UNITED STATES
                     SECURITIES AND EXCHANGE
                           COMMISSION
                     Washington, D.C. 20549
                    ------------------------

                            FORM 11-K
                     -----------------------


(Mark One)
[ X ]     Annual Report Pursuant to Section 15(d) of the
Securities Exchange Act of 1934

          For the fiscal year ended September 30, 2003

                               OR

[  ] Transition Report Pursuant to Section 15(d) of the
Securities Exchange Act of 1934

 For the transition period from ____________ to ________________

          Commission File Number _____________________

A.   Full title of the plan and the address of the plan, if
     different from that of the issuer named below:

PATRIOT TRANSPORTATION HOLDING, INC. PROFIT SHARING AND DEFERRED
                          EARNINGS PLAN

B.   Name of issuer of the securities held pursuant to the plan
     and the address of its principal executive office:

              Patriot Transportation Holding, Inc.
                      1801 Art Museum Drive
                   Jacksonville, Florida 32207

- -----------------------------------------------------------------




Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan Index
December 31, 2003 and 2002
- -----------------------------------------------------------------


                                                            Page(s)

REPORT OF INDEPENDENT REGISTERED CERTIFIED PUBLIC
 ACCOUNTING FIRM                                               1


FINANCIAL STATEMENTS

Statements of Net Assets Available for Benefits                2

Statement of Changes in Net Assets Available for Benefits      3

Notes to Financial Statements                                  4-8

SUPPLMENTAL SCHEDULE

Schedule H Line 4i Schedule of Assets Held for Investment
  Purposes                                                     9

Note: Other schedules required by 29 CFR 2520.103-10  of  the
Department of Labor's Rules and Regulations for Reporting and
Disclosure under ERISA have been omitted because they are not
applicable, or are not required for participant directed
investment transactions.




  Report of Independent Registered Certified Public Accountants

To the Participants and Administrator of
Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan:

In  our  opinion,  the  accompanying  statements  of  net  assets
available for benefits and the related
statements  of  changes  in  net assets  available  for  benefits
present  fairly,  in  all  material  respects,  the  net   assets
available  for  benefits of Patriot Transportation Holding,  Inc.
Profit  Sharing  and  Deferred  Earnings  Plan  (the  "Plan")  at
December  31,  2003  and  2002, and the  changes  in  net  assets
available  for benefits for the year ended December 31,  2003  in
conformity with accounting principles generally accepted  in  the
United  States  of  America. These financial statements  are  the
responsibility of the Plan's management. Our responsibility is to
express  an  opinion on these financial statements based  on  our
audits. We conducted our audits of these statements in accordance
with  the  standards  of the Public Company Accounting  Oversight
Board  (United States). Those standards require that we plan  and
perform  the  audit to obtain reasonable assurance about  whether
the  financial  statements are free of material misstatement.  An
audit  includes  examining, on a test basis, evidence  supporting
the   amounts   and  disclosures  in  the  financial  statements,
assessing   the   accounting  principles  used  and   significant
estimates   made  by  management,  and  evaluating  the   overall
financial  statement  presentation. We believe  that  our  audits
provide a reasonable basis for our opinion.

Our  audits were conducted for the purpose of forming an  opinion
on   the  basic  financial  statements  taken  as  a  whole.  The
supplemental schedule of Assets Held for Investment  Purposes  is
presented  for the purpose of additional analysis and  is  not  a
required   part  of  the  basic  financial  statements   but   is
supplementary information required by the Department  of  Labor's
Rules  and  Regulations for Reporting and  Disclosure  under  the
Employee   Retirement  Income  Security   Act   of   1974.   This
supplemental  schedule  is  the  responsibility  of  the   Plan's
management. The supplemental schedule has been subjected  to  the
auditing  procedures applied in the audits of the basic financial
statements and, in our opinion, is fairly stated in all  material
respects in relation to the basic financial statements taken as a
whole.

Jacksonville, FL
December 30, 2004, except for footnote 9,
on which the date is April 4, 2005.





Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan
Statements of Net Assets Available for Benefits
December 31, 2003 and 2002
- ------------------------------------------------


                                     2003           2002

ASSETS
Investments at fair value            $  18,172,599  $ 15,721,830
                                     -------------  ------------

Contributions receivable
 Employer                                   11,819        56,634
 Employee                                   27,351       128,249
                                           -------      --------
   Total contributions receivable           39,170       184,883
                                           -------      --------
   Total assets                         18,211,769    15,906,713
                                        ----------    ----------
LIABILITIES
Excess contributions payable                 3,321             -
                                            ------        ------
   Total liabilities                         3,321             -
                                            ------        ------
   Net assets available for benefits   $18,208,448   $15,906,713
                                       -----------   -----------




Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan
Statement of Changes in Net Assets Available for Benefits
Year Ended December 31, 2003
- ---------------------------------------------------------

Investment income
 Dividend and interest income                      $     179,274
 Net appreciation in fair value of investments         1,852,692
                                                   -------------
    Total investment income                            2,031,966
                                                   -------------

Contributions
 Employer                                          $     593,195
 Employee                                              1,374,986
 Rollovers                                                70,397
                                                   -------------
    Total contributions                                2,038,578
                                                   -------------
    Total additions                                    4,070,544
                                                   -------------

Deductions from net assets attributed to
 Distributions to participants                         1,768,809
                                                   -------------
    Total deductions                                   1,768,809
                                                   -------------
    Net increase                                       2,301,735

Net assets available for benefits
 Beginning of year                                    15,906,713
                                                   -------------
 End of year                                         $18,208,448
                                                   -------------





Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan
Notes to Financial Statements
December 31, 2003 and 2002
- -------------------------------------------


1.   Description of the Plan

     The following description of Patriot Transportation Holding,
     Inc.  and  Subsidiaries (the "Company") Profit  Sharing  and
     Deferred  Earnings Plan (the "Plan") provides  only  general
     information.   Participants  should  refer   to   the   Plan
     agreement  for  a more complete description  of  the  Plan's
     provisions.

     General
     The  Plan  is a defined contribution plan available  to  all
     employees  of  the  Company. The  Plan  is  subject  to  the
     provisions of the Employee Retirement Income Security Act of
     1974 (ERISA).

     Contributions
     Each  year, participants may contribute up to 100% of pretax
     annual  compensation, as defined in the Plan.   Participants
     may  also contribute amounts representing distributions from
     other  qualified  defined  benefit or  defined  contribution
     plans,  conduit  IRA accounts, 403(b) accounts,  and  457(b)
     plans.   The Company contributes 50% of the first 6% of  the
     participant's deferred earnings contributions.  The  Company
     may  make a discretionary contribution to the Plan each year
     in  an  amount determined by the Board of Directors  of  the
     Company  subject  to  certain limitations  relating  to  the
     aggregate  compensation  of participants.  No  discretionary
     contributions  were made by the Company for  the  2003  Plan
     year.

     Participant Accounts
     Each   participant's   account   is   credited   with    the
     participant's  contributions  and  the  employer's  matching
     contribution   and   an   allocation   of   the   employer's
     discretionary contributions and Plan earnings.  The  benefit
     to  which a participant is entitled is the benefit  that  is
     available in the participant's vested account.

     Participants  direct  the investment of their  contributions
     into  various  investment options offered by the  Plan.  The
     Plan  currently  offers a money market fund,  mutual  funds,
     Company  stock  and Florida Rock Industries, Inc.  stock  as
     investment  options for participants.  All participants  who
     have not made an election are deemed to have elected to have
     contributions  made to their accounts invested  in  the  STI
     Classic Prime Quality Money Market Fund.

     Vesting
     Participants   are   fully   vested   in   their   voluntary
     contributions plus actual earnings thereon.  Vesting in  the
     Company's  matching  and  discretionary  contributions  plus
     actual  earnings




     thereon is determined under  the  following schedules  based
     on years of service. If  participants  are employed  on  or
     after their retirement age,  the  company's matching  and
     discretionary contributions are fully  vested. In   the event
     of termination  by  retirement,  death  or disability   of the
     participant,  100%  of  the   employer contributions will be
     distributed to the participant or  the participant's designated
     beneficiary.

                         Matching Contributions
             --------------------------------------------------

          Years of Service                   Vested Percentage
                1                                    20%
                2                                    40%
                3                                    60%
                4                                    80%
                5                                   100%


                         Discretionary Contribution
             --------------------------------------------------

          Years of Service                   Vested Percentage
          Less than 3                                 0%
               3                                     20%
               4                                     40%
               5                                     60%
               6                                     80%
               7                                    100%


     Payment of Benefits
     On  termination  of  employment, death or  disability  of  a
     participant,  benefits for distribution shall be  determined
     on  the date of distribution, which shall be made as soon as
     administratively  feasible or later if  so  elected  by  the
     participant in amounts as provided in the Plan.

     Forfeited Accounts
     The  nonvested portion of a terminated participant's account
     shall   be  allocated  to  the  accounts  of  the  remaining
     participants  in the same manner as employer  contributions.
     Any  forfeiture from an employer discretionary account shall
     be  allocated  in  the  plan year in  which  the  forfeiture
     occurs.   Any  forfeiture from an employer matching  account
     shall be reallocated in the immediately following plan year.
     Unallocated  forfeitures  totaled  $83,957  and  $72,834  at
     December 31, 2003 and December 31, 2002, respectively.






     Participant Loans
     Participants may borrow from their fund accounts  a  minimum
     of  $1,000  and a maximum equal to the lesser of $50,000  or
     50%  of  their  vested account balance.  A  loan  must  bear
     interest  at the prevailing rate used by commercial  lending
     institutions.    Participants  may  have  only   two   loans
     outstanding at any time.  Loans must be secured  by  50%  of
     the participant's vested account balance in the Plan and  no
     other  collateral may be pledged.  Loans are required to  be
     repaid within five years except residential loans, which are
     payable  within 15 years.  Loan repayment will  be  deducted
     from  the  participant's payroll over the term of the  loan.
     Upon  termination  of  employment  with  the  Company,   the
     outstanding balance of the loan, including accrued interest,
     is due immediately.

2.   Summary of Significant Accounting Policies

     Basis of Accounting
     The  financial statements of the Plan are prepared under the
     accrual  method of accounting in conformity with  accounting
     principles  generally  accepted  in  the  United  States  of
     America.

     Investments
     Investments  in money market funds and the common  stock  of
     the Company and Florida Rock Industries, Inc. are stated  at
     fair value based upon quoted market prices.  Investments  in
     mutual  funds  are  stated at net asset value.   Participant
     loans  are  valued  at  their  outstanding  balances,  which
     approximate fair value.  The Plan presents in the  statement
     of  changes  in  net assets available for benefits  the  net
     appreciation  or  depreciation in fair value  of  investment
     which  consists  of  the realized gains or  losses  and  the
     unrealized   appreciation   or   depreciation    on    these
     investments.

     Purchases and sales of securities are recorded on  a  trade-
     date  basis.   Interest income is recorded  on  the  accrual
     basis when it is earned. Dividends are recorded on the basis
     of  the ex-dividend date. Loans to participants are recorded
     at  the  unpaid balance of the individual loans as  of  year
     end.

     Use of Estimates
     The  preparation of financial statements in conformity  with
     accounting  principles  generally  accepted  in  the  United
     States  of  America requires management to make  significant
     estimates  and assumptions that affect the reported  amounts
     of   assets   and  liabilities  and  changes  therein,   and
     disclosure  of  contingent assets  and  liabilities.  Actual
     results could differ from those estimates.

     Benefit Payments
     Benefits are recorded when paid.

     Risks and Uncertainties
     The  Plan  provides for various investment  options  in  any
     combination  of  mutual  funds.  Investment  securities  are
     exposed to various risks, such as interest rate, market  and
     credit.   Due  to the level of risk associated with  certain
     investment  securities and the level of




     uncertainty  related to  changes in the value of investment
     securities, it is  at least reasonably possible that changes
     in risks in the  near term  would materially affect participants'
     account balances and the amounts reported in the statement of net
     assets available for benefits and the statement of changes  in
     net assets available for benefits.

3.   Investments

     Investments  which  exceeded 5% or more of  the  Plan's  net
     assets at December 31 are summarized as follows:

                                                    2003        2002
     Investments at fair value as determined
     By quoted market price
     STI Classic Prime Quality Money Market Fund   $6,576,041  $6,516,364
     STI Classic Capital Appreciation Fund          3,628,096   3,434,388
     Vanguard 500 Index Fund                        2,027,324   1,338,442
     Participant loans                              1,127,833   1,111,191
     Florida Rock Industries Common Stock             979,341          --

     During  2003,  the Plan's investments (including  gains  and
     losses  on  investments bought and sold,  as  well  as  held
     during  the  year)  appreciated in value, as  determined  by
     quoted market prices, as follows:

     Mutual funds                                   $1,458,495
     Common Stock                                      394,197
                                                    ----------
      Net appreciation in fair value of investments $1,852,692
                                                    ----------

4.   Related Party Transactions

     Funds  managed  by the custodian and loans  to  participants
     comprise  the  entire  investment  portfolio.  Fees  to  the
     custodian  are deducted from investment income.   Therefore,
     all  investment  transactions  are  considered  to  be  with
     parties-in-interest.   Certain administrative  expenses  are
     paid  for  by the Company without charge to the Plan,  which
     amounted  to $19,779 for the year ended December  31,  2003,
     and are not included in these financial statements.

5.   Plan Termination

     While the Company has not expressed any intent to do so,  it
     may  terminate the Plan at any time.  In the event  of  such
     termination,  the accounts of all participants would  become
     fully  vested  and  the Company, by written  notice  to  the
     Trustee  and  the  Committee,  may  direct  either  complete
     distribution  of  the  assets  in  the  Trust  Fund  to  the
     participants or, continue the Trust and the distribution  of
     benefits at such time and in such manner as though the  Plan
     had not been terminated.




6.   Income Tax Status

     The  Plan  obtained determination letters on April 29,  1996
     and  May  14,  2004, in which the Internal  Revenue  Service
     stated  that  the Plan, as then designed, was in  compliance
     with  the  applicable requirements of the  Internal  Revenue
     Code  ("IRC").  The Plan administrator and  the  Plan's  tax
     counsel  believe  that  the Plan is currently  designed  and
     being   operated   in   compliance   with   the   applicable
     requirements of the IRC.

7.   Financial Instruments

     Certain  financial instruments potentially subject the  Plan
     to   concentrations   of  credit  risk.    These   financial
     instruments  consist  of the SunTrust  investment  accounts,
     Company  stock,  Florida  Rock Industries,  Inc.  stock  and
     contributions receivable. The Plan limits its credit risk by
     maintaining  its  accounts with what the plan  administrator
     believes to be high quality financial institutions.

8.   Reconciliation of Financial Statements to Form 5500

     The  following  is a reconciliation of net assets  available
     for  benefits  per the financial statements at December  31,
     2003 to Form 5500:

     Net assets available for benefits per the
       financial statements                           $18,208,448
     Excess contribution payable                            3,321
                                                      -----------
     Net assets available for benefits per the
       Form  5500                                     $18,211,769
                                                      -----------

     The  following is a reconciliation of contributions per  the
     financial statements for the year ended December 31, 2003 to
     the Form 5500:

     Total contributions per the financial statements  $2,038,578
     Excess contribution payable                            3,321
                                                       ----------
     Total contributions per the Form 5500             $2,041,899
                                                       ----------

9.   Registration of Plan Sponsor Shares

     On May 20, 2005, the Company registered 20,000 shares of
     its common stock on Form S-8.

     Legal counsel has advised the Company that it is subject  to
     claims  for  rescission of acquisitions  of  shares  of  the
     Company's  common stock occurring prior to May 20, 2005,
     during the one year period following the date of acquisition
     of  the  shares  (the  statute of  limitations  period  that
     applies  to  claims for rescission), due to the  failure  to
     register the shares in accordance with applicable securities
     law.   Approximately  1,918 shares of the  Company's  common
     stock were transferred to Plan participants during the  Plan
     year  ended December 31, 2004 and, if rescinded, would  have
     an aggregate




     repurchase price of approximately $68,000, plus interest. The
     Plan  Sponsor may  also  face  penalties  in connection with
     these matters and could be subject to claims for  rescission
     for  acquisitions  prior  to  the  one-year statute  of
     limitations.   The  Participants'  rights  with respect  to
     rescission  have been disclosed  in  a  Current Report  on
     Form  8-K filed by the Company on  December  14, 2004.



Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan
Schedule H Line 4i - Schedule of Assets Held for Investment Purposes
December 31, 2003
- -----------------------------------------------------------------



                                       Description of investment          Current
   Identity of issue,                  including maturity date,           Value
   borrower, lessor or                 rate of interest, collatral,
   similar party                       par or maturity value

<s>                                    <c>                                <c>
*STI Classic Prime Quality Money
   Market TSU-PMM                      Money Market Fund                  $6,576,041
*STI Classic Capital Appreciation
   Fund, TSU-CG                        Equity Fund                         3,628,096
   Vanguard 500 Index Fund             Equity Fund                         2,027,324
   Longleaf Partners Fund              Equity Fund                           865,246
*Florida Rock Industries, Inc.         Common Stock                          979,341
 T.Rowe Price US Treasury Intermediate Bond Fund                             514,477
*Patriot Transportation Holding, Inc.  Common Stock                          472,468
*Aggressive Option                     Balanced Fund                         431,039
*Moderate Option                       Balanced Fund                         421,913
 T. Rowe Price New Horizon             Equity Fund                           408,792
 Chase Growth Fund                     Equity Fund                           274,900
 Conservative Option                   Balanced Fund                         194,545
 T. Rowe Price Capital Appreciation    Bond Fund                             153,063
 T. Rowe Price Equity Income Fund      Equity Fund                            79,403
 MFS Research Bond fund                Bond Fund                               7,058
 Fidelity Advisor Inflation Protected
   Bond                                Bond Fund                               5,908
 Templeton Foreign Fund                Equity Fund                             5,152
                                                                           _________
                                                                          17,044,766

 Participant  Loans         Participant loans with interest rates
                              Ranging from 4.0% to 10.5%                   1,127,833
                                                                          ----------
                                                                         $18,172,599
                                                                         -----------

</table>


* Party-In-Interest as defined by ERISA.

Information certified as complete and accurate by SunTrust Bank,N.A.




                            SIGNATURE

The  Plan.    Pursuant  to  the requirements  of  the  Securities
Exchange  Act  of  1934,  the  trustees  (or  other  persons  who
administer  the  employee benefit plan)  have  duly  caused  this
annual  report  to  be  signed by the undersigned  hereunto  duly
authorized.

                              PATRIOT  TRANSPORTATION  HOLDING, INC.,
                              PROFIT SHARING AND DEFERRED
                              EARNINGS PLAN


                              By: /s/ Ray M. Van Landingham
                                  --------------------------------
                                  Ray M. Van Landingham
                                  Vice President, Chief Financial
                                  Officer, and Secretary of Patriot
                                  Transportation Holding, Inc.
                                  (Principal Financial Officer)

Date: May 24, 2005






 Consent of Independent Registered Certified Public Accountants


We  hereby  consent  to the incorporation  by  reference  in  the
Registration Statement on Form S-8 (No. 333-125099) of Patriot
Transportation  Holding, Inc. of our report  dated  December  30,
2004,  except for footnote 9, on which the date is April 4,  2005
relating   to   the   financial   statements   of   the   Patriot
Transportation Holding, Inc. Profit Sharing and Deferred Earnings
Plan, which appears in this Form 11-K.

PricewaterhouseCoopers LLP

Jacksonville, Florida
May 23, 2005