of $109 .................................................................. 9,062 5,143 Prepaid expenses and other current assets ................................... 4,643 4,893 ------------------ ------------------ Total current assets ..................................................... 109,341 133,132 Property and equipment, net of accumulated depreciation of $24,618 and $19,768, respectively ........................................ 34,401 37,362 Goodwill ........................................................................ 25,798 25,798 Intangible assets, net of amortization of $2,360 and $1,760, respectively ....... 3,640 4,240 Other assets .................................................................... 214 1,240 ------------------ ------------------ Total assets ............................................................. $ 173,394 $ 201,772 ================== ================== LIABILITIES AND STOCKHOLDERS' EQUITY Current liabilities: Accounts payable ............................................................ $ 4,078 $ 4,378 Accrued liabilities ......................................................... 7,211 4,161 Current portion of deferred revenue ......................................... 12,651 12,760 ------------------ ------------------ Total current liabilities ................................................ 23,940 21,299 Deferred revenue, net of current portion ........................................ 4,387 5,887 Long-term debt .................................................................. 4,000 4,000 Other long-term liabilities ..................................................... 745 684 ------------------ ------------------ Total liabilities ........................................................ 33,072 31,870 Commitments and contingencies Stockholders' equity: Preferred stock, $.01 par value; 5,000 shares authorized; no shares issued and outstanding ......................................... -- -- Common stock, $.001 par value; 120,000 shares authorized; 52,522 and 52,367 shares issued and outstanding .......................... 52 52 Additional paid-in capital .................................................. 330,767 330,701 Deferred stock compensation ................................................. (5,988) (11,106) Accumulated deficit ......................................................... (184,509) (149,745) ------------------ ------------------ Total stockholders' equity ............................................... 140,322 169,902 ------------------ ------------------ Total liabilities and stockholders' equity ............................... $ 173,394 $ 201,772 ================== ================== </Table> The accompanying notes are an integral part of these consolidated financial statements. 3 LEXICON GENETICS INCORPORATED CONSOLIDATED STATEMENTS OF OPERATIONS (IN THOUSANDS, EXCEPT PER SHARE AMOUNTS) (UNAUDITED) <Table> <Caption> THREE MONTHS ENDED SIX MONTHS ENDED JUNE 30, JUNE 30, ---------------------- ---------------------- 2003 2002 2003 2002 -------- -------- -------- -------- Revenues: Subscription and license fees ............................. $ 4,310 $ 4,975 $ 7,412 $ 8,370 Collaborative research .................................... 4,590 4,267 9,583 8,523 Compound libraries and other .............................. 21 169 32 174 -------- -------- -------- -------- Total revenues .......................................... 8,921 9,411 17,027 17,067 Operating expenses: Research and development, including stock-based compensation of $1,285, $1,267, $2,555 and $2,574, respectively ................. 20,794 19,032 40,628 35,896 General and administrative, including stock-based compensation of $1,276, $1,276, $2,552 and $2,558, respectively ................. 5,979 6,019 11,783 11,988 -------- -------- -------- -------- Total operating expenses .............................. 26,773 25,051 52,411 47,884 -------- -------- -------- -------- Loss from operations ......................................... (17,852) (15,640) (35,384) (30,817) Interest and other income .................................... 316 702 784 1,822 Interest expense ............................................. (83) (2) (164) (4) -------- -------- -------- -------- Net loss ..................................................... $(17,619) $(14,940) $(34,764) $(28,999) ======== ======== ======== ======== Net loss per common share, basic and diluted ................. $ (0.34) $ (0.29) $ (0.66) $ (0.56) Shares used in computing net loss per common share, basic and diluted ....................... 52,496 52,250 52,434 52,188 </Table> The accompanying notes are an integral part of these consolidated financial statements. 4 LEXICON GENETICS INCORPORATED CONSOLIDATED STATEMENTS OF CASH FLOWS (IN THOUSANDS) (UNAUDITED) <Table> <Caption> SIX MONTHS ENDED JUNE 30, -------------------------- 2003 2002 ---------- ---------- Cash flows from operating activities: Net loss .................................................................... $ (34,764) $ (28,999) Adjustments to reconcile net loss to net cash used in operating activities: Depreciation .............................................................. 5,049 4,166 Amortization of intangible assets, other than goodwill .................... 600 600 Amortization of deferred stock compensation ............................... 5,108 5,132 Loss on sale of long-term investments ..................................... -- 197 Changes in operating assets and liabilities: (Increase) decrease in accounts receivable .............................. (3,919) 501 (Increase) decrease in prepaid expenses and other current assets ........ 250 (710) Decrease in other assets ................................................ 1,025 2,820 Increase in accounts payable and other liabilities ...................... 2,811 768 Decrease in deferred revenue ............................................ (1,609) (3,678) ---------- ---------- Net cash used in operating activities ................................. (25,449) (19,203) Cash flows from investing activities: Purchases of property and equipment ......................................... (2,087) (13,030) Increase in restricted cash ................................................. (27,670) (27,346) Purchases of short-term investments ......................................... (15,386) (39,236) Maturities of short-term investments ........................................ 65,049 99,548 Sale of long-term investments ............................................... -- 4,803 ---------- ---------- Net cash provided by investing activities ............................... 19,906 24,739 Cash flows from financing activities: Proceeds from issuance of common stock ...................................... 76 406 ---------- ---------- Net cash provided by financing activities ............................... 76 406 ---------- ---------- Net increase (decrease) in cash and cash equivalents ........................... (5,467) 5,942 Cash and cash equivalents at beginning of period ............................... 39,362 16,355 ---------- ---------- Cash and cash equivalents at end of period ..................................... $ 33,895 $ 22,297 ========== ========== Supplemental disclosure of cash flow information: Cash paid for interest ...................................................... $ 3 $ 4 Supplemental disclosure of non-cash investing and financing activities: Unrealized gain on long-term investments .................................... $ -- $ 295 Cancellation of equity securities issued in connection with acquisition ..... $ -- $ (79) Reversal of deferred stock compensation in connection with stock options ............................................................. $ 10 $ 721 Deferred stock compensation in connection with issuance of restricted stock ....................................................... $ -- $ (99) Retirement of property and equipment ........................................ $ 199 $ -- </Table> The accompanying notes are an integral part of these consolidated financial statements. 5 LEXICON GENETICS INCORPORATED NOTES TO CONSOLIDATED FINANCIAL STATEMENTS (UNAUDITED) 1. BASIS OF PRESENTATION The accompanying unaudited consolidated financial statements of Lexicon Genetics Incorporated (Lexicon or the Company) have been prepared in accordance with generally accepted accounting principles for interim financial information and pursuant to the rules and regulations of the Securities and Exchange Commission (SEC). Accordingly, they do not include all of the information and footnotes required by generally accepted accounting principles for complete financial statements. In the opinion of management, all adjustments (consisting of normal recurring adjustments) considered necessary for a fair presentation have been included. Operating results for the six-month period ended June 30, 2003 are not necessarily indicative of the results that may be expected for the year ended December 31, 2003. The accompanying consolidated financial statements include the accounts of Lexicon and its subsidiary. Intercompany transactions and balances are eliminated in consolidation. For further information, refer to the financial statements and footnotes thereto included in Lexicon's annual report on Form 10-K for the year ended December 31, 2002, as filed with the SEC. 2. RECLASSIFICATION The accompanying statement of cash flows for the six months ended June 30, 2002, has been revised to reflect the reclassification of restricted cash from cash and cash equivalents into a separate line item. 3. RESTRICTED CASH AND INVESTMENTS Lexicon is required to maintain restricted cash or investments to collateralize borrowings made under the synthetic lease agreement under which it leases its office and laboratory facilities in The Woodlands, Texas, as well as to collateralize standby letters of credit for the leases on its office and laboratory facilities in East Windsor and Hopewell, New Jersey (see Note 7). As of June 30, 2003 and December 31, 2002, the Company maintained restricted cash and investments of $57.7 million under these agreements. 4. COMPREHENSIVE LOSS Comprehensive loss is comprised of net loss and unrealized gains and losses on long-term investments, which are considered available-for-sale securities. Comprehensive loss for the three-month and six-month periods ended June 30, 2002 was $14.3 million and $28.7 million, which includes a $0.6 million and $0.3 million unrealized gain on long-term investments. During 2002, Lexicon sold its available-for-sale securities. As a result there was no difference between net loss and comprehensive loss in the three-month and six-month periods ended June 30, 2003. 5. NET LOSS PER SHARE Net loss per share is computed using the weighted average number of shares of common stock outstanding during the applicable period. Shares associated with stock options and warrants are not 6 included because they are antidilutive. There are no differences between basic and diluted net loss per share for all periods presented. 6. STOCK-BASED COMPENSATION Lexicon's stock-based compensation plans are accounted for under the recognition and measurement provisions of Accounting Principles Board (APB) Opinion No. 25, "Accounting for Stock Issued to Employees, and Related Interpretations." Under the intrinsic value method described in APB Opinion No. 25, no compensation expense is recognized if the exercise price of the employee stock option equals the market price of the underlying stock on the date of grant. Lexicon recognized $2.6 million and $2.5 million of stock-based compensation during the three-month periods ended June 30, 2003 and 2002, respectively, and $5.1 million during each of the six-month periods ended June 30, 2003 and 2002, which was primarily related to option grants made prior to Lexicon's April 2000 initial public offering. The following table illustrates the effect on net loss and net loss per share if the fair value recognition provisions of Financial Accounting Standards Board (FASB) No. 123 "Accounting for Stock Based Compensation," had been applied to all outstanding and unvested awards in each period: <Table> <Caption> THREE MONTHS ENDED SIX MONTHS ENDED JUNE 30, JUNE 30, -------------------------- -------------------------- 2003 2002 2003 2002 ---------- ---------- ---------- ---------- Net loss, as reported ........................................... $ (17,619) $ (14,940) $ (34,764) $ (28,999) Add: Stock-based employee compensation expense included in reported net loss ........................ 2,561 2,543 5,107 5,132 Deduct: Total stock-based employee compensation expense determined under fair value based method for all awards ............................................... (6,603) (6,580) (13,046) (12,730) ---------- ---------- ---------- ---------- Pro forma net loss .............................................. $ (21,661) $ (18,977) $ (42,703) $ (36,597) ========== ========== ========== ========== Net loss per common share, basic and diluted As reported .................................................. $ (0.34) $ (0.29) $ (0.66) $ (0.56) ========== ========== ========== ========== Pro forma .................................................... $ (0.41) $ (0.36) $ (0.81) $ (0.70) ========== ========== ========== ========== </Table> 7. COMMITMENTS AND CONTINGENCIES In October 2000, Lexicon entered into a synthetic lease agreement under which the lessor purchased the Company's existing laboratory and office buildings and animal facility in The Woodlands, Texas and agreed to fund the construction of an additional laboratory and office building and a second animal facility. The synthetic lease agreement was subsequently expanded to include funding for the construction of a central plant facility for the distribution of utilities and related services among our facilities. Including the purchase price for the Company's existing facilities, the synthetic lease, as amended, provided for funding of up to $55.0 million in property and improvements. The term of the agreement is six years, which includes the construction period and a lease period and may be extended at our option for up to seven additional one-year terms. Alternatively, the lease may be terminated at an earlier date if we elect to (1) purchase the properties for a price equal to the $55.0 million funded under the synthetic lease for property and improvements plus the amount of any accrued but unpaid lease payments, (2) arrange for the sale of the properties to a third party or (3) surrender the properties to the lessor. If the Company elects to arrange for the sale of the properties or surrender the properties to the lessor, it has guaranteed approximately 86% of the total original cost as the residual fair value of the properties. Lease payments for the new facilities began upon completion of construction, which occurred at the end of the first quarter of 2002. Lease payments are subject to fluctuation based on LIBOR rates. Based on a LIBOR rate of 1.1% at June 30, 2003 the Company's total lease payments would be approximately $0.8 million per year. The Company is required to maintain restricted cash or investments to collateralize amounts funded under the synthetic lease agreement. In addition, Lexicon has agreed to maintain cash and investments of at least $12.0 million in excess of the Company's restricted cash and 7 investments. If the Company's cash and investments fall below that level, the Company may be required to seek a waiver of that agreement or to purchase the properties or arrange for their sale to a third party. Because the Company's cost to purchase the properties would not materially exceed the $55.0 million funded under the synthetic lease for property and improvements and would likely be less than the amount of restricted cash and investments it is required to maintain under the synthetic lease, the Company believes that any requirement that it do so would not have a material adverse effect on its financial condition. As of June 30, 2003 and December 31, 2002, the Company maintained restricted cash and investments of $57.2 million to collateralize funding for property and improvements under the synthetic lease of $55.0 million. Effective July 1, 2003, Lexicon will be required to consolidate the lessor under the synthetic lease, in accordance with FASB Interpretation No. 46 (FIN 46), "Consolidation of Variable Interest Entities." FIN 46 requires that unconsolidated variable interest entities be consolidated by their primary beneficiaries. A primary beneficiary is the party that absorbs a majority of the entity's expected losses or residual benefits. Accordingly, if the synthetic lease remains in place as of September 30, 2003, Lexicon's balance sheet as of such date will reflect as assets additional property and equipment approximating the $55.0 million funded under the synthetic lease for property and improvements, less accumulated depreciation, and a similar amount as a liability. The Company will also be required to depreciate such improvements over their useful lives. Whether or not the synthetic lease remains on Lexicon's balance sheet as of September 30, 2003, Lexicon's statements of operations for the third quarter of 2003 will reflect a charge of approximately $2.3 million for depreciation through June 30, 2003, as a cumulative effect of an accounting change. The Company intends to replace the synthetic lease agreement covering all of the facilities in The Woodlands, Texas, and is currently engaged in discussions to do so. The Company expects that any such new arrangement would require substantially lower amounts of restricted cash and investments while increasing lease payments with respect to these facilities, as compared to the synthetic lease agreement. Lexicon's subsidiary leases laboratory and office space in East Windsor and Hopewell, New Jersey. The East Windsor lease expires in January 2004. The Hopewell lease is a ten-year lease entered into in May 2002 for a 76,000 square-foot facility in New Jersey. Lexicon's subsidiary has exercised its option under the lease to obtain $2.0 million in funds from the landlord to be used for tenant improvements. The lease provides that the expiration of the term of the lease will be extended to June 30, 2013, the tenth anniversary of the date on which the landlord provides the tenant improvement funds, and that such funds will be amortized over a ten-year period. Accordingly, the escalating yearly base rent payment under the lease will be $1.3 million in the first year, $2.1 million in years two and three, $2.2 million in years four to six, $2.3 million in years seven to nine and $2.4 million in year ten. Lexicon is the guarantor of the obligations of its subsidiary under the lease. The Company is required to maintain restricted investments to collateralize the East Windsor and Hopewell leases. As of June 30, 2003, the Company had $0.5 million in restricted investments to collateralize standby letters of credit for these leases. 8. SUBSEQUENT EVENT In July 2003, Lexicon completed the public offering and sale of 10.0 million shares of its common stock at a price of $5.25 per share, for net proceeds of $49.0 million, after deducting underwriting discounts of $3.1 million and estimated offering expenses of $0.4 million. The underwriters have the option to purchase up to an additional 1.5 million shares of common stock from Lexicon to cover over-allotments, if any. Lexicon currently intends to use the net proceeds for research and development, but may use a portion of the net proceeds to acquire or invest in complementary products and technologies or for general corporate purposes. 8 ITEM 2. MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS OVERVIEW We are a biopharmaceutical company focused on the discovery of breakthrough treatments for human disease. We use proprietary gene knockout technology to systematically discover the physiological functions of genes in mice and to identify which corresponding human genes encode potential targets for therapeutic intervention, or drug targets. The study of mice can be a very powerful tool for understanding human genetics because of the close similarity of gene function and physiology in mice and humans. Approximately 99% of all human genes have a counterpart in the mouse genome. Our patented gene trapping and gene targeting technologies enable us to rapidly generate these knockout mice by altering the DNA of genes in a special variety of mouse cells, called embryonic stem cells, which can be cloned and used to generate mice with the altered gene. We then employ an integrated platform of advanced medical technologies to systematically discover and validate, in vivo, the physiological functions and pharmaceutical utility of the genes we have knocked out and the drug targets they encode. We are working both independently and with our drug discovery collaborators to discover potential small molecule drugs, therapeutic antibodies and therapeutic proteins for those in vivo-validated drug targets that we consider to have high pharmaceutical value. We are working with Genentech, Inc. to discover the functions of secreted proteins and potential antibody targets identified through Genentech's internal drug discovery research. We are working with Abgenix, Inc. to discover and develop therapeutic antibodies for in vivo-validated drug targets identified in our own research. We are also working with Incyte Corporation to discover and develop therapeutic proteins. In addition, we have established collaborations and license agreements with many other leading pharmaceutical and biotechnology companies under which we receive fees and, in many cases, are eligible to receive milestone and royalty payments, in return for granting access to some of our technologies and discoveries for use in such companies' own drug discovery efforts. We derive substantially all of our revenues from drug discovery alliances, subscriptions to our databases, target validation collaborations for the development and, in some cases, analysis of the physiological effects of genes altered in knockout mice, and technology licenses. To date, we have generated a substantial portion of our revenues from a limited number of sources and have not generated any revenue from sales of pharmaceuticals. Our operating results and, in particular, our ability to generate additional revenues are dependent on many factors, including: o our ability to establish new research collaborations, database subscriptions and technology licenses, and the timing of such arrangements; o the expiration or other termination of research collaborations with our collaborators and database subscriptions, which may not be renewed or replaced; o the success rate of our discovery efforts leading to opportunities for new research collaborations and licenses, as well as milestone payments and royalties; o the timing and willingness of collaborators to commercialize pharmaceutical products that would result in milestone payments and royalties; and 9 o general and industry-specific economic conditions which may affect our and our collaborators' research and development expenditures. Our future revenues from database subscriptions, collaborations and alliances are uncertain because our existing agreements have fixed terms or relate to specific projects of limited duration. Our future revenues from technology licenses are uncertain because they depend, in part, on securing new agreements. Our ability to secure future revenue-generating agreements will depend upon our ability to address the needs of our potential future subscribers, collaborators and licensees, and to negotiate agreements that we believe are in our long-term best interests. We may determine that our interests are better served by retaining rights to our discoveries and advancing our therapeutic programs to a later stage, which could limit our near-term revenues. Because of these and other factors, our quarterly operating results have fluctuated in the past and are likely to do so in the future, and we do not believe that quarter-to-quarter comparisons of our operating results are a good indication of our future performance. Since our inception, we have incurred significant losses and, as of June 30, 2003, we had an accumulated deficit of $184.5 million. Our losses have resulted principally from costs incurred in research and development, general and administrative costs associated with our operations, and non-cash stock-based compensation expenses associated with stock options granted to employees and consultants prior to our April 2000 initial public offering. Research and development expenses consist primarily of salaries and related personnel costs, material costs, facility costs, depreciation on property and equipment, legal expenses resulting from intellectual property prosecution and other expenses related to our drug discovery and LexVision programs, the development and analysis of knockout mice and our other target validation research efforts, and the development of compound libraries. General and administrative expenses consist primarily of salaries and related expenses for executive, finance and other administrative personnel, professional fees and other corporate expenses including business development, information technology and general legal activities. In connection with the expansion of our drug discovery programs and our target validation research efforts, we expect to incur increasing research and development and general and administrative costs. As a result, we will need to generate significantly higher revenues to achieve profitability. CRITICAL ACCOUNTING POLICIES Revenue Recognition We recognize revenues when persuasive evidence of an arrangement exists, delivery has occurred or services have been rendered, the price is fixed and determinable, and collectability is reasonably assured. Payments received in advance under these arrangements are recorded as deferred revenue until earned. Fees for access to our databases and other functional genomics resources are recognized ratably over the subscription or access period. Collaborative research payments are recognized as revenue as we perform our obligations related to such research to the extent such fees are non-refundable. Milestone-based fees are recognized upon completion of specified milestones according to contract terms. Non-refundable technology license fees are recognized as revenue upon the grant of the license to third parties, when performance is complete and there is no continuing involvement. Revenues recognized from multiple element contracts are allocated to each element of the arrangement based on the relative fair value of the elements. The determination of fair value of each element is based on objective evidence. When revenues for an element are specifically tied to a separate earnings process, revenue is recognized when the specific performance obligation associated with the 10 element is completed. When revenues for an element are not specifically tied to a separate earnings process, they are recognized ratably over the term of the agreement. A change in our revenue recognition policy or changes in the terms of contracts under which we recognize revenues could have an impact on the amount and timing of our recognition of revenues. Research and Development Expenses Research and development expenses consist of costs incurred for company-sponsored as well as collaborative research and development activities. These costs include direct and research-related overhead expenses and are expensed as incurred. Patent costs and technology license fees for technologies that are utilized in research and development and have no alternative future use are expensed when incurred. Stock-Based Compensation Deferred stock-based compensation and related amortization represents the difference between the exercise price of stock options granted and the fair value of our common stock at the applicable date of grant. Stock-based compensation is amortized as research and development expense or general and administrative expense, as appropriate, over the vesting period of the individual stock options for which it was recorded, generally four years. If employees and consultants continue to vest in accordance with their individual stock options, we expect to record amortization expense for deferred stock-based compensation as follows: $5.1 million during the remaining six months of 2003 and $0.9 million during 2004. The amount of stock-based compensation expense to be recorded in future periods may decrease if unvested stock options for which deferred stock-based compensation has been recorded are subsequently canceled or forfeited or may increase if additional stock options are granted to individuals other than employees or directors. Goodwill Impairment Goodwill is not amortized, but is tested at least annually for impairment at the reporting unit level. Impairment is the condition that exists when the carrying amount of goodwill exceeds its implied fair value. The first step in the impairment process is to determine the fair value of the reporting unit and then compare it to the carrying value, including goodwill. If the fair value exceeds the carrying value, no further action is required and no impairment loss is recognized. Additional impairment assessments may be performed on an interim basis if we encounter events or changes in circumstances that would indicate that, more likely than not, the carrying value of goodwill has been impaired. RECENT ACCOUNTING PRONOUNCEMENTS In December 2002, the Financial Accounting Standards Board, or FASB, issued Statement of Financial Accounting Standards, or SFAS, No. 148, "Accounting for Stock-Based Compensation - Transition and Disclosure." This statement amends SFAS 123, "Accounting for Stock-Based Compensation," to provide alternative methods of transition for a voluntary change to the fair value based method of accounting for stock-based employee compensation. In addition, this statement amends the disclosure requirements of SFAS 123 to require prominent disclosures in both annual and interim financial statements about the method of accounting for stock-based accounting for employee compensation and the effect of the method used on reported results. The Company is currently evaluating whether to adopt the fair value based method. In January 2003, the FASB issued Interpretation, or FIN, No. 46, "Consolidation of Variable Interest Entities." FIN 46 requires that unconsolidated variable interest entities be consolidated by their 11 primary beneficiaries. A primary beneficiary is the party that absorbs a majority of the entity's expected losses or residual benefits. FIN 46 applies immediately to variable interest entities created after January 31, 2003 and to existing variable interest entities in the periods beginning after June 15, 2003. In October 2000, we entered into a synthetic lease agreement under which the lessor purchased our existing laboratory and office buildings and animal facility in The Woodlands, Texas and agreed to fund the construction of an additional laboratory and office building and a second animal facility. The synthetic lease agreement was subsequently expanded to include funding for the construction of a central plant facility for the distribution of utilities and related services among our facilities. As adopted on July 1, 2003, FIN 46 will require us to consolidate the lessor under our synthetic lease. Accordingly, if the synthetic lease remains in place as of September 30, 2003, our balance sheet as of such date will reflect as assets additional property and equipment approximating the $55.0 million funded under the synthetic lease for property and improvements, less accumulated depreciation, and a similar amount as a liability. We would be required to depreciate such improvements over their useful lives. Whether or not the synthetic lease remains on Lexicon's balance sheet as of September 30, 2003, our statement of operations for the third quarter of 2003 will reflect a charge of approximately $2.3 million for depreciation through June 30, 2003, as a cumulative effect of an accounting change. We are currently seeking to replace the synthetic lease. See "- Liquidity and Capital Resources." RESULTS OF OPERATIONS Three Months Ended June 30, 2003 and 2002 Revenues. Total revenues decreased 5% to $8.9 million in the three months ended June 30, 2003 from $9.4 million in the corresponding period in 2002. The decrease of $0.5 million was primarily the result of higher revenues in the 2002 period from technology license agreements. Research and Development Expenses. Research and development expenses increased 9% to $20.8 million in the three months ended June 30, 2003 from $19.0 million in the corresponding period in 2002. The increase of $1.8 million was primarily attributable to increased personnel costs and facilities costs to support the expansion of our drug discovery programs, the development and analysis of knockout mice and our other functional genomics research efforts. Research and development expenses for both periods included $1.3 million of stock-based compensation. General and Administrative Expenses. General and administrative expenses were $6.0 million both in the three months ended June 30, 2003 and in the corresponding period in 2002. General and administrative expenses for both periods included $1.3 million of stock-based compensation. Interest and Other Income. Interest and other income decreased to $0.3 million in the three months ended June 30, 2003 from $0.7 million in the corresponding period in 2002. The decrease resulted from lower average cash and investment balances and lower average interest rates during the 2003 period. Net Loss and Net Loss Per Common Share. Net loss increased to $17.6 million in the three months ended June 30, 2003 from $14.9 million in the corresponding period in 2002. Net loss per common share increased to $0.34 in the three months ended June 30, 2003 from $0.29 in the corresponding period of 2002. As a complement to reporting net loss and net loss per common share in accordance with generally accepted accounting principles, or GAAP, Lexicon provides net loss and net loss per common share excluding non-cash, stock-based compensation. Lexicon uses these measures in establishing budgets and believes they are useful in measuring the performance of the Company's business. Excluding stock-based compensation expense of $2.6 million and $2.5 million in the three months ended June 30, 2003 and 2002, respectively, we would have had a net loss of $15.1 million and net loss per common share of $0.29 in the three months ended June 30, 2003, as compared to a net loss of $12.4 million and net loss per common share of $0.24 in the corresponding period in 2002. 12 Our quarterly operating results have fluctuated in the past and are likely to do so in the future, and we believe that quarter-to-quarter comparisons of our operating results are not a good indication of our future performance. Six Months Ended June 30, 2003 and 2002 Revenues. Total revenues were $17.0 million in the six months ended June 30, 2003, effectively unchanged from $17.1 million in the corresponding period of 2002. Research and Development Expenses. Research and development expenses increased 13% to $40.6 million in the six months ended June 30, 2003 from $35.9 million in the corresponding period in 2002. The increase of $4.7 million was primarily attributable to increased personnel costs and depreciation and amortization to support the expansion of our drug discovery programs, the development and analysis of knockout mice and our other functional genomics research efforts. Research and development expenses for both periods included $2.6 million of stock-based compensation. General and Administrative Expenses. General and administrative expenses, including stock-based compensation expense, decreased 2% to $11.8 million in the six months ended June 30, 2003 from $12.0 million in the corresponding period in 2002. General and administrative expenses for both periods included $2.6 million of stock-based compensation. Interest and Other Income. Interest and other income decreased to $0.8 million in the six months ended June 30, 2003 from $1.8 million in the corresponding period in 2002. The decrease resulted from lower average cash and investment balances and lower average interest rates during the 2003 period. Net Loss and Net Loss Per Common Share. Net loss increased to $34.8 million in the six months ended June 30, 2003 from $29.0 million in the corresponding period in 2002. Net loss per common share increased to $0.66 in the six months ended June 30, 2003 from $0.56 in the corresponding period of 2002. Excluding stock-based compensation expense of $5.1 million in both periods, the net loss was $29.7 million and net loss per common share was $0.57 in the six months ended June 30, 2003, as compared to a net loss of $23.9 million and net loss per common share of $0.46 in the corresponding period in 2002. LIQUIDITY AND CAPITAL RESOURCES We have financed our operations from inception primarily through sales of common and preferred stock, contract and milestone payments to us under our database subscription, collaboration and license agreements, equipment financing arrangements and leasing arrangements. From our inception through June 30, 2003, we had received net proceeds of $242.8 million from issuances of common and preferred stock, including $203.2 million of net proceeds from the initial public offering of our common stock in April 2000. In addition, from our inception through June 30, 2003, we received $113.2 million in cash payments from database subscription and technology license fees, drug discovery alliances, functional genomics collaborations, sales of compound libraries and reagents, and government grants, of which $105.5 million had been recognized as revenues through June 30, 2003. In July 2003, we completed a public offering of our common stock from which we received $49.0 million in net proceeds. As of June 30, 2003, we had $95.6 million in cash, cash equivalents and short-term investments, including restricted cash and investments, as compared to $123.1 million as of December 31, 2002. Restricted cash and investments were $57.7 million at both such dates. We used cash of $25.4 million in operations in the six months ended June 30, 2003. This consisted primarily of the net loss for the period of $34.8 million offset by non-cash charges of $5.1 million related to stock-based compensation expense, $5.0 million related to depreciation expense and $0.6 million related to amortization of intangible assets 13 other than goodwill. Investing activities provided cash of $19.9 million in the six months ended June 30, 2003, principally as a result of net maturities of short-term investments, offset in part by an increase in restricted cash. In October 2000, we entered into a synthetic lease agreement under which the lessor purchased our existing laboratory and office buildings and animal facility in The Woodlands, Texas and agreed to fund the construction of an additional laboratory and office building and a second animal facility. The synthetic lease agreement was subsequently expanded to include funding for the construction of a central plant facility for the distribution of utilities and related services among our facilities. Including the purchase price for our existing facilities, the synthetic lease, as amended, provided for funding of up to $55.0 million in property and improvements. The term of the agreement is six years, which includes the construction period and a lease period and may be extended at our option for up to seven additional one-year terms. Alternatively, the lease may be terminated at an earlier date if we elect to (1) purchase the properties for a price equal to the $55.0 million funded under the synthetic lease for property and improvements plus the amount of any accrued but unpaid lease payments, (2) arrange for the sale of the properties to a third party or (3) surrender the properties to the lessor. If we elect to arrange for the sale of the properties or surrender the properties to the lessor, we have guaranteed approximately 86% of the total original cost as the residual fair value of the properties. Lease payments for the new facilities began upon completion of construction, which occurred at the end of the first quarter of 2002. Lease payments are subject to fluctuation based on LIBOR rates. Based on a LIBOR rate of 1.1% at June 30, 2003, our total lease payments would be approximately $0.8 million per year. We are required to maintain restricted cash or investments to collateralize amounts funded under the synthetic lease agreement. In addition, we have agreed to maintain cash and investments of at least $12.0 million in excess of our restricted cash and investments. If our cash and investments fall below that level, we may be required to seek a waiver of that agreement or to purchase the properties or arrange for their sale to a third party. Because our cost to purchase the properties would not materially exceed the $55.0 million funded under the synthetic lease for property and improvements and would likely be less than the amount of restricted cash and investments we are required to maintain under the synthetic lease, we believe that any requirement that we do so would not have a material adverse effect on our financial condition. As of June 30, 2003 and December 31, 2002, we maintained restricted cash and investments of $57.2 million to collateralize funding for property and improvements under the synthetic lease of $55.0 million. We intend to replace our synthetic lease agreement covering all of our facilities in The Woodlands, Texas, and we are currently engaged in discussions to do so. We expect that any such new arrangement would require us to maintain substantially lower amounts of restricted cash and investments while increasing our lease payments with respect to these facilities, as compared to our synthetic lease agreement. In May 2002, our subsidiary Lexicon Pharmaceuticals (New Jersey), Inc. signed a ten-year lease for a 76,000 square-foot facility in Hopewell, New Jersey. Our subsidiary has exercised its option under the lease to obtain $2.0 million in funds from the landlord to be used for tenant improvements. The lease provides that the expiration of the term of the lease will be extended to June 30, 2013, the tenth anniversary of the date on which the landlord provides the tenant improvement funds, and that such funds will be amortized over a ten-year period. Accordingly, the escalating yearly base rent payment under the lease will be $1.3 million in the first year, $2.1 million in years two and three, $2.2 million in years four to six, $2.3 million in years seven to nine and $2.4 million in year ten. We are the guarantor of the obligations of our subsidiary under the lease. In December 2002, we borrowed $4.0 million under a convertible promissory note we issued to Genentech. The proceeds of the loan are to be used to fund research efforts under our alliance with Genentech for the discovery of therapeutic proteins and antibody targets. The note matures on or before December 31, 2005, but we may prepay it at any time. We may repay the note, at our option, in cash or in 14 shares of our common stock valued at the then-current market value, or in a combination of cash and shares, subject to certain limitations. The note accrues interest at an annual rate of 8%, compounded quarterly. Our future capital requirements will be substantial and will depend on many factors, including our ability to obtain alliance, collaboration, technology license and database subscription agreements, the amount and timing of payments under such agreements, the level and timing of our research and development expenditures, market acceptance of our products that we may develop and the resources we devote to developing and supporting such products. Our capital requirements will also be affected by any expenditures we make in connection with license agreements and acquisitions of and investments in complementary products and technologies. We expect to devote substantial capital resources to continue our research and development efforts, to expand our support and product development activities, and for other general corporate activities. We believe that our current unrestricted cash and investment balances, including the $49.0 million in net proceeds from our July 2003 public offering, and revenues we expect to derive from drug discovery alliances, subscriptions to our databases, target validation collaborations and technology licenses will be sufficient to fund our operations at least through the next 24 months. During or after this period, if cash generated by operations is insufficient to satisfy our liquidity requirements, we will need to sell additional equity or debt securities, or obtain additional credit arrangements. Additional financing may not be available on terms acceptable to us or at all. The sale of additional equity or convertible debt securities may result in additional dilution to our stockholders, and in the case of debt securities, could subject us to restrictive covenants. DISCLOSURE ABOUT MARKET RISK We are exposed to limited market and credit risk on our cash equivalents, which have maturities of three months or less. We maintain a short-term investment portfolio which consists of U.S. government agency debt obligations, investment grade commercial paper, corporate debt securities and certificates of deposit that mature three to 12 months from the time of purchase, which we believe are subject to limited market and credit risk. We currently do not hedge interest rate exposure or hold any derivative financial instruments in our investment portfolio. We have operated primarily in the United States and substantially all sales to date have been made in U.S. dollars. Accordingly, we have not had any material exposure to foreign currency rate fluctuations. RISK FACTORS Our business is subject to certain risks and uncertainties, including those referenced below: Risks Related to Our Company and Business o we have a history of net losses, and we expect to continue to incur net losses and may not achieve or maintain profitability o we will need additional capital in the future and, if it is not available, we will have to curtail or cease operations o we are an early-stage company, and we have not successfully developed or commercialized any therapeutics or drug targets that we have identified o we face substantial competition in the discovery of the DNA sequences of genes and their functions and in our drug discovery and product development efforts 15 o we rely heavily on our collaborators to develop and commercialize pharmaceutical products based on genes that we identify as promising candidates for development as drug targets o we rely on several key collaborators for a significant portion of our revenues o cancellations by or conflicts with our collaborators could harm our business o we have no experience in developing and commercializing pharmaceutical products on our own o we lack the capability to manufacture compounds for preclinical studies, clinical trials or commercial sales and will rely on third parties to manufacture our potential products o we may engage in future acquisitions, which may be expensive and time consuming and from which we may not realize anticipated benefits o if we lose our key personnel or are unable to attract and retain additional personnel, we may be unable to pursue collaborations or develop our own products o because all of our target validation operations are located at a single facility, the occurrence of a disaster could significantly disrupt our business o our quarterly operating results have been and likely will continue to fluctuate, and we believe that quarter-to-quarter comparisons of our operating results are not a good indication of our future performance Risks Related to Our Industry o our ability to patent our inventions is uncertain because patent laws and their interpretation are highly uncertain and subject to change o our patent applications may not result in patent rights o if other companies and institutions obtain patents relating to our drug target or product candidate discoveries, we may be unable to obtain patents for our inventions based upon those discoveries and may be blocked from using or developing some of our technologies and products o issued or pending patents may not fully protect our discoveries, and our competitors may be able to commercialize technologies or products similar to those covered by our issued or pending patents o we may be involved in patent litigation and other disputes regarding intellectual property rights and may require licenses from third parties for our discovery and development and planned commercialization activities. We may not prevail in any such litigation or other dispute or be able to obtain required licenses. o we use intellectual property that we license from third parties. If we do not comply with these licenses, we could lose our rights under them o we have not sought patent protection outside of the United States for some of our inventions, and some of our licensed patents only provide coverage in the United States o we may be unable to protect our trade secrets o our efforts to discover, evaluate and validate potential targets for therapeutic intervention and our drug discovery programs are subject to evolving data and other risks inherent in the drug discovery process 16 o we are subject to extensive and uncertain government regulatory requirements, which could adversely affect our ability to obtain, in a timely manner or at all, government approval of products based on genes that we identify, or to commercialize such products o if we obtain regulatory approval for our potential products, we will remain subject to extensive and rigorous ongoing regulation o the uncertainty of pharmaceutical pricing and reimbursement may decrease the commercial potential of any products that we or our collaborators may develop and affect our ability to raise capital o we use hazardous chemicals and radioactive and biological materials in our business; any disputes relating to improper handling, storage or disposal of these materials could be time consuming and costly o we may be sued for product liability o public perception of ethical and social issues may limit or discourage the use of our technologies, which could reduce our revenues For additional discussion of the risks and uncertainties that affect our business, see "Item 1. Business - Risk Factors" included in our annual report on Form 10-K for the year ended December 31, 2002 and the section captioned "Risk Factors" included in our Registration Statement on Form S-3 (Registration No. 333-101549), as supplemented by the Prospectus Supplement dated July 23, 2003, each as filed with the Securities and Exchange Commission. ITEM 3. QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISK See "Disclosure about Market Risk" under "Item 2. Management's Discussion and Analysis of Financial Condition and Results of Operations for quantitative and qualitative disclosures about market risk. ITEM 4. CONTROLS AND PROCEDURES Lexicon's chief executive officer and chief financial officer have concluded that the Company's disclosure controls and procedures (as defined in Securities Exchange Act of 1934 (the "Exchange Act") Rules 13a-14 (c) and 15d-14(c)) are sufficiently effective to ensure that the information required to be disclosed by the Company in the reports it files under the Exchange Act is gathered, analyzed and disclosed with adequate timeliness, accuracy and completeness, based on an evaluation of such controls and procedures conducted within 90 days prior to the date hereof. Subsequent to the Company's evaluation, there were no significant changes in internal controls or other factors that could significantly affect internal controls, including any corrective actions with regard to significant deficiencies and material weaknesses. PART II OTHER INFORMATION ITEM 4. SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS Our annual meeting of stockholders was held on April 30, 2003 to consider and vote upon the following proposals: 17 (1) The following individuals were nominated and elected as Class III directors, with the following numbers of shares voted for and withheld for such directors: <Table> <Caption> NAME OF DIRECTOR FOR WITHHELD ---------------------------- ---------- --------- Arthur T. Sands, M.D., Ph.D. 45,198,111 3,042,322 C. Thomas Caskey, M.D. 45,963,898 2,276,535 William A. McMinn 48,014,622 225,811 </Table> (2) The following additional matter was considered and approved, with the following numbers of shares voted for, voted against and abstaining with respect to such matter: <Table> <Caption> MATTER FOR AGAINST ABSTAIN - ----------------------------------------------- ---------- ------- ------- Appointment of Ernst & Young LLP as our independent auditors for the fiscal year ending 47,990,848 221,888 27,697 December 31, 2003 </Table> ITEM 6. EXHIBITS AND REPORTS ON FORM 8-K (a) Exhibits <Table> <Caption> EXHIBIT NO. DESCRIPTION - ----------- ------------------------------------------------------------ 31.1 -- Certification of CEO Pursuant to Section 302 of the Sarbanes-Oxley Act of 2002 31.2 -- Certification of CFO Pursuant to Section 302 of the Sarbanes-Oxley Act of 2002 32.1 -- Certification of CEO and CFO Pursuant to Section 906 of the Sarbanes-Oxley Act of 2002 </Table> (b) Reports on Form 8-K: On May 1, 2003, we filed a Current Report on Form 8-K dated May 1, 2003 relating to our issuance of a press release reporting our financial results for the quarter ended March 31, 2003. 18 SIGNATURES Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned thereunto duly authorized. LEXICON GENETICS INCORPORATED Date: August 6, 2003 By: /s/ ARTHUR T. SANDS ------------------------------------------ Arthur T. Sands, M.D., Ph.D. President and Chief Executive Officer Date: August 6, 2003 By: /s/ JULIA P. GREGORY ------------------------------------------ Julia P. Gregory Executive Vice President and Chief Financial Officer 19 INDEX TO EXHIBITS <Table> <Caption> EXHIBIT NO. DESCRIPTION ----------- ----------------------------------------------------------- 31.1 -- Certification of CEO Pursuant to Section 302 of the Sarbanes-Oxley Act of 2002 31.2 -- Certification of CFO Pursuant to Section 302 of the Sarbanes-Oxley Act of 2002 32.1 -- Certification of CEO and CFO Pursuant to Section 906 of the Sarbanes-Oxley Act of 2002 </Table>