Engineering and Consulting segment was $51.7 million, a decrease of 7.3% from the nine months ended September 27, 2019. Contract revenue for the Engineering and Consulting segment decreased primarily due to decreased subcontractor revenues combined with a reduction of scope of work related to one of our customers implemented during the second quarter of 2020.
Net Revenue for nine months ended October 2, 2020 was $143.8 million, an increase of 3.9% from $138.4 million for nine months ended September 27, 2019. The increase was primarily due to an increase in contract revenue generated from government projects and incremental contract revenue from our acquisitions of E3, Inc. and Onsite Energy, partially offset by Covid-19 work suspensions in our direct install programs for small businesses in our Energy segment, which generally use a higher percentage of subcontractor services than other projects in our Energy segment. Net Revenue in the Energy segment was $100.1 million for nine months ended October 2, 2020, an increase of 4.6% over the same period last year. Net Revenue in the Engineering and Consulting segment was $43.7 million for nine months ended October 2, 2020, an increase of 2.3% over the same period last year.
Direct costs of contract revenue were $199.2 million for nine months ended October 2, 2020, a decrease of 10.2%, from $221.9 million for nine months ended September 27, 2019. The decrease was primarily as a result of decreased contract revenues from our direct install programs for small businesses in our Energy segment, partially offset by an increase in contract revenue generated from government projects in our Energy segment, combined with additional direct costs of contract revenue related to our acquisitions of E3, Inc. and Onsite Energy.
Total general and administrative expenses for nine months ended October 2, 2020 was $105.4 million, an increase of 19.9% from $87.9 million for nine months ended September 27, 2019, driven primarily by personnel and facilities expenses related to our acquisitions of E3., Inc. and Onsite Energy, combined with increases in corporate general and administrative expenses, partially offset by a decrease in expenses in the Engineering and Consulting segment and cost-savings measures implemented in response to Covid-19.
Total other income (expense), net was $3.3 million of expense for nine months ended October 2, 2020, compared with $3.6 million for nine months ended September 27, 2019. The decrease in expense was the result of higher interest expense as a result of borrowings under our credit facilities related to the acquisitions of E3, Inc. and Onsite Energy, offset by income from an indemnification agreement.
Income tax benefit was $3.3 million for the nine months ended October 2, 2020 compared to a tax benefit of $1.9 million for the nine months ended September 27, 2019. The increase is primarily attributable to our loss before income tax combined with an increase in various tax deductions and tax credits.
Net loss for nine months ended October 2, 2020 was $10.5 million, or $0.90 per diluted share, as compared to net income of $1.6 million, or $0.14 per diluted share, for nine months ended September 27, 2019. The decrease was primarily driven by decreases in contract revenue as a result of Covid-19 combined with increases in stock-based compensation and intangible asset amortization from acquisitions. Adjusted Net Income (see “Use of Non-GAAP Financial Measures” below) for nine months ended October 2, 2020 was $9.0 million, or $0.77 per diluted share, as compared to Adjusted Net Income of $15.2 million, or $1.30 per diluted share, for nine months ended September 27, 2019.
Adjusted EBITDA (see “Use of Non-GAAP Financial Measures” below) was $19.5 million for nine months ended October 2, 2020, compared to $23.9 million for the nine months ended September 27, 2019.
Liquidity and Capital Resources
As of October 2, 2020, we had $11.2 million of cash and cash equivalents. Cash flows provided by operating activities were $26.9 million for the nine months ended October 2, 2020, as compared to cash flows provided by operating activities of $8.3 million for the nine months ended September 27, 2019. The higher cash flows resulted primarily due to improvement in cash collections, reductions in working capital requirements as a result of the reduction of revenues from the suspension of our small business energy programs, and cash flow contributions from our acquisitions of E3, Inc. and Onsite Energy.