EXHIBIT 3.3 DELAWARE PAGE 1 THE FIRST STATE I, HARRIET SMITH WINDSOR, SECRETARY OF STATE OF THE STATE OF DELAWARE, DO HEREBY CERTIFY THE ATTACHED IS A TRUE AND CORRECT COPY OF THE CERTIFICATE OF AMENDMENT OF "HEP OPERATING COMPANY, L.P.", CHANGING ITS NAME FROM "HEP OPERATING COMPANY, L.P." TO "HOLLY ENERGY PARTNERS - OPERATING, L.P.", FILED IN THIS OFFICE ON THE THIRTIETH DAY OF JULY, A.D. 2004, AT 11:21 O'CLOCK A.M. /s/ HARRIET SMITH WINDSOR ------------------------- [SEAL] Harriet Smith Windsor, Secretary of State 3743527 8100 AUTHENTICATION: 3266907 040559252 DATE: 07-30-04 CERTIFICATE OF AMENDMENT TO THE CERTIFICATE OF LIMITED PARTNERSHIP OF HEP OPERATING COMPANY, L.P. The undersigned, desiring to amend the Certificate of Limited Partnership of HEP Operating Company, L.P., pursuant to the provisions of Section 17-202 of the Revised Uniform Limited Partnership Act of the State of Delaware, does hereby certify as follows: 1. The name of the limited partnership is HEP Operating Company, L.P. 2. Article 1 of the Certificate of Limited Partnership shall be amended as follows: The name of the Limited Partnership is Holly Energy Partners - Operating, L.P. IN WITNESS WHEREOF, the undersigned has executed this Certificate of Amendment to the Certificate of Limited Partnership on the 30th day of July, 2004. GENERAL PARTNER: HEP LOGISTICS G.P., L.L.C. By /s/ Stephen J. McDonnell -------------------------------------- Stephen J. McDonnell, Vice President and Chief Financial Officer State of Delaware Secretary of State Division of Corporations HEP Operating Certificate of Amendment Delivered 11:37 AM 07/30/2004 to Certificate of Limited Partnership FILED 11:21 AM 07/30/2004 SRV 040559252 - 3743527 FILE