EXHIBIT 16.1 [LETTERHEAD OF ARTHUR ANDERSEN LLP] Office of the Chief Accountant Securities and Exchange Commission 450 Fifth Street, N.W. Washington, D.C. 20549 March 28, 2001 Dear Sir/Madam: We have read the first three paragraphs of Item 4 included in the Form 8-K/A dated March 28, 2001 of Thoratec Corporation to be filed with the Securities and Exchange Commission and are in agreement with the statements contained therein. Very truly yours, /s/ Arthur Andersen LLP