UNITED STATES
                     SECURITIES AND EXCHANGE
                           COMMISSION
                     Washington, D.C. 20549
                    ------------------------

                            FORM 11-K
                     -----------------------


(Mark One)
[ X ]     Annual Report Pursuant to Section 15(d) of the
Securities Exchange Act of 1934

           For the fiscal year ended December 31, 2006

                               OR

[  ] Transition Report Pursuant to Section 15(d) of the
Securities Exchange Act of 1934

 For the transition period from ____________ to ________________

                 Commission File Number 33-26115

A.   Full title of the plan and the address of the plan, if
     different from that of the issuer named below:

PATRIOT TRANSPORTATION HOLDING, INC. PROFIT SHARING AND DEFERRED
                          EARNINGS PLAN

B.   Name of issuer of the securities held pursuant to the plan
     and the address of its principal executive office:

              Patriot Transportation Holding, Inc.
                      1801 Art Museum Drive
                   Jacksonville, Florida 32207

- -----------------------------------------------------------------




     Patriot Transportation Holding, Inc.

Profit Sharing and Deferred Earnings Plan


Index

Page(s)

Reports of Independent  Registered Certified Public Accounting firms..2-3

Financial Statements
Statements of Net Assets Available for Benefits
December 31, 2006 and 2005............................................4

Statement of Changes in Net Assets Available for Benefits
Year Ended December 31, 2006..........................................5

Notes to Financial Statements.......................................6-10

Supplemental Schedule

Schedule H, Line 4i - Schedule of Assets (Held at End of Year)
December 31, 2006 ...................................................11

Note:      Other  schedules required by 29 CFR 2520.103-10  of  the
Department of Labor's Rules and Regulations for Reporting
and  Disclosure under ERISA have been omitted because they are  not
applicable, or are not required for participant directed
investment transactions.




Report of Independent Registered Certified Public Accounting Firm

To the Participants and Administrator of
Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan

We have audited the accompanying statement of net assets available
for  benefits of the Patriot Transportation Holding,  Inc.  Profit
Sharing  and Deferred Earnings Plan (the Plan) as of December  31,
2006, and the related statement of changes in net assets available
for benefits for the year ended December 31, 2006. These financial
statements  are  the responsibility of the Plan's management.  Our
responsibility  is  to  express  an  opinion  on  these  financial
statements based on our audit.

We  conducted  our audit in accordance with the standards  of  the
Public  Company Accounting Oversight Board (United States).  Those
standards  require that we plan and perform the  audit  to  obtain
reasonable  assurance about whether the financial  statements  are
free of material misstatement.  We were not engaged to perform  an
audit  of  the  Plan's internal control over financial  reporting.
Our   audit  included  consideration  of  internal  control   over
financial reporting as a basis of designing audit procedures  that
are  appropriate in the circumstances, but not for  expressing  an
opinion  on the effectiveness of the Plan's internal control  over
financial reporting.  Accordingly, we express no such opinion.  An
audit includes examining, on a test basis, evidence supporting the
amounts and disclosures in the financial statements. An audit also
includes  assessing the accounting principles used and significant
estimates  made by management, as well as evaluating  the  overall
financial  statement  presentation.  We  believe  that  our  audit
provides a reasonable basis for our opinion.

In our opinion, the financial statements referred to above present
fairly,  in  all material respects, the net assets  available  for
benefits of the Plan at December 31, 2006, and the changes in  net
assets  available  for benefits for the year  ended  December  31,
2006,  in conformity with accounting principles generally accepted
in the United States.

Our  audit was performed for the purpose of forming an opinion  on
the  financial  statements  taken as  a  whole.  The  accompanying
supplemental  schedule  of assets (held at  end  of  year)  as  of
December 31, 2006 is presented for purposes of additional analysis
and  is  not  a required part of the financial statements  but  is
supplementary  information required by the Department  of  Labor's
Rules  and  Regulations  for Reporting and  Disclosure  under  the
Employee Retirement Income Security Act of 1974. This supplemental
schedule  is  the  responsibility of the  Plan's  management.  The
supplemental   schedule  has  been  subjected  to   the   auditing
procedures  applied in our audit of the financial statements  and,
in  our  opinion,  is  fairly stated in all material  respects  in
relation to the financial statements taken as a whole.


/s/ Hancock Askew & Co LLP
_____________________________
Hancock Askew & Co LLP

Savannah, Georgia
June 6, 2007

				2


Report of Independent Certified Public Accountants

To the Participants and Administrator of
Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan

In our opinion, the accompanying statement of net assets available
for benefits presents fairly, in all material respects, the net assets
available for benefits of Patriot Transportation
Holding, Inc. Profit Sharing and Deferred Earnings Plan (the "Plan")
at December 31, 2005 in conformity with accounting principles generally
accepted in the United States of America.  This financial statement is
the responsibility of the Plan's management.  Our responsibility is to
express an opinion on this financial statement based on our audit.
We conducted our audit of this statement in accordance with the
standards of the Public Company Accounting Oversight Board (United States).
Those standards require that we plan and perform the audit to obtain
reasonable assurance about whether the financial statement is free of
material misstatement.  An audit includes examining, on a test basis,
evidence supporting the amounts and disclosures in the financial
statement, assessing the accounting principles used and
significant estimates made by management, and evaluating the overall
financial statement presentation.  We believe that our audit provides a
reasonable basis for our opinion.



/s/ PricewaterhouseCoopers LLP
______________________________
PricewaterhouseCoopers LLP

June 23, 2006
Jacksonville, Florida

				3



Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan
Statements of Net Assets Available for Benefits
December 31, 2006 and 2005
- ------------------------------------------------------------------



				                 
                                       2006            2005
                                       ----            ----
Assets
Investments, at fair value
  Investments                     $ 24,497,728    $ 22,128,560
  Participant loans                  1,363,947       1,194,552
                                    ----------     -----------
     Total investments              25,861,675      23,323,112
                                    ----------     -----------
Contributions receivable
  Employer                              13,504          12,244
  Employee                              31,586          28,673
                                    ----------     -----------
     Total contributions receivable     45,090          40,917
                                    ----------     -----------
     Total assets                   25,906,765      23,364,029
                                    ----------     -----------
Liabilities
Excess contributions payable                 -           6,690
                                    ----------     -----------
     Total liabilities                       -           6,690
                                    ----------     -----------
     Net assets available for
       benefits                   $ 25,906,765    $ 23,357,339
                                   -----------     -----------


				4




Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan
Statement of Changes in Net Assets Available for Benefits
Year Ended December 31, 2006
- ----------------------------------------------------------------





						     
Additions to net assets attributed to
Investment income
  Dividend and interest income                      $    826,257
  Net appreciation in fair value of investments          860,901
  Other income-loan interest                              83,788
                                                     -----------
          Total investment income                      1,770,946
                                                     -----------
Contributions
  Employer                                               793,717
  Employee                                             1,852,662
  Rollovers                                              137,541
                                                     -----------
          Total contributions                          2,783,920
                                                     -----------
          Total additions                              4,554,866
                                                     -----------

Deductions from net assets attributed to
Distributions to participants                          2,005,348
     Administrative expenses                                  92
                                                     -----------
     Total deductions                                  2,005,440
                                                     -----------
     Net increase                                      2,549,426
                                                     -----------
Net assets available for benefits
     Beginning of year                                23,357,339
                                                     -----------
     End of year                                    $ 25,906,765

                                                     -----------



				5





Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan
Notes to Financial Statements
December 31, 2006 and 2005
- ----------------------------------------------------------------


1.  Description of the Plan

The  following  description  of Patriot   Transportation  Holding,
Inc.    (the   "Company")   Profit Sharing and Deferred Earnings Plan
(the "Plan") provides only general information.  Participants  should
refer to the Plan agreement for  a more  complete description of  the
Plan's provisions.


General
The Plan is a defined contribution plan available to all employees of
the Company. The Plan is subject to the provisions  of  the  Employee
Retirement Income Security Act of 1974 (ERISA).


Contributions
Each year, participants may contribute up to 100% of pretaxannual
compensation, as defined in the  Plan. Participants may also contribute
amounts representing distributions from other qualifieddefined benefit,
defined contribution  or  other  qualifiedplans, the Company matches 50%
of the  first 6% of the participant'sdeferred  earnings  contributions.
The Company may make adiscretionary contribution to  the Plan each year
in  an amountdetermined by the Board of Directors of the Company
subjectto certain limitations relating to the aggregate compensation
of participants. No discretionary contributions were made by the Company
for the 2005 or 2006  Plan years.

Participant Accounts
Each   participant's account is credited with the participant's
contributions, the employer's matching contribution, an allocation of
the employer's discretionary contributions and Plan earnings. The benefit
to which a participant is  entitled  is  the benefit that is  available
in the participant's vested account.

Participants direct the investment of their contributions into various
investment options offered  by  the  Plan. The  Plan currently offers a
moneymarket fund, common/collective trust, mutual funds, Company stock
and Florida Rock Industries, Inc. stock  as  investment options for
participants. All participants who have  not  made  an  election  are
deemed to have elected to have contributions made to  their accounts
invested in the SunTrust Retirement Stable Asset Fund.

Vesting
Participants are fully vested in their voluntary contributions plus
actual earnings thereon. If participants are employed on or after
their retirement age, the company's matching and discretionary
contributions are fully vested. In the event of termination by
retirement, death or disability of the participant, 100% of the
employer contributions will be distributed to the participant or
the participant's designated beneficiary.

				6





Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan
Notes to Financial Statements
December 31, 2006 and 2005
- -------------------------------------------------------------------

Vesting (cont.)
Vesting in the Company's matching and discretionary contributions plus
actual earnings thereon is determined under the following schedules
based on years of service.





                   Matching Contributions

	 				
                                           Vested
         Years of Service              Percentage
         Less than 1                           0%
                   1                          20%
                   2                          40%
                   3                          60%
                   4                          80%
                   5                         100%


                  Profit Sharing Contributions

                                           Vested
          Years of Service             Percentage
          Less than 3                          0%
                    3                         20%
                    4                         40%
                    5                         60%
                    6                         80%
                    7                        100%



Payment of Benefits
On termination of employment, death or disability of a participant,
benefits for distribution  shall be  determined based upon the
participant's vested account balance on the date of distribution,
which shall be made  as  soon as administratively feasible or later
if so elected by the participant in amounts as provided in the Plan.

Forfeited Accounts
The   non-vested  portion  of  a  terminated  participant's account
shall be forfeited and reallocated to the accounts of the remaining
participants  in  the  same  manner  as employer  contributions were
originally allocated  to  such participants.  Any forfeiture from an
employer discretionary account shall be allocated in the  plan  year
in  which  the  forfeiture occurs. Any forfeiture  from  an employer
matching account shall  be  reallocated  in  the immediately
following plan.  Unallocated  forfeitures totaled  $195,860 and
$96,896 at December 31, 2006 and 2005, respectively.


Participant Loans
Participants  may borrow from their accounts a  minimum  of $1,000
and a maximum equal to the lesser of $50,000 or 50% of their vested
account balance. Loans bear  interest at the prevailing rate used
by commercial  lending institutions.  Participants may have only two
loans outstanding at any time. Loans are secured by the participant's
remaining  vested  account  balance.   Loans terms  are limited to
five years except residential  loans, which  are payable up to 15 years.
Loan repayment will be deducted from the participant's payroll over the
term  of the  loan. Upon termination of employment with the Company,
the  outstanding  balance  of the loan,  including  accrued interest, is
due immediately.

				7


Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan
Notes to Financial Statements
December 31, 2006 and 2005
- -----------------------------------------------------------------------


2. Summary of Significant Accounting Policies

Basis of Accounting
The financial statements of the Plan are prepared under the accrual
method of accounting in conformity with accounting principles
generally accepted in the United States of America.


Investments Valuation and Income Recognition
Investments in the common stock ofthe Company and of Florida Rock
Industries,  Inc.  are  stated  atfair value based upon quoted
market  prices at year-end.  Unitsor shares of mutual funds and
common/collective    trusts    arevalued at the net asset value of
shares  held by the Plan at  year-end. Loans to participants are
recorded at the unpaid balance  ofthe individual loans as of year-
end, which approximate fair value.

The Plan presents in the statementof changes in net assets available
for  benefits the net appreciationor depreciation in fair value of
investments which consists of  therealized gains or losses and the
unrealized appreciation  or depreciation on these investments.


Purchases and sales of securities are recorded on a trade-date basis.
Interest income is recorded on the accrual basis when it is earned.
Dividends are recorded on the basis of the ex-dividend date.

Use of Estimates
The preparation of financial statements in conformity with accounting
principles generally accepted in the United States of America requires
management to make significant estimates and assumptions that affect the
reported amounts of assets andliabilities  and changes  therein,
and disclosure of contingentassets   and  liabilities.  Actual
results could differ from thoseestimates.


Benefit Payments
Benefits are recorded when paid.


Risks and Uncertainties
The  Plan  provides for investment options in  various investment
securities.  Investment  securities are exposed to risks, such as
interest rate, market  risk and  credit  risk. Due to the level of
risk associated with certain investment securities and the  level  of
uncertainty  related  to  changes  in  the  value   of investment
securities, it is reasonably possible  that changes in risks in the
near term would  materially affect  participants' account balances
and the amounts reported in the statement of net assets available  for
benefits  and the statement of changes in  net  assets available for
benefits.


				8



Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan
Notes to Financial Statements
December 31, 2006 and 2005
- ---------------------------------------------------------------------


3. Investments

Investments which exceeded 5% or more of the Plan's net assets at
December 31 are summarized as follows:

- ---------------------------------------------------------------------


						           
                                                    2006         2005
STI Classic Prime Quality Money Market Fund     $ 7,036,042 $ 6,850,270
Florida Rock Industries Inc. common stock         3,306,107   3,211,967
T. Rowe Price Growth Stock Fund-R                 2,546,424   2,556,906
Vanguard 500 Index Fund                           2,162,239   2,070,631
Patriot Transportation Holding, Inc. common stock 1,409,231      *
Participant loans                                 1,363,947   1,194,552
Longleaf Partners Fund                            1,309,409      *


- -----------------------------------------------------------------------

*Did not represent 5% or more of Plan's net assets at December 31, 2005.

During 2006 the Plan's investments (including gains
and losses on investments bought and sold, as well as
held during the year) appreciated in value as follows:



						
Common Stock                                  $    9,367
Mutual Funds                                     817,466
Common/collective trust                           34,068
                                               ---------
Net appreciation in fair value of investments $  860,901
                                               =========



4. Related Party Transactions

Certain  Plan  investments are managed  by  SunTrust.
SunTrust  is the trustee as defined by the Plan  and,
therefore,  these transactions qualify  as  party-in-
interest  transactions.  Fees  to  the  trustee   are
deducted    from    investment    income.     Certain
administrative expenses are paid for by  the  Company
without charge to the Plan. Such expenses amounted to
$19,880 for the year ended December 31, 2006, and are
not included in these financial statements.

5. Plan Termination

While the Company has not expressed any intent to  do
so, it  may terminate the Plan at any time.  In  the
event  of  such  termination,  the  accounts  of  all
participants  would  become  fully  vested  and   the
Company,  by  written notice to the Trustee  and  the
Committee, may direct either complete distribution of
the  assets in the Trust Fund to the participants or,
continue  the Trust and the distribution of  benefits
at  such  time and in such manner as though the  Plan
had not been terminated.

6. Amendments

The  Plan  was amended to adopt a new Plan  document,
the  Defined Contribution Plan and Trust, a prototype
plan,  sponsored by SunTrust Bank, on  September  18,
2006.  This adoption did not significantly change any
features  of  the  Plan  and  did  not  retroactively
eliminate  any  optional form of benefits  that  were
available under the predecessor plan.

				9




Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan
Notes to Financial Statements
December 31, 2006 and 2005


7. Income Tax Status

The Plan, prior to amendment as discussed in note  6,
obtained its latest determination letter on  May  14,
2004,  in  which the Internal Revenue Service  stated
that  the  Plan, as then designed, was in  compliance
with  the  applicable requirements  of  the  Internal
Revenue Code ("IRC"). The prototype Plan, adopted  by
the  Company subsequent to the amendment as discussed
in  note 6, obtained its latest determination  letter
on  August  26,  2002, in which the Internal  Revenue
Service  stated  that  the  prototype  Plan,  was  in
compliance  with the applicable requirements  of  the
Internal Revenue Code ("IRC"). The Plan administrator
and  the Plan's tax counsel believe that the Plan  is
currently  designed and being operated in  compliance
with the applicable requirements of the IRC.


8. Financial Instruments

Certain financial instruments potentially subject the
Plan to concentrations of credit risk.  These
financial instruments consist of the SunTrust
investment  accounts,  Company  stock,  Florida  Rock
Industries,  Inc. stock and contributions receivable.
The  Plan  limits its credit risk by maintaining  its
accounts with what the plan administrator believes to
be high quality financial institutions.

9. Reconciliation of Financial Statements to Form 5500

The following is a reconciliation of net assets
available for benefits per the financial statements
at December 31, 2005 to Form 5500:




				  
Net assets available for benefits
 per the financial
 statements                      $ 23,357,339
Excess contributions payable            6,690
                                  -----------
Net assets available for benefits
 per the form 5500               $ 23,364,029
                                  -----------



				10




Patriot Transportation Holding, Inc.
Profit Sharing and Deferred Earnings Plan
Schedule H line 4i - Schedule of assets (held at end
of year)
December 31, 2006




			         					
                                 Description of investment
                                 including maturity date,
Identity of issue borrower       rate of interest,                          Current
or similar party                 collateral, par or                         value
                                 maturity date                Cost **
- -----------------------------------------------------------------------------------
*STI Classic Prime Quality Money
  Market TSU-PMM                       Money Market                      $ 7,036,042

*Florida Rock Industries-Common Stock  Common Stock                        3,306,107
*Patriot Transportation Common Stock   Common Stock                        1,409,231

T. Rowe Price Growth Stock Fund-R      Mutual Fund                         2,546,424
Vanguard 500 Index fund                Mutual Fund                         2,162,239
T. Rowe Price Capital Appreciation     Mutual Fund                           808,997
Longleaf Partners Fund                 Mutual Fund                         1,309,409
* STI Classic Life Vision Agg Grth I   Mutual Fund                           683,651
T. Rowe Price New Horizon              Mutual Fund                           788,299
*STI Classic Life Vision Moderate
  Grth I                               Mutual Fund                           688,669
Chase Growth fund                      Mutual Fund                           535,554
T. Rowe Price US Treasury Intermediate Mutual Fund                           244,371
Mainstay Small Cap Opportunity         Mutual Fund                           409,685
Templeton Foreign Fund                 Mutual Fund                           490,641
T. Rowe Price Equity Income Fund A     Mutual Fund                           259,448
*STI Classic Life Vision Conservative
  I                                    Mutual Fund                           169,602
MFS Research Bond Fund - A             Mutual Fund                            96,210
Fidelity Advisor Inflation Protected
  Bond                                 Mutual Fund                            49,772
Federated Mid Cap Index IS             Mutual Fund                           317,146

*SunTrust Retirement Stable Asset Fund Common/Collective Trust             1,186,231
                                                                           ---------
                                                                        $ 24,497,728

*Participant loans                     Loans with interest ranging         1,363,947
                                       from 4.0% to 10.5%           -0-  -----------

                                                                        $ 25,861,675
                                                                         -----------
* Party-in-interest as defined by ERISA

** Cost not required for participant-directed investments


				11



                           SIGNATURES

               The  Plan.    Pursuant to the requirements
               of the Securities Exchange Act of 1934, the
               trustees (or other persons who administer the
               employee benefit plan) have  duly  caused this
               annual report  to  be  signed by the undersigned
               hereunto  duly authorized.

                            PATRIOT TRANSPORTATION HOLDING, INC.,
                            PROFIT SHARING AND DEFERRED EARNINGS PLAN


                            By: /s/ Ray M. Van Landingham
                            ------------------------------
                            Ray M. Van Landingham
                            Vice President, Chief Financial
                            Officer, and Secretary
                            of Patriot Transportation Holding, Inc.
                            (Principal Financial Officer)

				12



                   EXHIBIT 23.1


CONSENT OF INDEPENDENT REGISTERED PUBLIC ACCOUNTING FIRM


We  consent  to  the  incorporation by  reference  in  the
Registration Statement (Form S-8 No. 333-62676) pertaining
to the Patriot Transportation Holding, Inc. Profit Sharing
and  Deferred  Earnings Plan of our report dated  June  6,
2007,  with  respect  to  the  financial  statements   and
supplemental   schedule  of  the  Patriot   Transportation
Holding,  Inc.  Profit Sharing and Deferred Earnings  Plan
included  in this Annual Report (Form 11-K) for  the  year
ended December 31, 2006.

/s/  Hancock Askew & Co LLP
__________________________
Hancock Askew & Co LLP

June 26, 2007


				13



                       EXHIBIT 23.1


    Consent of Independent Registered Certified Public
                      Accounting Firm


We hereby consent to the incorporation by reference in the
Registration  Statement on Form S-8  (No.  333-125099)  of
Patriot  Transportation Holding, Inc. of our report  dated
June  23,  2006  relating to the financial  statements  of
Patriot  Transportation Holding, Inc. Profit  Sharing  and
Deferred Earnings Plan, which appears in this Form 11-K.

/s/ Pricewaterhousecoopers LLP
_________________________________
PricewaterhouseCoopers LLP

Jacksonville, Florida
June 26, 2007


				14