Noninterest expense was $10.4 million for the three months ended March 31, 2021 compared with $9.8 million for the comparable period a year earlier, primarily reflecting increases in compensation and employee benefits expenses and other operating expenses. Noninterest expense was $20.6 million for the six months ended March 31, 2021 compared with $19.6 million for the comparable period a year earlier primarily reflecting increases in compensation and employee benefits expenses and other operating expenses. In both periods of 2021, increased compensation and employee benefits included performance-based commissions paid to residential mortgage team members, reflecting strong mortgage origination activity.
Balance Sheet, Asset Quality and Capital Adequacy Review
Total assets increased $76.3 million to $1.97 billion at March 31, 2021, from $1.89 billion at September 30, 2020, primarily due to increases in cash and cash equivalents offset in part by declines in investment securities available for sale and loans receivable. The Company built the majority of its cash position in the fiscal second quarter of 2020 and has maintained that position through the second quarter of fiscal 2021 to remain prepared for ongoing economic uncertainties. At March 31, 2021, cash and cash equivalents were $310.9 million.
Total net loans were $1.39 billion at March 31, 2021 compared with $1.42 billion at September 30, 2020. Residential real estate loans were $588.8 million at March 31, 2021 compared to $610.4 million at September 30, 2020. The Company sold $41.3 million in residential mortgage loans to the Federal Home Loan Bank of Pittsburgh during the six months ended March 31, 2021, recording gains on the sale of these loans in noninterest income. Indirect auto loans declined by $15.2 million during the second quarter of fiscal 2021, reflecting expected runoff of the portfolio as the Company exits the indirect auto lending business.
Commercial real estate loans were $555.4 million at March 31, 2021 compared with $509.6 million at September 30, 2020, with growth reflecting new loans, primarily in the Philadelphia market. Commercial loans were $115.2 million, compared with $139.6 million at September 30, 2020, primarily reflecting the net decrease of $12.3 million in PPP loans during fiscal 2021. Construction loans, declined to $9.7 million at March 31, 2021 from $11.9 million at September 30, 2020.
Loans still in forbearance at March 31, 2021 included $38.4 million in commercial real estate, $738,000 in commercial and $2.2 million in mortgage. In total, these loans represent 2.9% of our total outstanding loans at March 31, 2021 compared to 4.5% at September 30, 2020 and 12.4% at June 30, 2020.
Total deposits were $1.74 billion at March 31, 2021 up 13% compared with $1.54 billion at September 30, 2020. Core deposits (demand accounts, savings and money market) were $1.32 billion, or 76% of total deposits, at March 31, 2021. Noninterest bearing demand accounts were $273.9 million, up 13% from September 30, 2020, interest bearing demand accounts rose 64% to $451.4 million from September 30, 2020 levels, and money market accounts were $408.9 million, up $7.1 million or 1.8% from September 30, 2020. Total borrowings decreased to zero at March 31, 2021 from $125.9 million at September 30, 2020 as the Company shifted its wholesale funding to lower costing brokered deposits.
Nonperforming assets were $25.1 million, or 1.27% of total assets, at March 31, 2021, compared with $20.6 million, or 1.09% of total assets, at September 30, 2020 and $11.0 million, or 0.56% of total assets at March 31, 2020. Nonperforming assets include two nonperforming commercial real estate loans totaling $9.3 million and one commercial loan relationship totaling $5.9 million. The commercial real estate loans are well collateralized and carry personal guarantees.
For the three months ended March 31, 2021, the Company’s return on average assets and return on average equity were 0.93% and 8.89%, compared with 0.75% and 7.06%, respectively, in the comparable period of fiscal 2020.
The Bank continued to demonstrate financial strength with a Tier 1 leverage ratio of 9.62% at March 31, 2021, exceeding regulatory standards for a well-capitalized institution.