Exhibit 32.1

                          CEO CERTIFICATION PURSUANT TO
                             18 U.S.C. SECTION 1350



In  connection  with the  Quarterly  Report of  Emclaire  Financial  Corp.  (the
Corporation) on Form 10-Q for the period ending September 30, 2007 as filed with
the Securities and Exchange  Commission on the date here (the Report),  I, David
L. Cox, Chief  Executive  Officer of the  Corporation,  certify,  pursuant to 18
U.S.C.  ss. 1350, as adopted  pursuant to ss. 906 of the  Sarbanes-Oxley  Act of
2002, that:

     (1)  The Report fully  complies with the  requirements  of section 13(a) or
          15(d) of the Securities Exchange Act of 1934; and

     (2)  The  information  contained  in the  Report  fairly  presents,  in all
          material respects,  the consolidated financial condition and result of
          operations of the Corporation.

/s/  David L. Cox
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David L. Cox
Chairman of the Board,
President and Chief Executive Officer


November 9, 2007