Stockholders' Equity | 5 . Stockholders’ Equity Stockholders’ Equity The following tables present the changes in stockholders’ equity (in thousands, except share data): Additional Total Common Stock Paid-in Accumulated Stockholders’ Shares Amount Capital Deficit Equity Balance at December 31, 2018 29,871,327 $ 30 $ 161,072 $ (139,660) $ 21,442 Issuance of common stock under equity plans 27,371 — (20) — (20) Stock-based compensation expense — — 596 — 596 Net loss — — — (7,213) (7,213) Balance at March 31, 2019 29,898,698 $ 30 $ 161,648 $ (146,873) $ 14,805 Issuance of common stock under equity plans 38,759 — 24 — 24 Stock-based compensation expense — — 416 — 416 Net loss — — — (6,326) (6,326) Balance at June 30, 2019 29,937,457 $ 30 $ 162,088 $ (153,199) $ 8,919 Stock-based compensation expense — — 315 315 Net loss — — — (5,199) (5,199) Balance at September 30, 2019 29,937,457 $ 30 $ 162,403 $ (158,398) $ 4,035 Additional Total Common Stock Paid-in Accumulated Stockholders’ Shares Amount Capital Deficit Equity Balance at December 31, 2017 17,711,928 $ 18 $ 121,670 $ (104,701) $ 16,987 Issuance of common stock under equity plans 38,019 — (78) — (78) Stock-based compensation expense — — 706 — 706 Vested shares related to repurchase liability — — 3 — 3 Issuances of common stock and warrants, net of offering costs 10,691,588 10 33,225 — 33,235 Net loss — — — (8,364) (8,364) Balance at March 31, 2018 28,441,535 $ 28 $ 155,526 $ (113,065) $ 42,489 Issuance of common stock under equity plans 149,126 — 213 — 213 Stock-based compensation expense — — 664 — 664 Vested shares related to repurchase liability — — 3 — 3 Issuances of common stock and warrants, net of offering costs 1,238,937 2 3,341 — 3,343 Net loss — — — (9,754) (9,754) Balance at June 30, 2018 29,829,598 $ 30 $ 159,747 $ (122,819) $ 36,958 Issuance of common stock under equity plans 11,246 — 11 — 11 Stock-based compensation expense — — 674 — 674 Vested shares related to repurchase liability — — 1 — 1 Net loss — — — (9,085) (9,085) Balance at September 30, 2018 29,840,844 $ 30 $ 160,433 $ (131,904) $ 28,559 Sales of Common Stock In October 2019, the Company entered into a Common Stock Purchase Agreement (the 2019 Purchase Agreement) with Aspire Capital which provides that, upon the terms and subject to the conditions and limitations set forth in the 2019 Purchase Agreement, Aspire Capital is committed to purchase up to an aggregate of $15.0 million of shares of the Company’s common stock solely at the Company’s request from time to time during a 30 month period and at prices based on the market price at the time of each sale. In consideration for entering into the 2019 Purchase Agreement and concurrently with the execution of the 2019 Purchase Agreement, the Company issued 1,426,579 shares of its common stock to Aspire Capital. In March 2017, we entered into a common stock purchase agreement (the 2017 Purchase Agreement) with Aspire Capital which provided that, upon the terms and subject to the conditions and limitations of the 2017 Purchase Agreement, Aspire Capital was committed to purchase up to an aggregate of $21.0 million of shares of our common stock. Upon execution of the 2019 Purchase Agreement, the 2017 Purchase Agreement with Aspire Capital was terminated in its entirety and no further sales of our common stock will occur under the 2017 Purchase Agreement. In March and April 2018, the Company sold 11,930,525 shares of its common stock at a purchase price of $2.70 per share, warrants to purchase 1,765,542 shares of its common stock at a purchase price of $2.69 per share and an exercise price of $0.01 per share (the Pre-Funded Warrants) and warrants to purchase 13,696,067 shares of its common stock at a purchase price of $0.125 per share and an exercise price of $2.70 per share (the Common Warrants) for net proceeds of approximately $36.5 million in a private placement to new and certain existing accredited investors. In accordance with their terms, the Pre-Funded Warrants and the Common Warrants may not be exercised if the holder’s ownership of the Company’s common stock would exceed 9.99% or 19.99% of the Company’s total shares outstanding following such exercise, depending on the investor. Both the Pre-Funded Warrants and the Common Warrants were recorded as a component of stockholders’ equity within additional paid-in capital. In April 2018, in connection with this transaction, the Company paid Angel Pond Capital, an affiliate of a holder of more than 5% of the Company’s common stock and an affiliate of a member of the Company’s Board of the Directors at that time, a fee totaling approximately $1.9 million as consideration for acting as a nonexclusive placement agent for this financing. At-The-Market Issuance Sales Agreement In September 2018, the Company entered into the Sales Agreement, as amended in February 2019, with JonesTrading, pursuant to which it may sell from time to time, at its option, up to an aggregate of $8.0 million of the Company’s shares of its common stock through JonesTrading, as sales agent, subject to limitations on the amount of securities the Company may sell under its effective registration statement on Form S-3 within any 12 month period. The Company is required to pay JonesTrading 2.5% of gross proceeds for the common stock sold through the Sales Agreement. During the three and nine months ended September 30, 2019 and the year ended December 31, 2018, the Company sold no shares of common stock through the Sales Agreement with JonesTrading and $8.0 million of common stock remains available for sale under the Sales Agreement. In September 2018, the Company terminated its At-the-Market Equity Offering Sales Agreement (Stifel Sales Agreement) with Stifel, Nicolaus & Company, Incorporated (Stifel). The Company had sold an aggregate of approximately $3.5 million of common stock through Stifel pursuant to the Stifel Sales Agreement prior to termination. Equity Plan Activity During the three and nine months ended September 30, 2019, t he Company issued shares of common stock upon the exercise of outstanding stock options. he Company issued shares and 27,371 shares, respectively, of common stock upon the vesting of restricted stock units. The Company withheld 18,934 shares of common stock on the vesting date of certain restricted stock units to settle the employees’ minimum statutory tax obligations for income and other related employment taxes, the payment of which is reported as a financing activity in the unaudited condensed consolidated statement of cash flows for the nine months ended September 30, 2019. the Company issued 38,759 shares of common stock in connection with the employee stock purchase plan. During the year ended December 31, 2018, the Company issued 136,720 shares of common stock upon the exercise of outstanding stock options, 38,019 shares of common stock upon the vesting of restricted stock units, and 54,135 shares of common stock in connection with the employee stock purchase plan. Common Stock Warrants As of September 30, 2019 , the Company had the following outstanding warrants for the purchase of common stock: Expiration Number of shares Exercise price May 13, 2022 18,415 $ 10.86 November 14, 2023 through June 4, 2024 38,758 $ 7.74 January 25, 2024 46,692 $ 5.14 March 27, 2024 13,696,067 $ 2.70 March 27, 2025 1,765,542 $ 0.01 May 3, 2025 53,639 $ 2.61 15,619,113 During the three and nine months ended September 30, 2019 and the year ended December 31, 2018, no warrants were exercised. Stock-Based Compensation Expense The weighted-average assumptions used in the Black-Scholes option pricing model to determine the fair value of the employee stock option grants were as follows: Three Months Ended Nine Months Ended September 30, September 30, 2019 2018 2019 2018 Risk-free interest rate —% 2.9% 2.6% 2.8% Expected volatility —% 80% 81% 80% Expected term (in years) — 6.3 6.2 6.2 Expected dividend yield —% —% —% —% Stock compensation expense for the ESPP was immaterial for the three and nine months ended September 30, 2019 and 2018. The allocation of stock-based compensation expense was as follows (in thousands): Three Months Ended Nine Months Ended September 30, September 30, 2019 2018 2019 2018 Research and development $ 132 $ 378 $ 653 $ 1,117 General and administrative 183 296 674 927 $ 315 $ 674 $ 1,327 $ 2,044 |