EXHIBIT 32.2 CERTIFICATION I, Michael R. Kramer, Senior Director of Finance of ATS Medical, Inc. (the "Company"), certify, pursuant to Section 906 of the Sarbanes-Oxley Act of 2002, 18 U.S.C. Section 1350, that: The Quarterly Report on Form 10-Q of the Company for the quarter ended September 30, 2006 (the "Report") fully complies with the requirements of Section 13(a) of the Securities and Exchange Act of 1934 (15 U.S.C. 78m); and The information contained in the Report fairly presents, in all material respects, the financial condition and results of operations of the Company. Date: November 8, 2006 /s/ Michael R. Kramer - ------------------------------------- Name: Michael R. Kramer Title: Senior Director of Finance 33