1 SECURITIES AND EXCHANGE COMMISSION WASHINGTON, D.C. 20549 ------------ FORM 10-Q QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES AND EXCHANGE ACT OF 1934 For Quarter Ended: FEBRUARY 28, 1998 Commission File No: 0-10824 GENOME THERAPEUTICS CORP. ------------------------------------------------------ (EXACT NAME OF REGISTRANT AS SPECIFIED IN ITS CHARTER) MASSACHUSETTS 04-2297484 - ------------------------------ ------------------------------- (STATE OR OTHER JURISDICTION OF (I.R.S. EMPLOYER IDENTIFICATION INCORPORATION OR ORGANIZATION) NO.) 100 BEAVER STREET; WALTHAM, MASSACHUSETTS 02154 - ----------------------------------------- ---------- (ADDRESS OF PRINCIPAL EXECUTIVE OFFICES) (ZIP CODE) REGISTRANT'S TELEPHONE NUMBER: (781) 398-2300 Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days. Yes X No --- --- Indicate the number of shares outstanding of each of the issuer's classes of common stock, as of the latest practicable date. COMMON STOCK 18,276,212 -------------- -------------------------- $.10 PAR VALUE Outstanding April 13, 1998 2 Genome Therapeutics Corp. and Subsidiaries Index to Financial Information (Unaudited) and Other Information Page ---- Part I Financial Information (Unaudited): Consolidated Condensed Balance Sheets as of 3 August 31, 1997 and February 28, 1998 Consolidated Condensed Statements of Operations 4 for the 26 week period ended March 1, 1997 and February 28,1998 Consolidated Statements of Cash Flows for the 5 26 week period ended March 1, 1997 and February 28,1998 Notes to Consolidated Condensed Financial 6-12 Statements for the 26 week period ended March 1, 1997 and February 28,1998 Management's Discussion and Analysis of Financial 13-19 Conditions and Results of Operations Part II Other Information: Other Information 20 Signature 21 2 3 GENOME THERAPEUTICS CORP. AND SUBSIDIARIES CONSOLIDATED CONDENSED BALANCE SHEETS - ------------------------------------------------------------------------------------ August 31, February 28, 1997 1998 (Unaudited) - ------------------------------------------------------------------------------------ Assets Current Assets: Cash and cash equivalents $ 8,602,698 $12,849,230 Marketable securities 34,814,601 24,319,140 Interest receivable 1,280,611 1,131,367 Accounts receivable 55,142 177,549 Unbilled costs and fees 140,320 184,399 Note receivable from officer 160,000 160,000 Prepaid expenses and other current assets 408,240 453,455 ----------- ----------- Total current assets 45,461,612 39,275,140 Equipment and leasehold improvements, at cost: Laboratory and scientific equipment 11,855,630 13,539,653 Leasehold improvements 1,964,981 2,392,929 Equipment and furniture 792,342 1,327,439 Construction-in-progress 1,111,526 4,603,661 ----------- ----------- 15,724,479 21,863,682 Less accumulated depreciation and amortization 5,352,999 6,844,266 ----------- ----------- 10,371,480 15,019,416 Restricted cash 301,500 301,500 Long-term marketable securities 4,124,798 3,872,658 Other assets 428,989 450,861 ----------- ----------- Total assets $60,688,379 $58,919,575 =========== =========== Liabilities and Shareholders' Equity Current Liabilities: Accounts payable $ 1,288,391 $ 1,207,849 Accrued expenses 2,373,788 2,624,111 Deferred revenue 2,335,695 4,068,301 Current maturities of long-term obligations 3,595,120 4,850,790 ----------- ----------- Total current liabilities 9,592,994 12,751,051 ----------- ----------- Long-term obligations, net of current maturities 7,149,188 9,269,701 Shareholders' equity 43,946,197 36,898,823 ----------- ----------- Total liabilities and shareholders' equity $60,688,379 $58,919,575 =========== =========== See Notes to Consolidated Condensed Financial Statements. 3 4 GENOME THERAPEUTICS CORP. AND SUBSIDIARIES CONSOLIDATED STATEMENTS OF OPERATIONS - ------------------------------------------------------------------------------------------------------------------------------- Thirteen Weeks Ended Twenty-six Weeks Ended March 1, February 28, March 1, February 28, 1997 1998 1997 1998 (Unaudited) (Unaudited) - ------------------------------------------------------------------------------------------------------------------------------- Revenues: Collaborative research, licenses, subscription fees and royalties $ 4,787,798 $ 3,861,532 $ 6,828,835 $ 7,857,474 Government research 1,336,153 202,232 3,310,563 463,603 Interest income 756,678 649,495 1,529,758 1,328,986 ----------- ----------- ----------- ----------- Total revenues 6,880,629 4,713,259 11,669,156 9,650,063 ----------- ----------- ----------- ----------- Costs and Expenses: Research and development 4,660,664 7,840,057 8,538,954 14,470,972 Cost of government research 1,429,670 202,232 3,277,316 463,603 General, selling and administrative 859,026 1,112,809 1,590,057 2,134,946 Interest expense 145,553 289,376 271,479 538,987 ----------- ----------- ----------- ----------- Total costs and expenses 7,094,913 9,444,474 13,677,806 17,608,508 ----------- ----------- ----------- ----------- Net loss ($214,284) ($4,731,215) ($2,008,650) ($7,958,445) =========== =========== =========== =========== Basic/diluted net loss per common share ($0.01) ($0.26) ($0.11) ($0.44) =========== =========== =========== =========== Basic/diluted weighted average number of common and common equivalent shares outstanding: 17,566,018 18,215,285 17,521,094 18,135,581 =========== =========== =========== =========== See Notes to Consolidated Condensed Financial Statements. 4 5 GENOME THERAPEUTICS CORP. AND SUBSIDIARIES CONSOLIDATED STATEMENTS OF CASH FLOWS - ---------------------------------------------------------------------------------------------------- Twenty-six Weeks Ended March 1, February 28, 1997 1998 (Unaudited) - ---------------------------------------------------------------------------------------------------- Cash Flows from Operating Activities: Net loss ($2,008,650) ($7,958,445) Adjustments to reconcile net loss to net cash provided by (used in) operating activities: Depreciation and amortization 981,286 1,582,412 Loss on disposal of fixed assets 0 94,309 Deferred compensation 37,050 58,220 Changes in assets and liabilities: Interest receivable 65,402 149,244 Accounts receivable 902,541 (122,407) Unbilled costs and fees (182,823) (44,079) Prepaid expenses and other current assets 150,847 (45,215) Accounts payable (429,694) (80,542) Accrued expenses (79,143) 250,323 Deferred contract revenue 1,424,434 1,732,606 ----------- ------------ Total adjustments 2,869,900 3,574,871 ----------- ------------ Net cash provided by (used in) operating activities 861,250 (4,383,574) ----------- ------------ Cash Flows from Investing Activities: Purchases of marketable securities (8,105,018) (14,528,524) Proceeds from sale of marketable securities 13,349,000 25,276,125 Increase in restricted cash (200,000) 0 Purchases of equipment and leasehold improvements (409,128) (4,553,714) Increase in other assets (56,064) (21,872) ----------- ------------ Net cash provided by investing activities 4,578,790 6,172,015 ----------- ------------ Cash Flows from Financing Activities: Proceeds from exercise of stock options and warrants 592,339 852,851 Proceeds from long-term obligations 0 3,500,000 Payments on long-term obligations (1,345,943) (1,894,760) ----------- ------------ Net cash provided by (used in) financing activities (753,604) 2,458,091 ----------- ------------ Net Increase in Cash and Cash Equivalents 4,686,436 4,246,532 Cash and Cash Equivalents, at beginning of period 10,679,287 8,602,698 ----------- ------------ Cash and Cash Equivalents, at end of period $15,365,723 $ 12,849,230 =========== ============ Supplemental Disclosure of Cash Flow Information: Taxes paid during period $ 23,798 $ 13,500 =========== ============ Interest paid during period $ 271,479 $ 538,988 =========== ============ Supplemental Disclosure of Non-cash Investing Activities: Property and equipment acquired under capital leases $ 3,725,508 $ 1,770,943 =========== ============ See Notes to Consolidated Condensed Financial Statements. 5 6 NOTES TO CONSOLIDATED CONDENSED FINANCIAL STATEMENTS (UNAUDITED) 1. BASIS OF PRESENTATION The consolidated condensed financial statements included herein have been prepared by the Company, without audit, pursuant to the rules and regulations of the Securities and Exchange Commission. In the opinion of management, the unaudited consolidated condensed financial statements have been prepared on the same basis as the audited consolidated financial statements and include all adjustments (consisting only of normal recurring adjustments) necessary for a fair presentation of interim period results. Certain information and footnote disclosures normally included in the financial statements prepared in accordance with generally accepted accounting principles have been condensed or omitted pursuant to such rules and regulations. The Company believes, however, that its disclosures are adequate to make the information presented not misleading. The results of operations for the 26 week period ended February 28, 1998 are not necessarily indicative of the results to be expected for the full fiscal year. The accompanying consolidated condensed financial statements should be read in conjunction with the Company's Form 10-K which was filed with the Securities and Exchange Commission on November 28, 1997. 2. REVENUE RECOGNITION Research and contract revenues are derived from collaborative agreements with pharmaceutical companies, as well as government grants and contract arrangements. Research revenues are recognized as earned under government grants, which consist of cost-plus-fixed-fee contracts and fixed-price contracts. Revenues are recognized under collaborative agreements as earned. Milestone payments from collaborative research and development arrangements are recognized when they are achieved. License fees are recognized as earned. Unbilled costs and fees represent revenue recognized prior to billing. Deferred revenue represents cash amounts received prior to revenue recognition. Subscription fee revenues from the PathoGenome(TM) database are recognized ratably over the access period of the subscription agreement. 3. NET LOSS PER COMMON SHARE In February 1997, the Financial Accounting Standards Board (FASB) issued SFAS No. 128 "Earnings Per Share" which establishes new standards for calculating and presenting earnings per share. This standard is effective for financial statements for periods ending after December 15, 1997, with earlier application not permitted. These condensed financial statements have been prepared and presented based on the new standard. Prior period amounts have been restated to conform to the current year presentation. Basic net loss per share is computed by dividing net loss by the weighted average number of common shares outstanding during the period. Diluted net loss per share for the periods presented is the same as basic net loss per share as the inclusion of the potential common stock equivalents would be antidilutive. 6 7 4. CASH, CASH EQUIVALENTS AND MARKETABLE SECURITIES The Company applies SFAS No. 115, Accounting for Certain Investments in Debt and Equity Securities. At February 28, 1998, the Company's cash equivalents and marketable securities are classified as held-to-maturity, as the Company has the positive intent and ability to hold these securities to maturity. Cash equivalents are short-term, highly liquid investments with original maturities of less than three months. Marketable securities are investment securities with original maturities of greater than three months. Cash equivalents are carried at cost, which approximates market value, and consist of money market funds, repurchase agreements and debt securities. Marketable securities are recorded at amortized cost, which approximates market value. The Company has not recorded any realized holding gains or losses on its marketable securities. Marketable securities consist of commercial paper and U.S. Government debt securities. The Company has $301,500 in restricted cash at August 31, 1997 and February 28, 1998 in connection with certain long-term obligations (See Note 6). 5. USE OF ESTIMATES IN THE PREPARATION OF FINANCIAL STATEMENTS The preparation of financial statements in conformity with generally accepted accounting principles requires management to make estimates and assumptions that affect the reported amounts of assets and liabilities and disclosure of contingent assets and liabilities at the date of the financial statements and the reported amounts of revenues and expenses during the reporting period. Actual results could differ from those estimates. 6. LONG-TERM OBLIGATIONS On February 28, 1997, the Company entered into an equipment line of credit under which it can finance up to $6,000,000 of laboratory, computer and office equipment. Borrowings are payable in 48 monthly installments at a variable interest rate of prime (8.5% as of February 28, 1998) plus one-quarter of one percent. At any time during the term of this agreement, the Company may elect to convert to a fixed rate loan at the prevailing interest rate. The Company is required to maintain certain restricted cash balances, as defined (see Note 4). In addition, the Company is required to maintain certain financial ratios pertaining to minimum cash balances, tangible net worth and debt service coverage. The Company has approximately $1,149,000 available under this equipment line of credit at February 28, 1998. 7 8 On March 9, 1998, subsequent to quarter-end, the company modified the above financing arrangement by increasing the equipment line of credit by $4,300,000 from $6,000,000 to $10,300,000. The new equipment line of credit will be utilized to finance laboratory, computer and office equipment over the next thirteen months. Borrowings are payable in 15 quarterly installments commencing March 31, 1999. All other terms and conditions remained the same. Including the amendment, the Company has 5,449,000 available under the line of credit. On July 31, 1997, the Company entered into a financing arrangement under which it can finance up to $6,000,000 of laboratory and office renovations at its Beaver Street facility. The principal amount of the loan will be repaid over 48 consecutive months commencing July 1, 1998 at the prevailing 12 month Eurodollar rate (12-month Eurodollar rate was 6.125% as of February 28, 1998) plus one and a half percent. The Company is required to maintain certain financial ratios pertaining to minimum cash balances, debt to net worth and tangible net worth. At February 28, 1998, the Company borrowed the full amount under this arrangement; of which approximately $599,000 has not been utilized to finance the Company's purchases, and is included in cash and cash equivalents. The Company is required to maintain certain restricted cash balances, upon the occurrence of certain events, as defined. The Company had entered into other capital lease arrangements under which it financed approximately $9,725,000 of certain laboratory, computer and office equipment. These leases are payable in 36 monthly installments. The interest rates range from 7.52% to 11.42%. The Company is required to maintain certain restricted cash balances, as defined (see Note 4). In addition, the Company is required to maintain certain financial ratios pertaining to minimum cash balances, tangible net worth, debt to tangible net worth and debt service coverage. The Company has approximately $511,000 available under one of these capital lease agreements at February 28, 1998. 7. COLLABORATIVE AGREEMENTS SCHERING-PLOUGH In December 1995, the Company entered into a collaboration and license agreement with Schering Corporation and Schering-Plough Ltd. (collectively, "Schering-Plough") providing for the use by Schering-Plough of the Company's Staph. aureus genomic database. The Company is sequencing to identify new gene targets for development of antibiotics effective against drug-resistant infectious organisms. As part of this agreement, the Company granted Schering-Plough exclusive access to certain of the Company's genomic sequence databases. The Company also granted Schering-Plough a nonexclusive license to use the Company's bioinformatics systems for Schering-Plough's internal use in connection with the genomic databases licensed to Schering-Plough under the agreement and other genomic databases Schering-Plough develops or acquires. The Company also agreed to undertake certain research efforts to identify bacteria-specific genes essential to microbial survival and to develop biological assays to be used by Schering-Plough in 8 9 screening natural product and compound libraries to identify antibiotics with new mechanisms of action. Under the agreement, Schering-Plough agreed to pay the Company a minimum of $13.3 million for an up-front payment, research funding and milestone payments. Subject to the achievement of additional product development milestones and Schering-Plough's election to extend the research collaboration, Schering-Plough has agreed to pay the Company up to an additional $30.2 million in research funding and milestone payments. On January 26, 1998 Schering-Plough elected to extend the research program to the full term of the agreement which ends on March 31, 2000. The agreement grants Schering-Plough exclusive worldwide rights to make, use and sell pharmaceutical and vaccine products based on the genomic sequence databases licensed to Schering-Plough by the Company and on the technology developed in the course of the research program. The Company has also granted Schering-Plough a right of first negotiation if during the term of the research plan the Company desires to enter into a collaboration with a third party with respect to the development or sale of any compounds that are targeted against, as their primary indication, Staph. aureus, which is the principal subject of the Company's agreement with Schering-Plough. The Company will be entitled to receive royalties on Schering-Plough's sale of therapeutic products and vaccines developed using the technology licensed from the Company. Subject to certain limitations, the Company retained the rights to make, use and sell diagnostic products developed based on the Company's genomic database licensed to Schering-Plough or the technology developed in the course of the research program. For the 13 week periods ended February 28, 1998 and March 1, 1997, the Company recorded revenue of $575,000 and $934,000, respectively, under this agreement, which consisted of sponsored research funding. For the 26 week period ended February 28, 1998, the Company recorded revenue of $1,912,000 under this agreement, which consisted of sponsored research funding and milestone payments . For the 26 week period ended March 1, 1997, the Company recorded revenue of $1,751,000 under this agreement, which consisted of sponsored research funding. The Company recorded $356,000 and $18,000 as deferred revenue at February 28, 1998 and August 31, 1997, respectively. In December 1996, the Company entered into its second research collaboration and license agreement with Schering-Plough. This agreement calls for the use of genomics to discover new therapeutics for treating asthma. As part of the agreement, the Company will employ its high-throughput positional cloning, bioinformatics, and genomics sequencing capabilities to identify genes and associated proteins that can be utilized by Schering-Plough to develop new pharmaceuticals. Under this agreement, the Company has granted Schering-Plough exclusive access to (i) certain gene sequence databases made available under this research program, (ii) information made available to the Company under certain third party research agreements, (iii) an exclusive worldwide right and license to make, use and sell pharmaceutical and vaccine products 9 10 based on the rights to develop and commercialize diagnostic products that may result from this collaboration. Under the agreement, Schering-Plough has agreed to pay an initial license fee and an expense allowance to the Company. Schering-Plough is also required to fund a research program for a minimum number of years with an option to extend. In addition, upon completion of certain scientific developments, Schering-Plough will make milestone payments to the Company, as well as pay royalties to the Company based on sales of therapeutics product developed from this collaboration. If all milestones are met and the research program continues for its full term, total payments to the Company will be approximately $67 million, excluding royalties. Of the total potential payments, approximately $22.5 million represents license fees and research payments, and $44.5 million represents milestone payments based on achievement of research and product development milestones. For the 13 week period ended February 28, 1998, the Company recorded revenue of $1,799,000 under this agreement, which consisted of sponsored research funding, subcontract activity and a milestone payment. For the 13 week period ended March 1, 1997, the Company recorded revenue of $2,818,000 under this agreement, which consisted of sponsored research funding, license fee, expense allowance and subcontract activity. For the 26 week period ended February 28, 1998, the Company recorded revenue of $2,951,000 under this agreement, which consisted of sponsored research funding, subcontract activity and a milestone payment. For the 26 week period ended March 1, 1997, the Company recorded revenue of $2,818,000 under this agreement, which consisted of sponsored research funding, license fee, expense allowance and subcontract activity. The Company recorded $1,040,000 and $1,400,000 as deferred revenue at February 28, 1998 and August 31, 1997, respectively. In September 1997, the Company entered into its third research collaboration and license agreement with Schering-Plough to use genomics to discover and develop new pharmaceutical products for treating fungal infections. Under the agreement, the Company will employ its bioinformatics, high-throughput sequencing and functional genomics capabilities to identify and validate genes and associated proteins as drug discovery targets that can be utilized by Schering-Plough to develop novel antifungal treatments. Schering-Plough will receive exclusive access to the genomic information developed in the collaboration related to two fungal pathogens, Candida albicans and Aspergillus fumigatus . Schering-Plough will also receive exclusive worldwide right to make, use and sell products based on the technology developed in the course of the research program. In return, Schering-Plough has agreed to fund a research program for a minimum number of years with an option to extend. If all milestones are met and the research program continues for its full term, total payments to the Company will approximate $30.7 million, excluding royalties. Of the total potential payment, approximately $7.7 million represents license fees and research 10 11 payments and $23 million represents milestone payments based on achievement of research and product development milestones. Additionally, the Company entered into a database subscription agreement with Schering-Plough (See Database Subscriptions). For the 13 and 26 week periods ended February 28, 1998, the Company recorded revenue of $570,000 and $1,007,000, respectively, under this agreement, which consisted of sponsored research funding. The Company recorded $752,000 as deferred revenue at February 28, 1998. ASTRA AB In August 1995, the Company entered into a collaboration agreement with Astra Hassle AB ("Astra") to develop pharmaceutical, vaccine and diagnostic products effective against gastrointestinal infection or any other disease caused by H. pylori. The Company granted Astra exclusive access to the Company's H. pylori genomic sequence database and exclusive worldwide rights to make, use and sell products based on the Company's H. pylori technology. The agreement also provides for a four-year research collaboration to further develop and annotate the Company's H. pylori genomic sequence database, identify therapeutic and vaccine targets and develop appropriate biological assays. This research is being directed by a Joint Management Committee and a Joint Research Committee, each consisting of representative from both parties. Under this agreement, Astra agreed to pay the Company a minimum of approximately $11 million and, subject to the achievement of certain product development milestones, up to approximately $22 million ( and possibly a greater amount if more than one product is developed under the agreement) in license fees, expense allowances, research funding and milestone payments. Of such fees, $500,000 is credited against any future royalties payable to the Company by Astra under the agreement. Astra is obligated to provide funding for the research program for a minimum of two and one-half years. On July 21, 1997, Astra elected to extend the research program to at least September 1998. The Company will also be entitled to receive royalties on Astra's sale of any products (i) protected by claims of patents licensed exclusively to Astra by the Company pursuant to the agreement, or (ii) the discovery of which was enabled in a significant manner by the genomic database licensed to Astra by the Company. The Company has the right, under certain circumstances, to convert Astra's license to a nonexclusive license in the event Astra is not actively pursuing commercialization of the technology. For the 13 week period ended February 28, 1998, the Company recorded revenue of $359,000 under this agreement, which consisted of sponsored research funding. For the 13 week period ended March 1, 1997, the Company recorded revenue of $1,035,000 under this agreement, which consisted of sponsored research funding and a milestone payment. For the 26 week period ended February 28, 1998, the Company recorded revenue of $1,069,000 under this agreement, which consisted of sponsored research funding and a 11 12 milestone payment. For the 26 week period ended March 1, 1997, the Company recorded revenue of $1,642,000 under this agreement, which consisted of sponsored research funding and a milestone payment. The Company recorded $501,000 and $503,000 as deferred revenue at February 28, 1998 and August 31, 1997, respectively. 8. DATABASE SUBSCRIPTIONS In May 1997, the Company entered into a license agreement with Bayer AG, ("Bayer") to provide Bayer with a nonexclusive access to the Company's proprietary genome sequence database, PathoGenome(TM) and associated information relating to microbial organisms. The subscription agreement calls for the Company to provide Bayer with periodic data updates, analysis tools and software support. Under the agreement, Bayer has agreed to pay a license fee, annual subscription fees and royalties on any molecules developed as a result of access to the information provided by the PathoGenome(TM) database. The Company retains all rights associated with protein therapeutic, diagnostic and vaccine use of bacterial genes or gene products. In September 1997, the Company entered into license agreements with Bristol-Myers Squibb and Schering-Plough to provide both companies with nonexclusive access to the Company's proprietary genome sequence database, PathoGenome(TM) and associated information relating to microbial organisms. The subscription agreements call for the Company to provide both Bristol-Myers Squibb and Schering-Plough with periodic data updates, analysis tools and software support. Under the agreements, Bristol-Myers Squibb and Schering-Plough have agreed to pay annual subscription fees and royalties on any molecules developed as a result of access to the information provided by the PathoGenome(TM) database. The Company retains all rights associated with protein therapeutic, diagnostic and vaccine use of bacterial genes or gene products. For the 13 and 26 week periods ended February 28, 1998, the Company recognized revenue of $543,000 and $918,000, respectively, under these agreements which consisted of subscription fees. The Company recorded deferred revenue of $1,417,000 under these agreements at February 28, 1998. 12 13 MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS OVERVIEW Genome Therapeutics Corp. ("the Company") is a leader in the field of genomics-based drug discovery--the identification and functional characterization of genes. The Company has over ten years of experience in positional cloning, having served as one of the primary researchers under genome programs sponsored by the United States government, and has developed numerous techniques and tools that are widely used in this field. The Company's commercial gene discovery strategy capitalizes on its pioneering work in genomics by applying its high-throughput sequencing technology and positional cloning, its experience and skills in functional genomics and its bioinformatics capabilities. The two areas of focus are: the discovery and characterization of (i) genes of pathogens that are responsible for many serious diseases and (ii) human disease genes. The Company believes that its genomic discoveries may lead to the development of novel therapeutics, vaccines, and diagnostic products by it and its strategic partners. The Company has entered into several corporate collaborations in connection with its pathogen and human gene discovery programs. The Company does not anticipate revenues from product sales on a sustained basis until such time that products based on the Company's research efforts are commercialized, if any. The Company's product development strategy is to form collaborations with pharmaceutical and biotechnology companies generating revenues from licensing fees, sponsored research and milestone payments. Additionally, the Company will sell nonexclusive access to its proprietary genome sequence database, PathoGenome(TM). These collaborations are expected to result in the discovery and commercialization of novel therapeutics, vaccines and diagnostics, generating royalty payments to the Company from product sales downstream. In order for a product to be commercialized based on the Company's research, it will be necessary for the collaborators to conduct preclinical tests and clinical trials, obtain regulatory clearances and make manufacturing, distribution and marketing arrangements. Accordingly, the Company does not expect to receive royalties based upon product revenues for many years. For the past several years, the Company's primary sources of revenue have been government research grants and contracts and collaborative agreements with pharmaceutical company partners. As of February 28, 1998, the Company had signed four collaborative agreements. The Company entered into corporate collaborations with Astra Hassle AB ("Astra") relating to H. Pylori in August 1995 and with Schering Corporation and Schering-Plough, Ltd. (collectively, "Schering-Plough") in December 1995 providing for the use by Schering-Plough of the Company's Staph. aureus genomic database to identify new gene targets for the development of novel antibiotics. In December 1996, the Company entered into its second research collaboration with Schering-Plough to identify genes and associated proteins that can be utilized by Schering-Plough to develop new pharmaceuticals for treating asthma. In September 13 14 1997, the Company entered into its third research collaboration with Schering-Plough to use genomics to discover and develop new pharmaceutical products for treating fungal infections. In May 1997, the Company introduced its proprietary genome sequence database, PathoGenome(TM) and sold its first subscription to Bayer AG ("Bayer"). Under the agreement, Bayer will receive nonexclusive access to the Company's PathoGenome(TM) database and associated information relating to microbial organisms. In September 1997, the Company sold two additional subscriptions to its PathoGenome(TM) database to Bristol-Myers Squibb and Schering-Plough. As of February 28, 1998, the Company had outstanding approximately $2,147,000 of government research grants and contracts under which services were yet to be performed. These grants and contracts call for services to be performed over the next 24 months. The Company's government research grants and contracts are typically funded annually and are subject to appropriation by the United States Congress each year. Funding may be discontinued or reduced at any time by Congress. As of February 28, 1998, the funded portion of these grants and contracts was $1,997,000. For the 26 week periods ended March 1, 1997 and February 28, 1998, revenue recognized pursuant to United States government research grants and research contracts accounted for approximately 28% and 5%, respectively, of the Company's total revenues. The Company has incurred significant losses, since inception, with an accumulated deficit of approximately $52,514,000 at February 28, 1998. The Company's results of operations have fluctuated from period to period and may continue to fluctuate in the future based upon the timing and composition of funding under existing and new collaborative agreements and government research grants and contracts. The Company is subject to risks common to companies in its industry including unproven technology and business strategy, availability of, and competition for, family resources, reliance upon collaborative partners and others, history of operating losses, need for future capital, competition, patent and proprietary rights, dependence on key personnel, uncertainty of regulatory approval, uncertainty of pharmaceutical pricing, health care reform and related matters, product liability exposure, and volatility of the Company's stock price. 14 15 RESULTS OF OPERATIONS THIRTEEN WEEK PERIOD ENDED MARCH 1, 1997 AND FEBRUARY 28, 1998 REVENUE Total revenues decreased 31% from $6,881,000 for the 13 week period ended March 1, 1997 to $4,713,000 for the 13 week period ended February 28, 1998. Collaborative research, licenses, subscription fees and royalties decreased 19% from $4,788,000 for the 13 week period ended March 1, 1997 to $3,862,000 for the 13 week period ended February 28, 1998. The decrease in collaborative research, licenses, subscription fees and royalties was primarily attributable to a license fee received in the prior year under the Company's collaboration agreement with Schering-Plough for treating asthma which began in December 1996. The decrease in collaborative research, licenses, subscription fees and royalties was partially offset by an increase in sponsored research revenue received this year under the Company's collaboration research agreements with Schering-Plough for treating both asthma and fungal infections. Additionally, the decrease was partially offset by subscription fee revenue earned this year under the Company's license agreements with Bayer, Bristol-Myers Squibb and Schering-Plough providing each company with nonexclusive access to the Company's proprietary genome sequence database, PathoGenome(TM) and associated information relating to microbial organisms. Government research revenue decreased 85% from $1,336,000 for the 13 week period ended March 1, 1997 to $202,000 for the 13 week period ended February 28, 1998. The decrease in government research revenue was primarily attributable to a shift in personnel from government research programs to company-sponsored research and development programs, in particular, the microbial genetic database program, PathoGenome(TM). Revenue derived from government research grants and contracts is generally based upon direct cost such as labor, laboratory supplies, as well as an allocation for reimbursement of a portion of overhead expenses. Interest income decreased 14% from $757,000 for the 13 week period ended March 1, 1997 to $649,000 for the 13 week period ended February 28, 1998 reflecting a decrease in funds available for investment. COST AND EXPENSES Total cost and expenses increased 33% from $7,095,000 for the 13 week period ended March 1, 1997 to $9,444,000 for the 13 week period ended February 28, 1998. Research and development expenses, which include company-sponsored research and development and research funded pursuant to arrangements with the Company's corporate collaborators, increased 68% from $4,661,000 for the 13 week period ended March 1, 1997 to $7,840,000 for the 13 week period ended February 28, 1998. The increase in research and development expenses was primarily attributable to increases in 15 16 both personnel and laboratory expenses associated with the Company's expansion of its pathogen, microbial genetic database, human gene discovery and functional genomics research programs. The increase consisted primarily of increases in payroll and related expenses, laboratory supplies and overhead expenses. The cost of government research decreased 86% from $1,430,000 for the 13 week period ended March 1, 1997 to $202,000 for the 13 week period ended February 28, 1998. The decrease in cost of government research was primarily attributable to the decrease in government research revenues. Cost of government research, as a percentage of government research revenue, was 107% and 100% for the 13 week periods ended March 1, 1997 and February 28, 1998, respectively. Selling, general and administrative expenses increased 30% from $859,000 for the 13 week period ended March 1, 1997 to $1,113,000 for the 13 week period ended February 28, 1998. The increase in selling, general and administrative expenses was primarily due to increases in payroll and related expenses and consulting fees. Interest expense increased 99% from $146,000 for the 13 week period ended March 1, 1997 to $289,000 for the 13 week period ended February 28, 1998. The increase in interest expense was attributable to increases in the Company's outstanding balance under its long-term obligations. TWENTY-SIX WEEK PERIOD ENDED MARCH 1, 1997 AND FEBRUARY 28, 1998 REVENUE Total revenues decreased 17% from $11,669,000 for the 26 week period ended March 1, 1997 to $9,650,000 for the 26 week period ended February 28, 1998. Collaborative research, licenses, subscription fees and royalties increased 15% from $6,829,000 for the 26 week period ended March 1, 1997 to $7,857,000 for the 26 week period ended February 28, 1998. The increase in collaborative research, licenses, subscription fees and royalties was primarily attributable to higher milestone payments and sponsored research revenues received this year under the Company's collaboration research agreements with Astra and Schering-Plough, as well as subscription fee revenue earned this year under the Company's license agreements with Bayer, Bristol-Myers Squibb and Schering-Plough providing each company with nonexclusive access to the Company's proprietary genome sequence database, PathoGenome(TM) and associated information relating to microbial organisms. Government research revenue decreased 86% from $3,311,000 for the 26 week period ended March 1, 1997 to $464,000 for the 26 week period ended February 28, 1998. The decrease in government research revenue was primarily attributable to a shift in personnel from government research programs to company-sponsored research and development programs, in particular, the microbial genetic database program, PathoGenome(TM). 16 17 Interest income decreased 13% from $1,530,000 for the 26 week period ended March 1, 1997 to $1,329,000 for the 26 week period ended February 28, 1998 reflecting a decrease in funds available for investment. COST AND EXPENSES Total cost and expenses increased 29% from $13,678,000 for the 26 week period ended March 1, 1997 to $17,609,000 for the 26 week period ended February 28, 1998. Research and development expenses, which include company-sponsored research and development and research funded pursuant to arrangements with the Company's corporate collaborators, increased 69% from $8,539,000 for the 26 week period ended March 1, 1997 to $14,471,000 for the 26 week period ended February 28, 1998. The increase in research and development expenses was primarily attributable to increases in both personnel and laboratory expenses associated with the Company's expansion of its pathogen, microbial genetic database, human gene discovery and functional genomics research programs. The increase consisted primarily of increases in payroll and related expenses, laboratory supplies and overhead expenses. The cost of government research decreased 86% from $3,277,000 for the 26 week period ended March 1, 1997 to $464,000 for the 26 week period ended February 28, 1998. The decrease in cost of government research was primarily attributable to the decrease in government research revenues. Cost of government research, as a percentage of government research revenue, was 99% and 100% for the 26 week periods ended March 1, 1997 and February 28, 1998, respectively. Selling, general and administrative expenses increased 34% from $1,590,000 for the 26 week period ended March 1, 1997 to $2,135,000 for the 26 week period ended February 28, 1998. The increase in selling, general and administrative expenses was primarily due to increases in payroll and related expenses and consulting fees. Interest expense increased 99% from $271,000 for the 26 week period ended March 1, 1998 to $539,000 for the 26 week period ended February 28, 1998. The increase in interest expense for was attributable to increases in the Company's outstanding balance under its long-term obligations. LIQUIDITY AND CAPITAL RESOURCES Since September 1, 1992, the Company's primary sources of cash have been revenue from government research grants and contracts, revenue from collaborative research agreements, borrowings under equipment lending facilities and capital leases and proceeds from sale of equity securities. 17 18 In fiscal 1995, the Company received net proceeds of approximately $2,403,000 from the private sale of common stock and warrants and the exercise of stock options. In fiscal 1996, the Company closed a public offering of 3,000,000 shares of its common stock at $13.00 per share, resulting in proceeds of approximately $36,007,000, net of issuance costs. The Company also sold an additional 450,000 shares of its common stock in the underwriter's over-allotment, resulting in proceeds of $5,515,000, net of issuance costs. As of February 28, 1998, the Company had cash, cash equivalents, restricted cash and long and short-term marketable securities of approximately $41,343,000. The Company has various arrangements under which it can finance certain office and laboratory equipment and leasehold improvements. Under these arrangements, the Company is required to maintain certain financial ratios, including minimum levels of tangible net worth, total indebtedness to tangible net worth, maximum loss, debt service coverage and minimum restricted cash balances. On March 9, 1998, subsequent to quarter-end, the Company modified one of the finance arrangements to make available an additional $4,300,000 in order to finance certain laboratory, computer and office equipment. Borrowings are payable in 15 quarterly installments commencing March 31, 1999. All other terms and conditions remained the same. Including the amendment, the Company had $5,960,000 available under these arrangements for future borrowings. Additionally, the Company received a $6,000,000 advance to finance office and laboratory renovations at its Beaver Street facility of which approximately $599,000 had not been expended at February 28, 1998. The Company's operating activities provided cash of approximately $861,000 for the 26 week period ended March 1, 1997. The Company's operating activities used cash of approximately $4,384,000 for the 26 week period ended February 28, 1998 primarily to fund operating losses. For the 26 week periods ended March 1, 1997 and February 28, 1998, the Company's investing activities provided cash of approximately $4,579,000 and $6,172,000, respectively, from the sale of marketable securities, partially offset by purchases of marketable securities, and property and equipment. Financing activities used cash of approximately $754,000 for the 26 week period ended March 1, 1997 primarily for payments of capital lease obligations, partially offset by the exercise of stock options. Financing activities provided cash of approximately $2,458,000 for the 26 week period ended February 28, 1998 primarily from proceeds from long-term obligations and exercise of stock options, net of payments of long-term obligations. 18 19 Capital expenditures totaled $1,771,000 for the 26 week period ended February 28, 1998 consisting of laboratory, computer and office equipment. The Company currently estimates that it will acquire an additional $3,229,000 in capital equipment in fiscal 1998 consisting of primarily computer and laboratory equipment which it intends to finance under existing and new financing arrangements. The Company is also in the process of consolidating its operations at its Beaver Street facility at an estimated cost of $6,700,000 which consists of office and laboratory renovations. As of February 28, 1998, the Company had incurred approximately $5,401,000 of capital improvements consisting of $847,000 during fiscal 1997 and $4,554,000 during the 26 week period ended February 28,1998. The Company plans to spend an additional $1,299,000 during fiscal 1998 on this renovation project. The Company plans to utilize existing and new capital lease and equipment financing arrangements to finance substantially all of these capital improvements. At August 31, 1997, the Company had net operating loss and tax credit carryforwards of approximately $49,065,000 and $1,128,000, respectively. These losses and tax credits are available to reduce federal taxable income and federal income taxes, respectively, in future years, if any. These losses and tax credits are subject to review and possible adjustment by the Internal Revenue Service and may be limited in the event of certain cumulative changes in ownership interests of significant shareholders over a three-year period in excess of 50%. The Company does not believe it has experienced a cumulative ownership change in excess of 50%. However, there can be no assurance that ownership changes will not occur in future periods which will limit the Company's ability to utilize the losses and tax credits. The Company believes that its existing capital resources are adequate to meet its cash requirements for the foreseeable future. There is no assurance, however, that changes in the Company's plans or events affecting the Company's operations will not result in accelerated or unexpected expenditures. The Company may seek additional funding through public or private financing and expects additional funding through collaborative or other arrangements with corporate partners. There can be no assurance, however, that additional financing will be available from any of these sources or will be available on terms acceptable to the Company. Statements in this Form 10-Q that are not strictly historical are "forward looking" statements as defined in the Private Securities Litigation Reform Act of 1995. The actual results may differ from those projected in the forward looking statement due to risks and uncertainties that exist in the Company's operations and business environment, described more fully in the Company's Annual Report on Forms 10-K for the year ended August 31, 1997, filed with the Securities and Exchange Commission. 19 20 PART II Item 1. LEGAL PROCEEDINGS None Item 2. CHANGES IN SECURITIES None Item 3. DEFAULTS UPON SENIOR SECURITIES None Item 4. SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS See Insert A Item 5. OTHER INFORMATION None. Item 6. EXHIBITS AND REPORTS ON FORM 8-K a) EXHIBITS: 10.41 Collaboration and License Agreement between the Company and Schering Corporation, dated as of September 22, 1997.(25)* 10.42 Collaboration and License Agreement between the Company and Schering-Plough Ltd., dated as of September 22, 1997.(25)* * Confidential treatment requested with respect to a portion of this Exhibit. (25) Filed within. b) REPORTS ON FORM 8-K None. 20 21 Signature Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has caused this report to be signed on its behalf by the undersigned thereunto duly authorized who also serves in the capacity of principal financial officer. Genome Therapeutics Corp. /s/ Fenel M. Eloi ----------------------------- Fenel M. Eloi (Principal Financial Officer) Date: April 14, 1998 21 22 INSERT A The Company's Special Meeting in lieu of an Annual Meeting was held on January 26, 1998. At the meeting, shareholders took the following actions: 1) Election of Directors Shares Voted Name Of Nominee For Withhold Authority --------------- ------------ ------------------ Robert J. Hennessey 15,885,902 203,803 Philip J. Leder 15,885,942 203,763 Lawrence Levy 15,820,040 269,665 Donald J. McCarren 15,829,782 259,923 Steven M. Rauscher 15,887,192 202,513 2) To approve the Company's 1997 Stock Option Plan. For Against Abstain No Voting --------- ------- ------- --------- 8,239,127 941,520 136,815 6,772,243 3) To approve of the Company's 1997 Directors' Deferred Stock Plan. For Against Abstain No Voting --------- ------- ------- --------- 8,715,412 439,757 162,293 6,772,243 4) To ratify the selection of Arthur Andersen LLP as the Company's auditors for the fiscal year ending August 31, 1998. For Against Abstain No Voting ---------- ------- ------- --------- 15,962,185 71,859 55,661 0 22