Exhibit No. | | | Description of Document |
3.1 | (3) | | Certificate of Incorporation of Optimer Pharmaceuticals, Inc., as amended and restated. |
3.2 | (7) | | Bylaws of Optimer Pharmaceuticals, Inc., as amended. |
4.1 | (4) | | Common Stock Certificate of Optimer Pharmaceuticals, Inc. |
4.2 | (1) | | Investors’ Rights Agreement by and among Optimer Pharmaceuticals, Inc. and certain stockholders of the registrant dated November 30, 2005, as amended and restated. |
4.3 | (6) | | Registration Rights Agreement, dated October 23, 2007, by and between Optimer Pharmaceuticals, Inc. and the purchasers listed on the signature pages thereto. |
4.4 | (11) | | Form of Warrant. |
10.1 | (1)* | | Master Service Agreement between Optimer Pharmaceuticals, Inc. and Advanced Biologics, LLC (subsequently INC Research, Inc.), dated November 16, 2005, as amended. |
10.2 | (12)* | | Collaboration Research and Development and License Agreement between Optimer Pharmaceuticals, Inc. and Cempra Pharmaceuticals, Inc., dated March 31, 2006, as amended. |
10.3 | (4)* | | Agreement between Optimer Pharmaceuticals, Inc. and Sloan-Kettering Institute for Cancer Research dated July 31, 2002, as amended. |
10.4 | (3)* | | License Agreement between Optimer Pharmaceuticals, Inc. and Nippon Shinyaku Co., Ltd., dated June 10, 2004. |
10.5 | (1)* | | License Agreement between Optimer Pharmaceuticals, Inc. and The Scripps Research Institute dated July 23, 1999. |
10.6 | (1)* | | License Agreement between Optimer Pharmaceuticals, Inc. and The Scripps Research Institute dated May 30, 2001. |
10.7 | (1)* | | License Agreement between Optimer Pharmaceuticals, Inc. and The Scripps Research Institute dated May 30, 2001. |
10.8 | (1)* | | License Agreement between Optimer Pharmaceuticals, Inc. and The Scripps Research Institute dated June 1, 2004. |
10.9 | (3) | | Building Lease between Optimer Pharmaceuticals, Inc. and Pacific Sorrento Technology Park dated May 1, 2001, as amended by the First Amendment to Building Lease between Optimer Pharmaceuticals, Inc. and Pacific Sorrento Technology Park dated July 12, 2001. |
10.10 | (1)+ | | Form of Employee Proprietary Information Agreement of Optimer Pharmaceuticals, Inc. |
10.11 | (12)+ | | Employment Agreement between Optimer Pharmaceuticals, Inc. and Michael N. Chang dated June 17, 2005, as amended on October 2, 2008. |
10.12 | (1)+ | | Offer letter between Optimer Pharmaceuticals, Inc. and Sherwood L. Gorbach dated October 6, 2005. |
10.13 | (12)+ | | Offer letter between Optimer Pharmaceuticals, Inc. and Kevin P. Poulos dated June 15, 2006, as amended on October 2, 2008. |
10.14 | (12)+ | | Offer letter between Optimer Pharmaceuticals, Inc. and John D. Prunty dated May 10, 2006, as amended on October 2, 2008. |
10.15 | (1)+ | | Offer letter between Optimer Pharmaceuticals, Inc. and Tessie M. Che dated August 30, 2001. |
10.16 | (1)+ | | Offer letter between Optimer Pharmaceuticals, Inc. and Youe-Kong Shue dated February 18, 2000. |
10.17 | (1)+ | | Form of Indemnification Agreement between Optimer Pharmaceuticals, Inc. and its directors and officers. |
10.18 | (1)+ | | 1998 Stock Plan of Optimer Pharmaceuticals, Inc. |
10.19 | (1)+ | | Stock Plan Stock Option Agreement of Optimer Pharmaceuticals, Inc. |
10.20 | (3)+ | | 2006 Equity Incentive Plan of Optimer Pharmaceuticals, Inc. |
10.21 | (7)+ | | Employee Stock Purchase Plan of Optimer Pharmaceuticals, Inc., as amended. |
10.22 | (3) | | Prospective Buy-Back Agreement between Optimer Pharmaceuticals, Inc. and Par Pharmaceutical, Inc. dated January 19, 2007. |
10.23 | (5)* | | Supply Agreement with Biocon Limited dated August 29, 2005, as amended. |
10.24 | (5)* | | Assignment letter between Par Pharmaceutical, Inc. and Biocon Limited dated January 16, 2007. |
10.25 | (8)+ | | Summary of Optimer Pharmaceuticals, Inc. 2009 Incentive Compensation Plan. |
10.26 | (9) | | Office Lease, dated August 18, 2008, by and between Optimer Pharmaceuticals, Inc. and Trizec Sorrento Towers, LLC. |
10.27 | (10)+ | | Optimer Pharmaceuticals, Inc. Severance Benefit Plan |
23.1 | (12) | | Consent of Independent Registered Public Accounting Firm. |
31.1 | | | Certification of principal executive officer required by Rule 13a-14(a) or Rule 15d-14(a). |