1 SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 FORM 10-Q [X} QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the quarterly period ended June 30, 1998 OR [ ] TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934 For the transition period from __________ to __________ COMMISSION FILE NUMBER 0-28494 MILLENNIUM PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) DELAWARE 04-3177038 (State or other jurisdiction of (I.R.S. Employer Identification No.) incorporation or organization) 238 MAIN STREET, CAMBRIDGE, MA 02142 (Address of principal executive offices, including zip code) 617-679-7000 (Registrant's telephone number, including area code) Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days. Yes [X] No [ ] Number of shares of Common Stock, $.001 par value per share, outstanding as of August 6, 1998 was 29,547,516. 2 MILLENNIUM PHARMACEUTICALS, INC. REPORT ON FORM 10-Q FOR THE QUARTERLY PERIOD ENDED JUNE 30, 1998 TABLE OF CONTENTS PAGE ---- PART I - FINANCIAL INFORMATION ITEM 1. FINANCIAL STATEMENTS (unaudited) Condensed Consolidated Balance Sheets June 30, 1998 and December 31, 1997 3 Condensed Consolidated Statements of Operations and Comprehensive Loss for the three and six months ended June 30, 1998 and 1997 4 Condensed Consolidated Statements of Cash Flows for the six months ended June 30, 1998 and 1997 5 Notes to Condensed Consolidated Financial Statements 6 ITEM 2. MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS 7 PART II - OTHER INFORMATION 10 ITEM 4. SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS 10 ITEM 6. EXHIBITS AND REPORTS ON FORM 8-K 11 SIGNATURES 12 EXHIBIT INDEX 13 2 3 Millennium Pharmaceuticals, Inc. Condensed Consolidated Balance Sheets JUNE 30, DECEMBER 31, (in thousands, except par value and shares) 1998 1997 ------- ----------- (Unaudited) (Note) ASSETS Current assets: Cash and cash equivalents $ 34,078 $ 69,236 Marketable securities 40,472 27,321 Due from strategic partners 10,226 778 Prepaid expenses and other current assets 3,139 4,595 --------- --------- Total current assets 87,915 101,930 Property and equipment, net 32,953 29,030 Restricted cash and other assets 11,737 5,140 Intangible assets, net 7,062 8,413 --------- --------- $ 139,667 $ 144,513 ========= ========= LIABILITIES AND STOCKHOLDERS' EQUITY Current liabilities: Accounts payable $ 5,647 $ 3,165 Accrued expenses 5,203 4,294 Deferred revenue 2,507 3,053 Current portion of capital lease obligations 7,505 5,847 --------- --------- Total current liabilities 20,862 16,359 Capital lease obligations, net of current portion 20,330 19,809 Minority interest 10,588 16,590 Commitments and contingencies Stockholders' equity: Preferred Stock, $0.001 par value; 5,000,000 shares authorized; none issued -- -- Common Stock, $0.001 par value: 100,000,000 shares authorized; 29,530,230 shares in 1998 and 29,169,398 shares in 1997 issued and outstanding 30 29 Additional paid-in capital 195,372 193,254 Deferred compensation (1,373) (1,992) Notes receivable from officers (126) (166) Unrealized gain (loss) on marketable securities (23) (4) Accumulated deficit (105,993) (99,366) --------- --------- Total stockholders' equity 87,887 91,755 --------- --------- Total liabilities and stockholders' equity $ 139,667 $ 144,513 ========= ========= Note: The balance sheet at December 31, 1997 has been derived from the audited financial statements at that date but does not include all of the information and footnotes required by generally accepted accounting principles for complete financial statements. See notes to condensed consolidated financial statements. 3 4 Millennium Pharmaceuticals, Inc. Condensed Consolidated Statements of Operations and Comprehensive Loss (Unaudited) THREE MONTHS ENDED SIX MONTHS ENDED JUNE 30, JUNE 30, 1998 1997 1998 1997 ---------- ---------- ---------- ---------- (in thousands, except per share and share data) - ---------------------------------------------- Revenue under strategic alliances $ 28,236 $ 13,372 $ 49,279 $ 24,328 Costs and expenses: Research and development 28,036 18,333 50,465 29,932 General and administrative 5,927 4,514 11,838 7,863 Acquired in-process research and development -- -- -- 83,800 Amortization of intangible assets 676 675 1,351 1,046 ----------- ----------- ----------- ----------- 34,639 23,522 63,654 122,641 ----------- ----------- ----------- ----------- Loss from operations (6,403) (10,150) (14,375) (98,313) Interest income 1,339 976 2,786 2,053 Interest expense (479) (303) (1,124) (636) Minority interest 3,342 -- 6,086 -- ----------- ----------- ----------- ----------- Net Loss $ (2,201) $ (9,477) $ (6,627) $ (96,896) Unrealized gain (loss) on marketable securities 19 84 (19) (4) ----------- ----------- ----------- ----------- Comprehensive loss (2,182) (9,393) (6,646) (96,900) =========== =========== =========== =========== Basic and diluted net loss per share $ (0.07) $ (0.33) $ (0.23) $ (3.50) Shares used in computing basic and diluted net loss per share 29,500,860 28,764,467 29,396,532 27,663,696 =========== =========== =========== =========== See notes to condensed consolidated financial statements. 4 5 Millennium Pharmaceuticals, Inc. Condensed Consolidated Statements of Cash Flows (Unaudited) SIX MONTHS ENDED JUNE 30, 1998 1997 (in thousands) -------- -------- CASH USED IN OPERATIONS $(17,906) $ (5,874) INVESTING ACTIVITIES Purchase of property and equipment (3,004) (4,842) Sale of marketable securities 35,785 37,805 Purchase of marketable securities (48,936) (23,487) -------- -------- Net cash (used in) provided by investing activities (16,155) 9,476 FINANCING ACTIVITIES Acquisition of ChemGenics, net of cash acquired -- 7,087 Net proceeds from employee stock purchases 2,134 910 Repurchase of Common Stock (15) (86) Payments of long-term debt -- (800) Payments of capital lease obligations (3,216) (2,210) -------- -------- Net cash (used in) provided by financing activities (1,097) 4,901 -------- -------- (Decrease) increase in cash and cash equivalents (35,158) 8,503 Cash and cash equivalents at beginning of period 69,236 10,088 -------- -------- Cash and cash equivalents at end of period $ 34,078 $ 18,591 ======== ======== NON-CASH INVESTING AND FINANCING ACTIVITIES: Equipment acquired under capital leases $ 5,395 $ 6,202 ======== ======== See notes to condensed consolidated financial statements. 5 6 MILLENNIUM PHARMACEUTICALS, INC. NOTES TO CONDENSED CONSOLIDATED FINANCIAL STATEMENTS JUNE 30, 1998 (unaudited) 1 - BASIS OF PRESENTATION The accompanying condensed consolidated financial statements have been prepared in accordance with generally accepted accounting principles for interim financial information and with the instructions to Form 10-Q and Article 10 of Regulation S-X. Accordingly, they do not include all of the information and footnotes required by generally accepted accounting principles for complete financial statements. In the opinion of management, all adjustments (consisting of normal recurring accruals) considered necessary for a fair presentation have been included. Interim results for the six-month period ended June 30, 1998 are not necessarily indicative of the results that may be expected for the year ended December 31, 1998. For further information, refer to the financial statements and footnotes thereto included in the Company's Annual Report on 10-K for the fiscal year ended December 31, 1997 which was filed with the Securities Exchange Commission on March 26, 1998. As of January 1, 1998, the Company adopted Statement 130, Reporting Comprehensive Income. Statement 130 establishes new rules for the reporting and display of comprehensive income and its components; however, the adoption of this Statement had no impact on the Company's net loss or shareholders' equity. Statement 130 requires unrealized gains or losses on the Company's available-for-sale securities, which prior to adoption were reported separately in shareholders' equity, to be included in other comprehensive income. Prior year financial statements have been reclassified to conform to the requirements of Statement 130. 6 7 ITEM 2. MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS. This Report on Form 10-Q contains forward-looking statements. For this purpose, any statements contained herein that are not statements of historical fact may be deemed to be forward-looking statements. Without limiting the foregoing, the words "believes," "anticipates," "plans," "expects," "intends," and similar expressions are intended to identify forward-looking statements. There are a number of important factors that could cause the Company's actual results to differ materially from those indicated by such forward-looking statements. These factors are set forth under the caption "Factors That May Affect Results" in the Company's Annual Report on Form 10-K for the year ended December 31, 1997, which "Factors That May Affect Results" discussion is expressly incorporated by reference herein. OVERVIEW Millennium Pharmaceuticals, Inc. ("Millennium" or the "Company"), was incorporated in January 1993 and is applying a comprehensive platform of genomics and related technologies to pursue multiple opportunities in the discovery and development of life-science-based products and services. Most of the Company's activities currently are directed at the field of human healthcare. As used herein, the terms "the Company" and "Millennium" include the Company's subsidiaries where appropriate in the context. RESULTS OF OPERATIONS QUARTERS ENDED JUNE 30, 1998 AND JUNE 30, 1997 Revenue under strategic alliances increased to $28.2 million for the three months ended June 30, 1998 (the "1998 Quarterly Period") from $13.4 million for the three months ended June 30, 1997 (the "1997 Quarterly Period"). The increase in revenue in the 1998 Quarterly Period is due primarily to revenue from research funding and payments for technology transfer under the Company's alliance with Monsanto Company (the "Monsanto alliance"). The Monsanto alliance was entered into in October 1997 and, therefore, was not in place in the 1997 Quarterly Period. Research and development expenses increased to $28.0 million for the 1998 Quarterly Period from $18.3 million for the 1997 Quarterly Period. The increase was attributable primarily to increased personnel expenses as the Company hired additional research and development personnel, increased purchases of laboratory supplies, and increased equipment depreciation and facilities expenses in connection with the expansion of the Company's research efforts. General and administrative expenses increased to $5.9 million for the 1998 Quarterly Period from $4.5 million for the 1997 Quarterly Period. The increase was attributable primarily to increased personnel expenses as the Company hired additional management, business 7 8 development and administrative personnel, and to professional fees in connection with the further expansion of the Company's operations. The Company's total operating expenses increased to $34.6 million for the 1998 Quarterly Period from $23.5 million for the 1997 Quarterly Period. Interest income was $1.3 million for the 1998 Quarterly Period and $1.0 million for the 1997 Quarterly Period. The increase resulted from an increase in the Company's average balance of cash, cash equivalents and marketable securities. Interest expense increased to $.5 million for the 1998 Quarterly Period from $.3 million for the 1997 Quarterly Period due to increased capital lease obligations. Minority interest represents the minority shareholder interest of Eli Lilly and Company ("Lilly") in the net loss for the 1998 Quarterly Period of the Company's majority-owned subsidiary, Millennium BioTherapeutics, Inc. ("MBio"). SIX MONTHS ENDED JUNE 30, 1998 AND JUNE 30, 1997 Revenue under strategic alliances increased to $49.3 million for the six months ended June 30, 1998 (the "1998 Six Month Period") from $24.3 million for the six months ended June 30, 1997 (the "1997 Six Month Period"). The increase is due primarily to revenue from research funding and the achievement of mutually agreed upon technology transfer objectives relating to the Monsanto alliance which was not in place during the 1997 Six Month Period. In addition, revenue relating to MBio's alliance with Lilly during the 1998 Six Month Period increased compared to the 1997 Six Month Period. The increase in revenues under the alliance with Lilly is primarily due to the fact that the research program with Lilly commenced late in the 1997 Six Month Period. Research and development expenses increased to $50.5 million for the 1998 Six Month Period from $29.9 million for the 1997 Six Month Period. The increase was attributable primarily to increased personnel expenses as the Company hired additional research and development personnel, increased purchases of laboratory supplies, and increased equipment depreciation and facilities expenses in connection with the expansion of the Company's research efforts. General and administrative expenses increased to $11.8 million for the 1998 Six Month Period from $7.9 million for the 1997 Six Month Period. The increase was attributable primarily to increased personnel expenses as the Company hired additional management, business development and administrative personnel, and to professional fees in connection with the further expansion of the Company's operations. The Company's total operating expenses decreased to $63.7 million for the 1998 Six Month Period from $122.6 million for the 1997 Six Month Period. The decrease is primarily attributable to a one-time charge of $83.8 million in the 1997 Six Month Period for acquired in-process research and development associated with the Company's acquisition of ChemGenics Pharmaceuticals, Inc. 8 9 Interest income was $2.8 million for the 1998 Six Month Period compared to $2.1 million for the 1997 Six Month Period. The increase resulted from an increase in the Company's average balance of cash, cash equivalents and marketable securities. Interest expense increased to $1.1 million for the 1998 Six Month Period from $.6 million for the 1997 Six Month Period due to increased capital lease obligations. Minority interest represents the minority shareholder interest of Lilly in the net loss for the 1998 Six Month Period of the Company's majority owned subsidiary, MBio. LIQUIDITY AND CAPITAL RESOURCES Since inception, the Company has recognized approximately $201.8 million of revenue under strategic alliances. As of June 30, 1998, the Company had approximately $74.6 million in cash, cash equivalents and marketable securities. This excludes $9.8 million of marketable securities classified as restricted cash and other assets on the balance sheet which serve as collateral for the Company's letters of credit. During the six months ended June 30, 1998, the Company used $17.9 million of cash in its operations, purchased $3.0 million of property and equipment and used cash of $3.2 million to pay capital lease obligations. In addition, during the six months ended June 30, 1998, the Company acquired equipment under capital leases of $5.4 million. The Company believes that existing cash and marketable securities and anticipated cash payments from its strategic alliances will be sufficient to support the Company's operations for the next twelve months. IMPACT OF YEAR 2000 Based on a recent assessment, the Company determined that it will not be required to modify or replace significant portions of its software so that its computer systems will function properly with respect to dates in the year 2000 and thereafter. The Company's systems are based upon technology acquired in the last few years. Therefore, the Company presently believes that no significant modifications to existing software are needed based on presently available information. 9 10 PART II - OTHER INFORMATION ITEM 4. SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS The Company's 1998 Annual Meeting of Stockholders was held on June 2, 1998 (the "Annual Meeting"). At the Annual Meeting, Eugene Cordes, Raju Kucherlapati and Eric S. Lander were elected as Class II Directors for a three year term. The other directors whose terms of office as a director continue after the meeting are as follows: Mark J. Levin, Joshua Boger, A. Grant Heidrich and William W. Helman. The following is a summary of each matter voted at the meeting and the number of votes cast for, against or withheld, and abstentions, as to each such matter: 1. To elect three Class II Directors for the ensuing three years. For: 22,948,522 Withheld: 15,020 2. To ratify the selection by the Board of Directors of Ernst & Young LLP as the Company's independent auditors for 1998. For: 22,943,092 Against: 10,850 Abstain: 9,600 10 11 Item 6. EXHIBITS AND REPORTS ON FORM 8-K. (a) Exhibits The exhibits listed in the Exhibit Index are included in this report. (b) Reports on Form 8-K None. 11 12 SIGNATURES Pursuant to the requirements of the Securities Exchange Act of 1934, the registrant has duly caused this report to be signed on its behalf by the undersigned thereunto duly authorized. MILLENNIUM PHARMACEUTICALS, INC. (Registrant) Date: August 12, 1998 By: /s/ Janet C. Bush ---------------------------------- Janet C. Bush Vice President, Finance (Principal Financial Officer) Date: August 12, 1998 By: /s/ William J. Curry ---------------------------------- William J. Curry Controller (Principal Accounting Officer) 12 13 EXHIBIT INDEX The following exhibits are filed as part of this Quarterly Report on Form 10-Q: Exhibit No. Description - ------- ----------- 10.1 Lease dated June 12, 1998 by and between the Company and 270 Albany Street Realty Trust. 10.2 Lease dated June 17, 1998 by and between the Company and Transamerica Business Credit Corporation. 27.1 Financial Data Schedule for the quarter ended June 30, 1998 27.2 Restated Financial Data Schedule for the quarter ended June 30, 1997 99.1 Pages 44 through 58 of the Company's Annual Report of Form 10-K for the year ended December 31, 1997, as filed with the Securities Exchange Commission (which are deemed filed except to the extent that portions are not expressly incorporated by reference herein). 13