- -------------------------------------------------------------------------------- SECURITIES AND EXCHANGE COMMISSION WASHINGTON, D.C. 20549 FORM 10-Q X QUARTERLY REPORT UNDER SECTION 13 OR 15(D) OF THE SECURITIES EXCHANGE ACT OF 1934 FOR THE PERIOD ENDED JUNE 30, 1999 OR __ TRANSITION REPORT PURSUANT TO SECTION 13 OR 15 (D) OF THE SECURITIES EXCHANGE ACT OF 1934 COMMISSION FILE NUMBER 0-21379 CUBIST PHARMACEUTICALS, INC. (Exact name of registrant as specified in its charter) DELAWARE 22-3192085 (State or other jurisdiction of (I.R.S. Employer incorporation or organization) Identification No.) 24 EMILY STREET CAMBRIDGE, MASSACHUSETTS 02139 (Address of principal executive offices) (617) 576-1999 (Registrant's telephone number, including area code) NONE (Former name, former address and former fiscal year, if changed since last report) Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days. Yes X No -- -- As of August 12, 1999, there were 17,569,657 shares outstanding of Cubist's common stock, $0.001 par value per share. - -------------------------------------------------------------------------------- CUBIST PHARMACEUTICALS, INC. INDEX ITEM PAGE NUMBER NUMBER - ------ ------ PART I. FINANCIAL INFORMATION Item 1. Condensed Unaudited Financial Statements Condensed Balance Sheets as of June 30, 1999 and December 31, 1998............................................................... 3 Condensed Statements of Operations for the three months ended June 30, 1999 and 1998 and for the six months ended June 30, 1999 and 1998........................ 4 Condensed Statements of Cash Flows for the six months ended June 30, 1999 and 1998.............................................................. 5 Notes to the Unaudited Condensed Financial Statements............................... 6 Item 2. Management's Discussion and Analysis of Financial Condition and Results of Operations............................................................... 7 Item 3. Quantitative and Qualitative Disclosures About Market Risk.............................. 11 PART II. OTHER INFORMATION Item 2. Changes in Securities and Use of Proceeds............................................... 11 Item 4. Submission of Matters to a Vote of Security Holders..................................... 11 Item 6. Exhibits and Reports on Form 8-K........................................................ 12 SIGNATURE............................................................................... 12 2 PART I -- FINANCIAL INFORMATION ITEM 1. CONDENSED FINANCIAL STATEMENTS CUBIST PHARMACEUTICALS, INC. CONDENSED BALANCE SHEETS JUNE 30, 1999 DECEMBER 31, 1998 ----------------- ---------------- (unaudited) ASSETS Current Assets: Cash and cash equivalents......................................... $8,423,702 $6,463,688 Short-term investments............................................ 3,341,248 8,692,514 Accounts receivable .............................................. 50,018 -- Prepaid expenses and other current assets......................... 648,285 231,409 ----------------- ---------------- Total current assets.............................................. 12,463,253 15,387,611 Property and equipment ................................................ 8,009,927 7,727,821 Less: Accumulated depreciation and amortization.................. (4,514,364) (3,908,054) ----------------- ---------------- Property and equipment, net ...................................... 3,495,563 3,819,767 Long-term investments.................................................. 3,827,761 3,855,336 Other assets .......................................................... 57,801 74,238 ----------------- ---------------- Total assets............................................. $19,844,378 $23,136,952 ----------------- ---------------- ----------------- ---------------- LIABILITIES AND STOCKHOLDERS' EQUITY Current Liabilities: Accounts payable.................................................. $448,076 $460,939 Accrued expenses.................................................. 1,613,924 572,562 Current portion of long-term debt................................. 58,806 83,957 Current portion of capital lease obligations ..................... 544,481 625,450 ----------------- ---------------- Total current liabilities .............................. 2,665,287 1,742,908 Long-term debt, net of current portion................................. 787,694 16,109 Long-term capital lease obligation, net of current portion............. 1,042,876 1,292,165 ----------------- ---------------- Total liabilities........................................ 4,495,857 3,051,182 ----------------- ---------------- Commitments Stockholders' Equity: Common Stock - $.001 par value; authorized: 50,000,000 shares; Issued and outstanding 1998 16,642,968 shares; Issued and outstanding 1999 17,561,316 shares..................... 17,561 16,643 Additional paid-in capital............................................. 59,252,337 54,890,014 Accumulated deficit .................................................. (43,921,377) (34,820,887) ----------------- ---------------- Total stockholders' equity............................... 15,348,521 20,085,770 ----------------- ---------------- Total liabilities and stockholders' equity............... $19,844,378 $23,136,952 ----------------- ---------------- ----------------- ---------------- THE ACCOMPANYING NOTES ARE AN INTEGRAL PART OF THE UNAUDITED CONDENSED FINANCIAL STATEMENTS. 3 CUBIST PHARMACEUTICALS, INC. CONDENSED STATEMENTS OF OPERATIONS UNAUDITED THREE MONTHS ENDED SIX MONTHS ENDED JUNE 30, JUNE 30, ----------------------------------------- ------------------------------------- 1999 1998 1999 1998 ---- ---- ---- ---- ----------------- ------------------ ------------------ ----------------- Sponsored research revenues $862,500 $373,550 $1,466,875 $887,100 Operating expenses: Research and development 4,699,640 2,705,375 8,926,372 5,268,893 General and administrative 974,658 817,255 1,954,361 1,675,332 ----------------- ------------------ ------------------ ----------------- Total operating expenses 5,674,298 3,522,630 10,880,733 6,944,225 Interest income 239,609 195,948 474,195 380,116 Interest expense (89,897) (90,508) (160,827) (183,521) ----------------- ------------------ ------------------ ----------------- Net loss ($4,662,086) ($3,043,640) ($9,100,490) ($5,860,530) ----------------- ------------------ ------------------ ----------------- ----------------- ------------------ ------------------ ----------------- Basic and diluted net loss per common share ($0.27) ($0.29) ($0.52) ($0.55) ----------------- ------------------ ------------------ ----------------- ----------------- ------------------ ------------------ ----------------- Weighted average number of common shares for basic and diluted net loss per common share 17,548,337 10,580,920 17,362,780 10,580,986 ----------------- ------------------ ------------------ ----------------- ----------------- ------------------ ------------------ ----------------- THE ACCOMPANYING NOTES ARE AN INTEGRAL PART OF THE UNAUDITED CONDENSED FINANCIAL STATEMENTS. 4 CUBIST PHARMACEUTICALS, INC. CONDENSED STATEMENTS OF CASH FLOWS UNAUDITED SIX MONTHS ENDED JUNE 30, ---------------------------------------- 1999 1998 ---- ---- Cash flows used for operating activities: Net loss...................................................... $(9,100,490) $(5,860,530) Adjustments to reconcile net loss to net cash used in operating activities: Depreciation and amortization............................... 632,116 676,669 Common stock issued for technology milestone................ 250,000 -- Cashless exercise of warrants............................... 17,496 Changes in assets and liabilities: Accounts receivable.................................... (50,018) 53,333 Prepaid expenses and other current assets.............. (389,301) (44,762) Other assets.......................................... 16,437 38,301 Accounts payable and accrued expenses.................. 1,028,499 157,140 ----------------- ----------------- Total adjustments.................................... 1,505,229 880,681 ----------------- ----------------- Net cash used for operating activities........................... (7,595,261) (4,979,849) Cash flows from (for) investing activities: Purchase of equipment......................................... (250,658) (834,355) Leasehold improvements........................................ (31,448) (33,642) Purchase of short-term investments............................ (754,638) -- Maturities of short-term investments.......................... 6,105,904 2,007,487 Purchase of long-term investments............................. -- -- Maturities of long-term investments........................... -- 4,636,996 ----------------- ----------------- Net cash provided by investing activities........................ 5,069,160 5,776,486 ----------------- ----------------- Cash flows from financing activities: Issuance of stock............................................. 4,059,939 (5,249) Proceeds from notes receivable................................ 10,000 10,000 Repayments of debt............................................ (41,066) (103,823) Proceeds from equipment loan.................................. 787,500 690,080 Principal payments of capital lease obligations............... (330,258) (329,618) ----------------- ----------------- Net cash provided by financing activities........................ 4,486,115 261,390 ----------------- ----------------- Net increase in cash and cash equivalents........................ 1,960,014 1,058,027 Cash and cash equivalents, beginning of period................... 6,463,688 2,837,600 ----------------- ----------------- Cash and cash equivalents, end of period......................... $8,423,702 $3,895,627 ----------------- ----------------- ----------------- ----------------- Supplemental disclosures of cash flow information: Cash paid during the year for interest........................ $160,827 $183,521 THE ACCOMPANYING NOTES ARE AN INTEGRAL PART OF THE UNAUDITED CONDENSED FINANCIAL STATEMENTS. 5 CUBIST PHARMACEUTICALS, INC. NOTES TO THE UNAUDITED CONDENSED FINANCIAL STATEMENTS A. NATURE OF BUSINESS Cubist Pharmaceuticals, Inc. is a biopharmaceutical company founded in May 1992 and is engaged in the research, development and commercialization of novel classes of antiinfective drugs to combat serious life threatening bacteria and fungi infections. Cubist has established multiple technology licenses and collaborations and has established a network of advisors and collaborators. Cubist is located in Cambridge, Massachusetts. B. ACCOUNTING POLICIES BASIS OF PRESENTATION The accompanying unaudited condensed financial statements reflect all adjustments, consisting of normal recurring adjustments, which are necessary, in the opinion of management, for a fair presentation of the results of the interim periods presented. Interim results are not necessarily indicative of results for a full year. These unaudited condensed financial statements do not include all information and footnote disclosures required by generally accepted accounting principles and therefore should be read in conjunction with Cubist's audited financial statements and related footnotes for the year ended December 31, 1998 which are included in Cubist's Annual Report on Form 10-K. Such Annual Report on Form 10-K was filed with the Securities and Exchange Commission on March 17, 1999. NET LOSS PER COMMON SHARE The net loss per common share is computed based upon the weighted average number of common shares and common shares and common equivalent shares (using the treasury stock method) outstanding after certain adjustments described below. Common equivalent shares are not included in the per share calculations where the effect of their inclusion would be anti-dilutive. At June 30, 1999, and 1998 the Company had 1,697,209 and 1,130,331 options outstanding, respectively. At June 30, 1999, and 1998 the Company had 3,071,345; and 86,619 warrants outstanding, respectively. C. LICENSE AGREEMENT On February 3, 1999, Cubist entered into a research and license agreement with Novartis Pharma AG to use Cubist's proprietary VITA-TM- technology to validate and develop assays for antiinfective targets and to identify new compounds for development as antiinfective agents. In exchange for the license, Novartis will pay research payments and, if certain scientific and development milestones are achieved, Novartis will make milestone payments. In addition, Novartis will be required to pay royalties to Cubist on worldwide sales of any drug developed and commercialized from any products derived from this collaboration. Upon the signing of the research and license agreement, Novartis purchased, and Cubist issued to Novartis, 797,488 shares of Common Stock for a total purchase price of $4.0 million in cash. The proceeds from the sale of these shares will be primarily used to fund the clinical development of daptomycin and development of its VITA-TM- technology. 6 ITEM 2. MANAGEMENT'S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS EXCEPT FOR THE HISTORICAL INFORMATION CONTAINED HEREIN, THIS QUARTERLY REPORT ON FORM 10-Q MAY CONTAIN "FORWARD-LOOKING STATEMENTS" WITHIN THE MEANING OF SECTION 27A OF THE SECURITIES ACT OF 1933 AND SECTION 21E OF THE SECURITIES EXCHANGE ACT OF 1934, INCLUDING, BUT NOT LIMITED TO, (I) STATEMENTS ABOUT THE ADEQUACY OF CUBIST'S CASH, CASH EQUIVALENTS, OTHER CAPITAL RESOURCES, INTEREST INCOME, OTHER INCOME AND FUTURE REVENUES DUE UNDER CUBIST'S COLLABORATIVE AGREEMENTS TO FUND ITS OPERATING EXPENSES AND CAPITAL REQUIREMENTS AS CURRENTLY PLANNED THROUGH 1999, (II) STATEMENTS ABOUT THE AMOUNT OF CAPITAL EXPENDITURES THAT CUBIST EXPECTS TO INCUR IN 1999, AND (III) CERTAIN STATEMENTS IDENTIFIED OR QUALIFIED BY WORDS SUCH AS "LIKELY", "WILL", "SUGGESTS", "MAY", "WOULD", "COULD", "SHOULD", "EXPECTS", "ANTICIPATES", "ESTIMATES", "PLANS", "PROJECTS", "BELIEVES", OR SIMILAR EXPRESSIONS (AND VARIANTS OF SUCH WORDS OR EXPRESSIONS). YOU ARE CAUTIONED THAT FORWARD-LOOKING STATEMENTS ARE INHERENTLY UNCERTAIN. ACTUAL PERFORMANCE AND RESULTS OF OPERATIONS MAY DIFFER MATERIALLY FROM THOSE PROJECTED OR SUGGESTED IN THE FORWARD-LOOKING STATEMENTS DUE TO CERTAIN RISKS AND UNCERTAINTIES, INCLUDING, BUT NOT LIMITED TO, THE RISKS AND UNCERTAINTIES DESCRIBED OR DISCUSSED IN THE SECTION "RISK FACTORS" IN CUBIST'S ANNUAL REPORT ON FORM 10-K FOR THE FISCAL YEAR ENDED DECEMBER 31, 1998. THE FORWARD-LOOKING STATEMENTS CONTAINED HEREIN REPRESENT CUBIST'S JUDGMENT AS OF THE DATE OF THIS QUARTERLY REPORT ON FORM 10-Q, AND CUBIST CAUTIONS READERS NOT TO PLACE UNDUE RELIANCE ON SUCH STATEMENTS. OVERVIEW Since its incorporation on May 1, 1992 and commencement of operations in February 1993, Cubist has been engaged in the research, development and commercialization of novel antiinfective drugs to combat serious life threatening bacteria and fungi infections. Cubist has a limited history of operations and has experienced significant operating losses since inception. The Company expects to incur significant additional operating losses over the next several years and expects cumulative losses to increase substantially due to expanded research and development efforts, pre-clinical and clinical trials and development of manufacturing, marketing and sales capabilities. A key element of Cubist's strategy is to enhance certain of its drug discovery and development programs and to fund its capital requirements, in part, by entering into collaborative agreements with major pharmaceutical companies. Cubist is a party to collaborative agreements based specifically on its aminoacyl-tRNA synthetase program with Bristol-Myers Squibb and Merck. Under these collaborative agreements, Cubist is entitled to receive research support payments and, if certain drug development milestones are achieved, milestone payments. In addition, Cubist will be entitled to receive royalties on worldwide sales of any drug developed and commercialized from these collaborations. On February 3, 1999, Cubist entered into a research and license agreement with Novartis Pharma AG to use Cubist's proprietary VITA-TM- technology to validate and develop assays for antiinfective targets and to identify new compounds for development as antiinfective agents. In exchange for the license, Novartis will pay Cubist research payments and if certain scientific and development milestones are achieved, Novartis will make milestone payments. In addition, Novartis will be required to pay royalties to Cubist on worldwide sales of any drug developed and commercialized from any products derived from this collaboration. Upon the signing of the research and license agreement, Novartis purchased, and Cubist issued to Novartis, 797,488 shares of Common Stock for a total purchase price of $4.0 million in cash. The proceeds from the sale of these shares will be primarily used to fund the clinical development of daptomycin and development of its VITA-TM- technology. These additional funds together with existing cash resources are expected to be used to fund the Company's operations and capital requirements through 1999. On November 7, 1997, Cubist entered into a license agreement with Eli Lilly and Company, pursuant to which Cubist acquired exclusive worldwide rights to develop, manufacture and market daptomycin. In exchange for such license, Cubist has paid to Eli Lilly an upfront license fee in cash, and if certain drug development milestones are achieved, has agreed to pay milestone payments in cash or by issuing shares of Common Stock to Eli Lilly. In addition, Cubist will be required to pay royalties to Eli Lilly on worldwide sales of daptomycin. Daptomycin is a novel, natural product being developed for the treatment of STAPHYLOCOCCUS AUREUS and enterococcus infections in humans. Cubist began clinical trials of daptomycin in February of 1999. On February 19, 1999 Cubist issued to Eli Lilly and Co. 56,948 shares of Cubist Common Stock as consideration for the licensing of daptomycin to Cubist pursuant to, and in accordance with, the terms of the 7 agreements with Eli Lilly dated November 7, 1997. The issuance of shares was incident to the initiation of Phase III clinical testing of daptomycin. RESULTS OF OPERATIONS THREE MONTHS ENDED JUNE 30, 1999 AND 1998 REVENUES. Total revenues in the three months ended June 30, 1999 were $863,000 compared to $374,000 in the three months ended June 30, 1998, an increase of $489,000 or 130.7%. The revenue earned in the three months ended June 30, 1999 consisted of $563,000 in research support funding from the Novartis collaboration and $250,000 in research support funding from the Bristol-Myers Squibb collaboration; and $50,000 in funding from SBIR grants. In the three months ended June 30, 1998, total revenues consisted of research support funding from the Bristol-Myers Squibb collaboration; and funding from SBIR grants. The increase was due to revenues associated with the Novartis collaboration. RESEARCH AND DEVELOPMENT EXPENSES. Total research and development expenses in the three months ended June 30, 1999 were $4,700,000 compared to $2,705,000 in the three months ended June 30, 1998, an increase of $1,995,000 or 73.8%. The increase was largely due to increased consulting and manufacturing costs related to daptomycin development, and the additional personnel and purchases required by such development; and milestone expenses related to the initiation of Phase III clinical trials. GENERAL AND ADMINISTRATIVE EXPENSES. General and administrative expenses in the three months ended June 30, 1999 were $975,000 compared to $817,000 in the three months ended June 30, 1998, an increase of $158,000 or 19.3%. The increase was largely due to increased costs related to personnel and increased investor and public relations expenses. INTEREST INCOME AND EXPENSE. Interest income in the three months ended June 30, 1999 was $240,000 compared to $196,000 in the three months ended June 30, 1998, an increase of $44,000 or 22.5%. The increase in interest income was due primarily to a higher average cash, cash equivalent and investment balances during the three months ended June 30, 1999 as compared to the three months ended June 30, 1998 due to the Novartis collaboration. Interest expense in the three months ended June 30, 1999 was $90,000 as compared to $91,000 during the three months ended June 30, 1998. NET LOSS. The net loss during the three months ended June 30, 1999 was $4,662,000 compared to $3,044,000 during the three months ended June 30, 1998, an increase of $1,618,000 or 53.2%. The increase was primarily due to additional expenses incurred associated with the development of daptomycin. SIX MONTHS ENDED JUNE 30, 1999 AND 1998 REVENUES. Total revenues in the six months ended June 30, 1999 were $1,467,000 compared to $887,000 in the six months ended June 30, 1998, an increase of $580,000 or 65.4%. The revenue recognized in the six months ended June 30, 1999 consisted of $1,417,000 in research support payments from the Bristol-Myers Squibb and Novartis collaborations; and $50,000 in SBIR grants. In the six months ended June 30, 1998, revenues consisted of research support payments from the Bristol-Myers Squibb and Merck collaborations; and in SBIR grants. The increase was due to revenues associated with the Novartis research & license agreement. RESEARCH AND DEVELOPMENT EXPENSES. Total research and development expenses in the six months ended June 30, 1999 were $8,926,000 compared to $5,269,000 in the six months ended June 30, 1998, an increase of $3,657,000 or 69.4%. The increase was largely due to increased costs related to daptomycin development, and the additional personnel and purchases that are required by such development. GENERAL AND ADMINISTRATIVE EXPENSES. General and administrative expenses in the six months ended June 30, 1999 were $1,954,000 compared to $1,675,000 in the six months ended June 30, 1998, an increase of $279,000 or 8 16.6%. The increase was primarily due to increased costs related to investor and public relations, and increased legal expenses. INTEREST INCOME AND EXPENSE. Interest income in the six months ended June 30, 1999 was $474,000 compared to $380,000 in the six months ended June 30, 1998, an increase of $94,000 or 24.7%. The increase in interest income was due primarily to a higher average cash, cash equivalent and investment balances during the six months ended June 30, 1999 as compared to the six months ended June 30, 1998. Interest expense in the six months ended June 30, 1999 was $161,000 as compared to $184,000 during the six months ended June 30, 1998 due to decreased capital lease activity. NET LOSS. The net loss during the six months ended June 30, 1999 was $9,100,000 compared to $5,861,000, an increase of $3,239,000 or 55.2%. The increase was primarily due to the additional expenses incurred to support the advancement of the Company's internal research and development programs as well as increased revenue from such stage of research support funding. LIQUIDITY AND CAPITAL RESOURCES Since inception, Cubist has financed its operations through the sale of equity securities, equipment financing, sponsored research revenues, license revenues and interest earned on invested capital. The total cash, cash equivalent and investments balance at June 30, 1999 was $15,593,000 compared to $19,012,000 at December 31, 1998. Since inception through June 30, 1999, Cubist had invested an aggregate of $8,100,000 (of which $259,000 was invested during the three months then ended) in property and equipment, primarily in laboratory equipment under capital leases. The obligations under capital leases at June 30, 1999 were $1,587,000. Minimum annual principal payments due under capital leases total $843,000 in 1999. Principal payments are scheduled to decline each year thereafter until expiration in 2002. Cubist made principal payments under its capital lease obligations of $330,000 in the six months ended on June 30, 1999. Cubist expects its capital expenditures in 1999 to be approximately $800,000 consisting of laboratory and other equipment purchases. On February 3, 1999, Cubist entered into a research and license agreement with Novartis Pharma AG to use Cubist's proprietary VITA-TM- technology to validate and develop assays for antiinfective targets and to identify new compounds for development as antiinfective agents. In exchange for the license, Novartis will pay Cubist research payments and if certain scientific and development milestones are achieved, Novartis will make milestone payments. In addition, Novartis will be required to pay royalties to Cubist on worldwide sales of any drug developed and commercialized from any products derived from this collaboration. Upon the signing of the research and license agreement, Novartis purchased, and Cubist issued to Novartis, 797,488 shares of Common Stock for a total purchase price of $4.0 million in cash. The proceeds from the sale of these shares will be primarily used to fund the clinical development of daptomycin and development of its VITA-TM- technology. The additional funds from the sale of shares to Novartis, together with existing cash resources and its existing capital resources, interest income and future revenues due under the Novartis, Bristol-Myers Squibb and Merck collaborative agreements will be sufficient to fund its operating expenses and capital requirements as currently planned through 1999. The actual cash requirements of Cubist may vary materially from those now planned and will depend on numerous factors. There can be no assurance that it's existing cash, cash equivalents, other capital resources, interest income and future revenues due under the Novartis, Bristol-Myers Squibb and Merck collaborative agreements will be sufficient to fund Cubist's operating expenses and capital requirements during that period. Cubist will need to raise substantial additional capital to fund its operations from and after January 1, 2000 and intends to seek such additional funding through public or private financing or collaborative or other arrangements with corporate partners. RECENT PRONOUNCEMENTS In June 1998, the Financial Accounting Standards Board issued Statement of Financial Accounting Standards No. 133 "Accounting for Derivative Instruments and Hedging Activities" which is effective for fiscal years beginning after June 15, 1999. The statement establishes accounting and reporting standards requiring that every derivative 9 instrument be recorded in the balance sheet as either an asset or liability measured at its fair value. SFAS No. 133 also requires that changes in the derivative's fair value be recognized currently in earnings unless specific hedge accounting criteria are met. Adoption of this standard is not expected to have a material impact on the financial position or results of operations of Cubist. YEAR 2000 READINESS The "Year 2000" issue generally describes the various problems which may result from the improper processing of dates and date-sensitive calculations. Computers and other equipment containing computer-related components (such as programmable logic controllers and other embedded systems) using two digits to identify the year in a date may not be able to distinguish between dates in the 20th century versus the 21st century. Because computer and microprocessor use is so widespread, the issue has become a societal concern, the impact of which is not yet known. Cubist has completed the assessment of its critical computer systems and embedded systems and believes them to be Year 2000 compliant. Although Cubist believes its critical systems are Year 2000 compliant, there can be no assurances that other defects will not be discovered in the future. Cubist believes that any failure of it's non-critical systems to be Year 2000 compliant will not have a material adverse effect on it. In addition to Cubist's critical systems, Cubist relies on third party service providers and suppliers (i.e., payroll services company, telecommunications companies, banks and utility companies and contract manufacturers) in the conduct of its business, and it recognizes that there may be potential exposure to Year 2000-related business disruptions as a result. Cubist has contacted its significant service providers and contract manufacturers and has obtained assurances from some that they are addressing Year 2000 issues in a prudent fashion. Others have not replied in any fashion, but none have informed Cubist of material Year 2000 issues. Cubist is unable to control whether the firms and suppliers it does business with currently, and in the future, will have systems which are Year 2000 compliant. Cubist's operations could be adversely affected to the extent that firms and suppliers would be unable to provide services, materials or products. To the extent that Year 2000 compliance assurances are not given by its third party service providers and suppliers, Cubist intends to devise contingency plans to address any potential negative effects in the event of the unavailability of services, materials or products. If necessary, Cubist may increase inventory levels of materials and products prior to December 1999 as a contingency against possible disruption of supply. Nevertheless, a contingency plan devised by Cubist may not prevent a business interruption caused by one or more of its third party service providers or suppliers, and the failure of any such contingency plan to do so may have a material adverse effect on Cubist. Expenditures to date have not been material and have consisted solely of the time of certain company personnel. Cubist does not currently expect that future costs of completing the assessment will be material. 10 ITEM 3. QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISK Cubist owns financial instruments that are sensitive to market risks as part of its investment portfolio. The investment portfolio is used to preserve Cubist's capital until it is required to fund operations, including it's research and development activities. None of these market-risk sensitive instruments are held for trading purposes. Cubist does not own derivative financial instruments in its investment portfolio. The investment portfolio contains instruments that are subject to the risk of a decline in interest rates. Interest Rate Risk - Cubist's investment portfolio includes investment grade debt instruments. These bonds are subject to interest rate risk, and could decline in value if interest rates fluctuate. Due to the short duration and conservative nature of these instruments, Cubist does not believe that it has a material exposure to interest rate risk. PART II -- OTHER INFORMATION ITEM 2. CHANGES IN SECURITIES AND USE OF PROCEEDS Cubist's Registration Statement on Form S-1 (Reg. No. 333-6795) in connection with it's initial public offering of Common Stock was declared effective by the Securities and Exchange Commission on October 25, 1996. On October 25, 1996, Cubist also filed another Registration Statement on Form S-1 (Reg. No. 333-5880) with the SEC pursuant to Rule 462 (b) promulgated under the Securities Act of 1933, as amended. For ease of reference and clarity, the two registration statements referred to in this paragraph and referred to in the following paragraphs collectively as the "IPO Registration Statement" registered 2,875,000 shares of Cubist's Common Stock under the Securities Act. The aggregate initial public offering proceeds for all 2,875,000 shares of Common Stock registered by the IPO Registration Statement was $17,250,000. The net proceeds to Cubist from such issuance and distribution, after deducting the aggregate amount of related expenses (including underwriting discounts and commissions) paid by Cubist were $15,153,000. Through June 30, 1999 Cubist spent $9,928,000 of the $15,153,000 net proceeds received for the following uses and in the following amounts per use: $373,000 in construction of plant, building and facilities; $2,174,000 for repayment of indebtedness; $7,381,000 for working capital. All amounts spent by Cubist for such uses, other than payment of salaries to directors and officers of Cubist, consisted of direct payments to persons or entities, none of which was a director or officer of Cubist, holder of 10 percent or more of any class of equity securities of Cubist or other affiliate of Cubist. Cubist holds the remaining $5,225,000 of the net proceeds in cash, cash equivalents, and investments. ITEM 4. SUBMISSION OF MATTERS TO A VOTE OF SECURITY HOLDERS (a) The Annual Meeting of Cubist's Stockholders was held on June 1, 1999. (b) The Annual Meeting was held to consider and vote upon (i) electing three individuals to serve as Class III directors on the Cubist Board of Directors for a three year term and until their successors have been duly elected and qualified to replace them, and (ii) approving an amendment to Cubist's Restated Certificate of Incorporation to increase the number of shares of Common Stock authorized for issuance by Cubist from 25,000,000 to 50,000,000;. (c) The votes cast with respect to each Director are summarized as follows: DIRECTOR NAME FOR WITHHELD TOTAL VOTES ------------- --- -------- ----------- Scott M. Rocklage, Ph.D. 14,336,555 24,880 14,361,435 Paul R. Schimmel, Ph.D. 14,334,345 27,090 14,361,435 John K. Clarke 14,347,590 13,845 14,361,435 11 The Cubist Board of Directors as of the date of this Quarterly Report consists of Scott M. Rocklage, Ph.D., Paul R. Schimmel, Ph.D., John K. Clarke, Barry Bloom, Ph.D., Geroge Conrades, David W. Martin, Jr., M.D., Walter Maupay, Trudie Resch and John Zabriskie, Ph.D. The votes cast for approval of the amendment to the Restated Certificate of Incorporation are summarized as follows: FOR AGAINST ABSTAIN BROKER NON-VOTES ---------- ------- ------- ---------------- 14,201,678 147,807 11,950 -0- A copy of the Restated Certificate of Incorporation of Cubist as amended and in effect as of the date of this Quarterly Report is filed with this Quarterly Report as Exhibit 3. ITEM 6. EXHIBITS AND REPORTS ON FORM 8-K (a) Exhibits 3 -- Restated Certificate of Incorporation as amended and in effect as of the date of this Quarterly Report. 27 -- Financial Data Schedule (b) Reports on Form 8-K A report on Form 8-K was filed by Cubist on June 29, 1999, to file a press release announcing the appointment of Walter Maupay, Trudie Resch and John Zabriskie, Ph.D. to the Cubist Board of Directors. SIGNATURE PURSUANT TO THE REQUIREMENTS OF THE SECURITIES EXCHANGE ACT OF 1934, THE REGISTRANT HAS DULY CAUSED THIS REPORT TO BE SIGNED ON ITS BEHALF BY THE UNDERSIGNED, THEREUNTO DULY AUTHORIZED. CUBIST PHARMACEUTICALS, INC. August 12, 1999 By: /s/ THOMAS A. SHEA -------------------------------------- Thomas A. Shea, Chief Financial Officer (AUTHORIZED OFFICER AND PRINCIPAL FINANCE AND ACCOUNTING OFFICER) 12