Stock-Based Awards and Benefit Plan | Stock-Based Awards and Benefit Plan On November 4, 2012, our board of directors adopted the Kindred Biosciences, Inc. 2012 Equity Incentive Plan or the “2012 Plan". The 2012 Plan provides for our board of directors to grant incentive stock options or non-qualified stock options for the purchase of common stock, to issue or sell shares of restricted common stock and to grant stock appreciation rights (“SARs”) to our employees, directors, consultants and advisers of the Company. Pursuant to the terms of the 2012 Plan, no options or SARs shall be granted under the 2012 Plan after 10 years from the date of adoption of the 2012 Plan. We have reserved 4,000,000 shares of our common stock for issuance under the 2012 Plan. The 2012 Plan terminated in May 2016. There were 3,495,979 stock option shares which had been granted prior to the plan’s expiration remaining outstanding as of December 31, 2016. In May 2016, we adopted the 2016 Equity Incentive Plan or the “2016 Plan”, and reserved 3,000,000 shares of our common stock for issuance under the 2016 Plan. The 2016 Plan is the successor to our 2012 Plan and all awards made under the 2012 Plan shall remain subject to the terms of that plan. Options granted under the 2016 Plan may be either incentive stock options or nonstatutory stock options. The 2016 Plan also provides for the grant of stock appreciation rights, restricted stock awards, restricted stock unit awards, performance stock awards, performance cash awards and other stock awards. The exercise price of a stock option may not be less than 100% of the closing price of our common stock on the date of the grant. If, at any time we grant an option, and the optionee directly or by attribution owns stock possessing more than 10% of the total combined voting power of all classes of our stock, the option price shall be at least 110% of the fair value and shall not be exercisable more than five years after the date of grant. Options generally vest over a period of one or four years from the date of grant. Options granted under the 2016 Plan expire no later than 10 years from the date of grant. As of December 31, 2016, there were 72,350 option shares outstanding and 2,927,650 shares available for future grants under the 2016 Plan. 2014 Employee Stock Purchase Plan In December 2014, our board of directors adopted the Kindred Biosciences, Inc. 2014 Employee Stock Purchase Plan (the “Purchase Plan”). A total of 200,000 shares of our common stock are authorized for issuance under the Purchase Plan. The Purchase Plan permits eligible employees to purchase common stock at a discount through payroll deductions during defined six months consecutive offering periods beginning on December 1 with the exception of our first offering period which commenced on January 1, 2015 for a five months duration. The price at which the stock is purchased is equal to the lower of 85% of the fair market value of the common stock on the first day of the offering or 85% of the fair market value of our common stock on the purchase date. A participant may purchase a maximum of 2,000 shares of common stock during each offering period, not to exceed $25,000 worth of common stock on the offering date during each calendar year. We use the Black-Scholes option pricing model, in combination with discounted employee price, in determining the value of the Purchase Plan expense to be recognized during each offering period. The weighted-average grant date fair value per share using the Black-Scholes option pricing model was $1.42 during the year ended December 31, 2016 . As of December 31, 2016 , there were 94,181 shares of common stock issued under the Purchase Plan and 105,819 shares available for future issuance under the Purchase Plan. At December 31, 2016 , we had an outstanding liability of $17,000 , which is included in accrued compensation on the consolidated balance sheet, for employee contributions to the Purchase Plan for shares pending issuance at the end of the next offering period. Reserved Shares At December 31, 2016 , shares of common stock reserved for future issuance inclusive of outstanding option shares are as follows: 2016 Equity Incentive Plan 3,000,000 2014 Employee Stock Purchase Plan 105,819 3,105,819 Stock Option Plan Activity Summary A summary of activity under our stock option plans is as follows: Shares Available For Grant Shares Issuable Under Options Weighted Average Exercise Price Weighted Average Remaining ContractualTerm (In Years) Aggregate Intrinsic Value Balance, December 31, 2013 2,579,661 1,375,914 $ 1.33 Granted (1,127,113 ) 1,127,113 $ 16.23 Exercised (56,112 ) $ 2.17 Forfeited - restricted stock and options 118,750 (117,500 ) $ 19.57 Balance, December 31, 2014 1,571,298 2,329,415 $ 7.60 Granted (922,083 ) 922,083 $ 6.54 Exercised (58,126 ) $ 1.81 Expired 5,104 (5,104 ) $ 19.96 Forfeited - stock options 72,083 (72,083 ) $ 12.48 Balance, December 31, 2015 726,402 3,116,185 $ 7.26 8.2 $ 2,908,000 2012 Plan terminated (a) (307,107 ) 2016 Plan authorized (b) 3,000,000 Granted (847,683 ) 847,683 $ 3.48 Exercised (39,501 ) $ 0.57 Expired 43,818 (43,818 ) $ 14.52 Forfeited - stock options 312,220 (312,220 ) $ 7.06 Balance, December 31, 2016 2,927,650 3,568,329 $ 6.36 7.5 $ 4,353,000 Options vested and expected to vest, December 31, 2016 3,568,329 $ 6.36 7.5 $ 4,353,000 Options exercisable, December 31, 2016 2,298,322 $ 6.50 7.0 $ 3,684,000 (a) The 2012 Equity Incentive Plan terminated in May 2016. All shares available for grant under this Plan expired. (b) The 2016 Equity Incentive Plan was adopted and approved by stockholders in May 2016. The aggregate intrinsic value of options is calculated as the difference between the exercise price of options and the fair value of our common stock for those options that had exercise prices lower than the fair value of our common stock on December 31, 2016 and 2015. The aggregate intrinsic value of stock options exercised during the years ended December 31, 2016 , 2015 and 2014 was $117,000 , $266,000 and $774,000 , respectively. We received proceeds of $23,000 , $105,000 and $121,000 from the exercise of common stock options during the years ended December 31, 2016 , 2015 and 2014, respectively. The weighted-average grant date fair value of options granted during the years ended December 31, 2016 , 2015 and 2014 was $2.45 , $5.03 and $12.09 per share, respectively. Restricted Stock We did not grant any restricted common stock in 2016, 2015 and 2014. As of December 31, 2016 , there were no unvested shares of restricted common stock. Stock-Based Compensation We recognize stock-based compensation expense for only the portion of awards that are expected to vest. In developing a forfeiture rate estimate, we have considered our historical experience to estimate pre-vesting forfeitures for service-based awards. The impact of a forfeiture rate adjustment will be recognized in full in the period of adjustment, and if the actual forfeiture rate is materially different from our estimate, we may be required to record adjustments to stock-based compensation expense in future periods. The fair value of each stock option grant is estimated on the date of grant using the Black-Scholes option-pricing model. Due to insufficient company-specific historical and implied volatility information, we estimate the expected stock price volatility based on the historical volatility of publicly traded peer companies and expect to continue to do so until such time as we have adequate historical data regarding the volatility of our common stock price. The expected term of our common stock options has been determined utilizing the “simplified” method as we have insufficient historical experience for options grants overall, rendering existing historical experience irrelevant to expectations for current grants. The risk-free interest rate is determined by reference to the U.S. Treasury yield curve in effect at the time of grant of the award for time periods approximately equal to the expected term of the award. Expected dividend yield is based on the fact that we have never paid cash dividends and does not expect to pay any cash dividends in the foreseeable future. Total stock-based compensation expense, related to all of our share-based payment awards, is comprised of the following: (In thousands) Years Ended December 31, 2016 2015 2014 Research and development $ 1,463 $ 1,857 $ 1,453 General and administrative 2,164 2,300 2,969 $ 3,627 $ 4,157 $ 4,422 Total stock-based compensation expense included stock options and expense from the Purchase Plan for the years ended December 31, 2016 and 2015, and stock options and restricted stock for the year ended December 31, 2014. We had an aggregate of approximately $5,179,455 of unrecognized stock-based compensation expense for options outstanding and the Purchase Plan as of December 31, 2016 , which is expected to be recognized over a weighted average period of 1.9 years . Valuation assumptions The relevant data used to determine the fair value of stock options earned or granted and the Purchase Plan is as follows: Years Ended December 31, 2016 2015 2014 Stock options: Weighted average risk-free interest rate 1.61% 1.51% 1.70% Weighted average expected term (in years) 6.3 6.1 6.4 Weighted average expected volatility 83.4% 94.8% 91.3% Weighted average expected dividend yield — — — Employee stock purchase plan: Weighted average risk-free interest rate 0.50% 0.08% — Weighted average expected term (in years) 0.5 0.5 0 Weighted average expected volatility 84.4% 80.7% — Weighted average expected dividend yield — — — |